Wall clock time and date at job start Mon Mar 30 2020 01:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47126 * 2 1 4 4 C 1.52998 * 109.47027 * 119.99618 * 2 1 3 5 5 N 1.46504 * 109.47226 * 182.86020 * 4 2 1 6 6 C 1.46504 * 119.99783 * 287.62161 * 5 4 2 7 7 C 1.50695 * 109.47329 * 270.00013 * 6 5 4 8 8 H 1.07999 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00021 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00145 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99850 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46865 * 90.00405 * 11 9 7 13 13 H 1.48499 * 109.47074 * 209.99926 * 11 9 7 14 14 H 1.48494 * 109.47168 * 330.00085 * 11 9 7 15 15 C 1.34774 * 120.00425 * 107.62463 * 5 4 2 16 16 O 1.21280 * 120.00397 * 185.94863 * 15 5 4 17 17 C 1.50701 * 119.99890 * 5.94515 * 15 5 4 18 18 F 1.39907 * 110.45693 * 306.16711 * 17 15 5 19 19 C 1.54505 * 110.51472 * 183.55733 * 17 15 5 20 20 C 1.54479 * 104.18526 * 241.15078 * 19 17 15 21 21 O 1.44641 * 104.69689 * 336.18742 * 20 19 17 22 22 C 1.44420 * 105.36939 * 40.34551 * 21 20 19 23 23 H 1.09001 * 109.47722 * 300.00592 * 1 2 3 24 24 H 1.09000 * 109.47098 * 60.00476 * 1 2 3 25 25 H 1.09004 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47722 * 239.99408 * 2 1 3 27 27 H 1.09004 * 109.47426 * 64.19318 * 3 2 1 28 28 H 1.09006 * 109.47333 * 184.19625 * 3 2 1 29 29 H 1.09006 * 109.47147 * 304.19011 * 3 2 1 30 30 H 1.08996 * 109.47323 * 62.86271 * 4 2 1 31 31 H 1.09002 * 109.47471 * 302.85942 * 4 2 1 32 32 H 1.09001 * 109.47248 * 30.00046 * 6 5 4 33 33 H 1.09005 * 109.46860 * 150.00031 * 6 5 4 34 34 H 0.97002 * 120.00225 * 179.97438 * 10 9 7 35 35 H 1.09000 * 110.50586 * 359.86726 * 19 17 15 36 36 H 1.09000 * 110.50779 * 122.43248 * 19 17 15 37 37 H 1.08996 * 110.36882 * 94.92305 * 20 19 17 38 38 H 1.09000 * 110.36913 * 217.25753 * 20 19 17 39 39 H 1.08995 * 110.37425 * 200.73406 * 22 21 20 40 40 H 1.09007 * 110.37089 * 78.39749 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5033 -0.6618 1.2843 6 6 4.2917 -1.4705 0.3511 7 6 4.5828 -2.8126 0.9715 8 1 4.2167 -3.0406 1.9616 9 6 5.3164 -3.7495 0.2750 10 7 5.5700 -4.9210 0.8162 11 14 5.9489 -3.3553 -1.4379 12 1 7.2962 -2.7387 -1.3383 13 1 6.0347 -4.6060 -2.2338 14 1 5.0189 -2.4080 -2.1031 15 6 4.1243 0.1367 2.1749 16 8 5.3292 0.2691 2.1338 17 6 3.3216 0.8651 3.2218 18 9 2.2990 1.6094 2.6237 19 6 4.2362 1.7815 4.0649 20 6 4.0969 1.2355 5.5033 21 8 2.8189 0.5582 5.5165 22 6 2.7371 -0.1295 4.2492 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.7393 1.9342 0.9252 28 1 3.1274 1.4434 -0.0752 29 1 1.6166 1.9776 -0.8501 30 1 1.7191 -1.7625 1.2241 31 1 1.6353 -0.2378 2.1385 32 1 3.7298 -1.6112 -0.5722 33 1 5.2298 -0.9606 0.1315 34 1 6.0859 -5.5803 0.3261 35 1 5.2694 1.7059 3.7260 36 1 3.8931 2.8149 4.0137 37 1 4.9006 0.5325 5.7217 38 1 4.1023 2.0547 6.2222 39 1 1.6991 -0.3582 4.0078 40 1 3.3318 -1.0427 4.2739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261217067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:24 Heat of formation + Delta-G solvation = -123.244519 kcal Electronic energy + Delta-G solvation = -23195.769840 eV Core-core repulsion = 19732.494042 eV Total energy + Delta-G solvation = -3463.275798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.05289 -39.78830 -38.41834 -36.53636 -33.77419 -32.43208 -31.68384 -29.63213 -28.01673 -26.94197 -25.88814 -23.69095 -23.09429 -21.40795 -19.94319 -19.07197 -17.49729 -17.06664 -16.78207 -15.93601 -15.67519 -15.24537 -14.95466 -14.75293 -14.31732 -14.21991 -13.91172 -13.76164 -13.19730 -12.74784 -12.59815 -12.40944 -12.23528 -12.00956 -11.78775 -11.62614 -11.50505 -11.27537 -11.14888 -10.99428 -10.87651 -10.69780 -10.56936 -10.20746 -10.16223 -9.85936 -9.62738 -9.18978 -8.66116 -7.86690 -6.16381 -4.16216 2.89319 3.23774 3.29171 3.32036 3.39531 3.84024 4.11126 4.32835 4.34128 4.60510 4.69342 5.03303 5.07681 5.09841 5.15646 5.17300 5.38144 5.50562 5.59042 5.65385 5.67872 5.79229 5.85399 5.90918 5.92211 6.03248 6.09619 6.22221 6.27662 6.49919 6.56700 6.57806 6.69041 6.84566 7.15733 7.51236 8.00736 8.34837 8.61853 8.85216 9.43172 10.96553 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.007501 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.927243 B = 3732.168283 C = 4625.703341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.160 4.160 4 C 0.102 3.898 5 N -0.574 5.574 6 C 0.215 3.785 7 C -0.533 4.533 8 H 0.075 0.925 9 C 0.075 3.925 10 N -0.894 5.894 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.504 3.496 16 O -0.524 6.524 17 C 0.069 3.931 18 F -0.179 7.179 19 C -0.171 4.171 20 C 0.046 3.954 21 O -0.368 6.368 22 C 0.034 3.966 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 12.417 3.344 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.217 4.217 4 C -0.021 4.021 5 N -0.303 5.303 6 C 0.095 3.905 7 C -0.571 4.571 8 H 0.093 0.907 9 C -0.128 4.128 10 N -0.532 5.532 11 Si 0.701 3.299 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.190 1.190 15 C 0.287 3.713 16 O -0.401 6.401 17 C 0.047 3.953 18 F -0.159 7.159 19 C -0.209 4.209 20 C -0.031 4.031 21 O -0.286 6.286 22 C -0.043 4.043 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.130 0.870 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.010 12.295 3.415 15.066 hybrid contribution 0.429 -0.004 -1.222 1.295 sum -7.581 12.291 2.194 14.607 Atomic orbital electron populations 1.21744 0.94836 1.01723 1.01623 1.21421 0.95575 0.96949 0.99062 1.22165 1.01140 0.95910 1.02529 1.21881 0.80208 1.01577 0.98483 1.47842 1.06542 1.41345 1.34564 1.19731 0.91512 0.90849 0.88432 1.21268 1.34964 0.96560 1.04325 0.90674 1.24828 0.95249 0.94762 0.97950 1.69886 1.39461 1.05847 1.38036 0.86872 0.80222 0.78113 0.84664 1.19862 1.20949 1.19015 1.20061 0.88170 0.80579 0.82489 1.90670 1.13914 1.63877 1.71607 1.22606 0.86558 0.92433 0.93695 1.92764 1.60675 1.78174 1.84329 1.23516 1.02976 0.99643 0.94732 1.23513 0.86455 0.96868 0.96224 1.89170 1.36957 1.67068 1.35426 1.24076 1.03391 0.94766 0.82076 0.92642 0.92764 0.92530 0.90874 0.90430 0.93080 0.93584 0.90149 0.90202 0.94808 0.94378 0.92445 0.86658 0.88964 0.91198 0.88300 0.87043 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.19 37.15 0.34 -1.27 16 2 C -0.11 -1.59 2.99 -90.63 -0.27 -1.86 16 3 C -0.16 -2.29 8.12 37.16 0.30 -1.99 16 4 C 0.10 1.65 4.64 -4.04 -0.02 1.63 16 5 N -0.57 -11.50 1.84 -175.06 -0.32 -11.82 16 6 C 0.21 5.11 4.20 -5.19 -0.02 5.09 16 7 C -0.53 -14.79 9.94 -34.44 -0.34 -15.13 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 10 N -0.89 -26.93 13.96 55.43 0.77 -26.15 16 11 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 15 C 0.50 9.99 6.09 -10.99 -0.07 9.92 16 16 O -0.52 -12.14 14.84 5.56 0.08 -12.06 16 17 C 0.07 1.08 1.17 -90.20 -0.11 0.98 16 18 F -0.18 -2.64 11.15 2.25 0.03 -2.61 16 19 C -0.17 -2.33 6.51 -25.17 -0.16 -2.49 16 20 C 0.05 0.57 7.65 37.93 0.29 0.86 16 21 O -0.37 -5.32 11.65 -35.23 -0.41 -5.73 16 22 C 0.03 0.51 6.23 37.94 0.24 0.74 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.14 7.34 -51.93 -0.38 0.76 16 27 H 0.08 1.08 5.03 -51.93 -0.26 0.82 16 28 H 0.05 0.84 7.38 -51.93 -0.38 0.46 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.08 1.14 3.62 -51.93 -0.19 0.95 16 32 H 0.03 0.78 6.25 -51.93 -0.32 0.45 16 33 H 0.04 0.97 6.78 -51.93 -0.35 0.62 16 34 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.12 1.72 6.51 -51.93 -0.34 1.39 16 36 H 0.09 1.08 8.06 -51.93 -0.42 0.67 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.11 1.43 6.90 -51.93 -0.36 1.08 16 40 H 0.09 1.42 7.87 -51.93 -0.41 1.01 16 LS Contribution 312.94 15.07 4.72 4.72 Total: -1.00 -31.57 312.94 -5.68 -37.25 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.96 Total: 1.39 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 0.08 Total: -1.49 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.45 Total: -37.98 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.33 Total: -17.79 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.03 Total: -2.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.57 -5.68 -37.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261217067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.994 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds