Wall clock time and date at job start Mon Mar 30 2020 01:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47393 * 2 1 4 4 C 1.52996 * 109.47131 * 120.00843 * 2 1 3 5 5 N 1.46497 * 109.47419 * 65.31818 * 4 2 1 6 6 C 1.46503 * 119.99877 * 264.41830 * 5 4 2 7 7 C 1.50698 * 109.47232 * 276.12330 * 6 5 4 8 8 H 1.08002 * 119.99998 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99845 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00070 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99774 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46969 * 90.00109 * 11 9 7 13 13 H 1.48505 * 109.47064 * 209.99934 * 11 9 7 14 14 H 1.48502 * 109.47270 * 329.99950 * 11 9 7 15 15 C 1.34771 * 120.00030 * 84.41914 * 5 4 2 16 16 O 1.21279 * 120.00073 * 5.25236 * 15 5 4 17 17 C 1.50701 * 119.99973 * 185.24620 * 15 5 4 18 18 F 1.39908 * 110.45330 * 51.42308 * 17 15 5 19 19 C 1.54509 * 110.51009 * 174.02082 * 17 15 5 20 20 C 1.54483 * 104.06218 * 118.78549 * 19 17 15 21 21 O 1.44427 * 104.80336 * 336.02279 * 20 19 17 22 22 C 1.44433 * 105.27428 * 40.51080 * 21 20 19 23 23 H 1.08997 * 109.47031 * 300.00064 * 1 2 3 24 24 H 1.09002 * 109.46927 * 59.99225 * 1 2 3 25 25 H 1.08995 * 109.47249 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46904 * 240.00419 * 2 1 3 27 27 H 1.08998 * 109.47533 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47717 * 300.00292 * 3 2 1 29 29 H 1.09002 * 109.46753 * 60.00326 * 3 2 1 30 30 H 1.09002 * 109.46670 * 305.31506 * 4 2 1 31 31 H 1.08998 * 109.47180 * 185.32046 * 4 2 1 32 32 H 1.09000 * 109.47406 * 36.12248 * 6 5 4 33 33 H 1.09002 * 109.47132 * 156.11967 * 6 5 4 34 34 H 0.96996 * 119.99638 * 180.02562 * 10 9 7 35 35 H 1.08994 * 110.51392 * 237.42969 * 19 17 15 36 36 H 1.09003 * 110.51381 * 0.14654 * 19 17 15 37 37 H 1.09007 * 110.37182 * 94.84911 * 20 19 17 38 38 H 1.08998 * 110.37557 * 217.19357 * 20 19 17 39 39 H 1.08998 * 110.37324 * 200.65965 * 22 21 20 40 40 H 1.08997 * 110.37408 * 78.31697 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6590 -2.1346 1.1867 6 6 0.4418 -2.5955 1.8591 7 6 0.7413 -2.8647 3.3113 8 1 1.7387 -2.7085 3.6949 9 6 -0.2578 -3.3114 4.1499 10 7 -1.4721 -3.5030 3.6824 11 14 0.1136 -3.6458 5.9498 12 1 -0.1166 -2.4101 6.7406 13 1 -0.7774 -4.7248 6.4470 14 1 1.5301 -4.0683 6.0928 15 6 2.4284 -3.0107 0.5107 16 8 3.4839 -2.6496 0.0350 17 6 1.9771 -4.4391 0.3460 18 9 0.6720 -4.4846 -0.1562 19 6 2.9421 -5.2079 -0.5840 20 6 3.5009 -6.3391 0.3074 21 8 3.3543 -5.8506 1.6586 22 6 2.0669 -5.1966 1.6892 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 1.6010 -0.2656 2.1366 31 1 3.1258 -0.6396 1.2980 32 1 -0.3282 -1.8277 1.7832 33 1 0.0894 -3.5115 1.3849 34 1 -2.1750 -3.8168 4.2725 35 1 2.4025 -5.6235 -1.4349 36 1 3.7471 -4.5556 -0.9226 37 1 2.9220 -7.2523 0.1692 38 1 4.5520 -6.5171 0.0803 39 1 2.0164 -4.4970 2.5235 40 1 1.2681 -5.9345 1.7628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261217066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:20 Heat of formation + Delta-G solvation = -152.381878 kcal Electronic energy + Delta-G solvation = -23214.924002 eV Core-core repulsion = 19750.384713 eV Total energy + Delta-G solvation = -3464.539289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.12289 -41.25919 -39.62353 -37.71160 -35.75702 -34.23357 -32.70464 -30.39329 -29.45788 -28.03376 -27.38149 -25.12025 -24.35136 -23.06202 -21.35006 -20.28149 -18.72939 -18.36634 -17.99855 -17.68841 -16.84507 -16.48934 -16.23867 -16.08215 -15.89450 -15.52004 -15.07303 -14.74417 -14.47163 -14.27366 -14.11258 -13.81163 -13.48383 -13.16645 -13.06510 -13.01291 -12.69832 -12.62479 -12.58115 -12.45875 -12.18876 -12.07110 -11.90288 -11.73946 -11.61253 -11.51893 -11.09936 -10.68140 -10.52076 -9.52906 -8.21523 -6.34957 1.34446 1.40319 1.44454 1.52855 2.02905 2.39849 2.83369 3.03886 3.09784 3.24677 3.36643 3.80623 3.91642 3.99826 4.05843 4.15657 4.22144 4.48889 4.58088 4.62997 4.69720 4.74163 4.76448 4.86636 4.88621 4.92222 4.99227 5.00119 5.03430 5.16920 5.27660 5.37431 5.43395 5.61945 5.65639 5.76478 6.02381 6.42962 6.74192 7.03650 7.34851 8.83800 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.010214 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.294804 B = 2740.637883 C = 4345.668237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.134 4.134 4 C 0.119 3.881 5 N -0.582 5.582 6 C 0.229 3.771 7 C -0.547 4.547 8 H 0.054 0.946 9 C 0.030 3.970 10 N -0.911 5.911 11 Si 0.948 3.052 12 H -0.274 1.274 13 H -0.280 1.280 14 H -0.271 1.271 15 C 0.502 3.498 16 O -0.567 6.567 17 C 0.072 3.928 18 F -0.188 7.188 19 C -0.165 4.165 20 C 0.043 3.957 21 O -0.384 6.384 22 C 0.028 3.972 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.030 0.970 33 H 0.047 0.953 34 H 0.269 0.731 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.955 0.502 -7.193 8.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.192 4.192 4 C -0.004 4.004 5 N -0.310 5.310 6 C 0.109 3.891 7 C -0.585 4.585 8 H 0.072 0.928 9 C -0.171 4.171 10 N -0.549 5.549 11 Si 0.774 3.226 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.196 1.196 15 C 0.287 3.713 16 O -0.448 6.448 17 C 0.051 3.949 18 F -0.168 7.168 19 C -0.203 4.203 20 C -0.033 4.033 21 O -0.303 6.303 22 C -0.049 4.049 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.397 0.633 -7.201 9.021 hybrid contribution -0.583 -0.174 0.918 1.101 sum 4.814 0.459 -6.283 7.929 Atomic orbital electron populations 1.21826 0.94779 1.01096 1.02084 1.21413 0.96431 0.97509 0.96989 1.21696 1.01040 0.93560 1.02867 1.21602 0.99951 0.79869 0.98933 1.48219 1.25530 1.08361 1.48867 1.19638 0.81389 0.96627 0.91460 1.21549 0.96097 1.45978 0.94907 0.92808 1.25547 0.94610 0.94750 1.02231 1.70011 1.02069 1.45534 1.37300 0.85699 0.78290 0.78146 0.80506 1.19935 1.20518 1.19593 1.20559 0.84375 0.87504 0.78826 1.90563 1.23669 1.79028 1.51578 1.22478 0.79745 0.95053 0.97645 1.92827 1.38348 1.97291 1.88366 1.23546 0.99496 0.98292 0.98961 1.23713 1.03975 0.95762 0.79871 1.89161 1.35569 1.74740 1.30826 1.24277 0.86979 0.96681 0.96958 0.92541 0.91282 0.94560 0.92903 0.92408 0.91054 0.91747 0.90100 0.91481 0.95196 0.93474 0.92207 0.86566 0.87980 0.89544 0.86073 0.86475 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 8.35 71.98 0.60 -3.82 16 2 C -0.10 -3.28 3.08 -10.80 -0.03 -3.31 16 3 C -0.13 -3.24 9.19 71.98 0.66 -2.58 16 4 C 0.12 4.43 4.84 86.38 0.42 4.85 16 5 N -0.58 -24.94 2.20 -826.17 -1.82 -26.75 16 6 C 0.23 10.93 3.85 85.63 0.33 11.26 16 7 C -0.55 -27.84 6.93 25.60 0.18 -27.66 16 8 H 0.05 2.80 7.71 -2.91 -0.02 2.78 16 9 C 0.03 1.56 5.46 84.66 0.46 2.02 16 10 N -0.91 -49.18 13.29 21.45 0.28 -48.89 16 11 Si 0.95 41.28 29.54 68.60 2.03 43.31 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 15 C 0.50 21.48 6.69 87.66 0.59 22.07 16 16 O -0.57 -25.25 14.94 -3.03 -0.05 -25.29 16 17 C 0.07 2.80 1.17 -10.52 -0.01 2.79 16 18 F -0.19 -7.60 14.55 44.97 0.65 -6.95 16 19 C -0.17 -4.97 6.51 31.61 0.21 -4.76 16 20 C 0.04 1.15 7.63 72.49 0.55 1.70 16 21 O -0.38 -14.18 11.65 -148.98 -1.74 -15.91 16 22 C 0.03 1.14 6.17 72.48 0.45 1.59 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.04 1.33 6.21 -2.39 -0.01 1.31 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 3.02 8.03 -2.39 -0.02 3.00 16 31 H 0.07 2.52 7.53 -2.39 -0.02 2.50 16 32 H 0.03 1.50 6.38 -2.39 -0.02 1.49 16 33 H 0.05 2.38 4.63 -2.39 -0.01 2.37 16 34 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 35 H 0.12 2.86 8.06 -2.39 -0.02 2.84 16 36 H 0.10 3.24 6.52 -2.39 -0.02 3.23 16 37 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.12 2.60 8.14 -2.39 -0.02 2.59 16 39 H 0.12 5.42 4.67 -2.39 -0.01 5.41 16 40 H 0.08 3.19 8.12 -2.39 -0.02 3.17 16 Total: -1.00 -59.24 318.66 4.79 -54.45 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 1.03 Total: 21.89 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 4.40 Total: 4.15 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.53 Total: -75.65 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -1.78 Total: -41.20 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 0.65 Total: -6.95 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -59.24 4.79 -54.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261217066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.930 kcal (2) G-P(sol) polarization free energy of solvation -59.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds