Wall clock time and date at job start Mon Mar 30 2020 01:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47126 * 2 1 4 4 C 1.52998 * 109.47027 * 119.99618 * 2 1 3 5 5 N 1.46504 * 109.47226 * 182.86020 * 4 2 1 6 6 C 1.46504 * 119.99783 * 287.62161 * 5 4 2 7 7 C 1.50695 * 109.47329 * 270.00013 * 6 5 4 8 8 H 1.07999 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00021 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00145 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99850 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46865 * 90.00405 * 11 9 7 13 13 H 1.48499 * 109.47074 * 209.99926 * 11 9 7 14 14 H 1.48494 * 109.47168 * 330.00085 * 11 9 7 15 15 C 1.34774 * 120.00425 * 107.62463 * 5 4 2 16 16 O 1.21280 * 120.00397 * 185.94863 * 15 5 4 17 17 C 1.50701 * 119.99890 * 5.94515 * 15 5 4 18 18 F 1.39907 * 110.45693 * 306.16711 * 17 15 5 19 19 C 1.54505 * 110.51472 * 183.55733 * 17 15 5 20 20 C 1.54479 * 104.18526 * 241.15078 * 19 17 15 21 21 O 1.44641 * 104.69689 * 336.18742 * 20 19 17 22 22 C 1.44420 * 105.36939 * 40.34551 * 21 20 19 23 23 H 1.09001 * 109.47722 * 300.00592 * 1 2 3 24 24 H 1.09000 * 109.47098 * 60.00476 * 1 2 3 25 25 H 1.09004 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47722 * 239.99408 * 2 1 3 27 27 H 1.09004 * 109.47426 * 64.19318 * 3 2 1 28 28 H 1.09006 * 109.47333 * 184.19625 * 3 2 1 29 29 H 1.09006 * 109.47147 * 304.19011 * 3 2 1 30 30 H 1.08996 * 109.47323 * 62.86271 * 4 2 1 31 31 H 1.09002 * 109.47471 * 302.85942 * 4 2 1 32 32 H 1.09001 * 109.47248 * 30.00046 * 6 5 4 33 33 H 1.09005 * 109.46860 * 150.00031 * 6 5 4 34 34 H 0.97002 * 120.00225 * 179.97438 * 10 9 7 35 35 H 1.09000 * 110.50586 * 359.86726 * 19 17 15 36 36 H 1.09000 * 110.50779 * 122.43248 * 19 17 15 37 37 H 1.08996 * 110.36882 * 94.92305 * 20 19 17 38 38 H 1.09000 * 110.36913 * 217.25753 * 20 19 17 39 39 H 1.08995 * 110.37425 * 200.73406 * 22 21 20 40 40 H 1.09007 * 110.37089 * 78.39749 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5033 -0.6618 1.2843 6 6 4.2917 -1.4705 0.3511 7 6 4.5828 -2.8126 0.9715 8 1 4.2167 -3.0406 1.9616 9 6 5.3164 -3.7495 0.2750 10 7 5.5700 -4.9210 0.8162 11 14 5.9489 -3.3553 -1.4379 12 1 7.2962 -2.7387 -1.3383 13 1 6.0347 -4.6060 -2.2338 14 1 5.0189 -2.4080 -2.1031 15 6 4.1243 0.1367 2.1749 16 8 5.3292 0.2691 2.1338 17 6 3.3216 0.8651 3.2218 18 9 2.2990 1.6094 2.6237 19 6 4.2362 1.7815 4.0649 20 6 4.0969 1.2355 5.5033 21 8 2.8189 0.5582 5.5165 22 6 2.7371 -0.1295 4.2492 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.7393 1.9342 0.9252 28 1 3.1274 1.4434 -0.0752 29 1 1.6166 1.9776 -0.8501 30 1 1.7191 -1.7625 1.2241 31 1 1.6353 -0.2378 2.1385 32 1 3.7298 -1.6112 -0.5722 33 1 5.2298 -0.9606 0.1315 34 1 6.0859 -5.5803 0.3261 35 1 5.2694 1.7059 3.7260 36 1 3.8931 2.8149 4.0137 37 1 4.9006 0.5325 5.7217 38 1 4.1023 2.0547 6.2222 39 1 1.6991 -0.3582 4.0078 40 1 3.3318 -1.0427 4.2739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261217067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:23 Heat of formation + Delta-G solvation = -143.804175 kcal Electronic energy + Delta-G solvation = -23196.661374 eV Core-core repulsion = 19732.494042 eV Total energy + Delta-G solvation = -3464.167332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.29865 -41.24069 -39.68957 -37.96519 -35.45273 -34.31415 -32.94420 -31.05441 -29.66937 -28.03277 -27.19814 -25.36205 -24.36901 -22.85762 -21.17114 -20.53053 -19.14914 -18.89221 -18.07794 -17.33694 -17.01367 -16.60392 -16.48210 -16.13714 -15.81305 -15.49180 -15.31917 -15.00140 -14.63000 -14.54196 -13.96363 -13.79450 -13.62011 -13.39813 -13.19343 -12.93619 -12.84055 -12.62097 -12.50203 -12.36086 -12.34718 -12.03488 -11.93822 -11.82605 -11.74042 -11.40250 -10.99916 -10.85936 -10.76013 -9.55341 -8.37270 -6.42714 1.30265 1.33315 1.33792 1.41683 1.88581 2.27380 2.67257 2.82421 2.97109 3.13190 3.34309 3.49363 3.83209 3.95755 4.01117 4.06641 4.23983 4.35184 4.44385 4.50976 4.62731 4.69250 4.72699 4.78196 4.80837 4.85021 4.89994 4.92643 5.04195 5.11160 5.24938 5.36204 5.41488 5.46163 5.49488 5.57189 6.16348 6.42940 6.58330 6.98654 7.22409 8.78950 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.007501 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.927243 B = 3732.168283 C = 4625.703341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 C -0.155 4.155 4 C 0.097 3.903 5 N -0.579 5.579 6 C 0.226 3.774 7 C -0.537 4.537 8 H 0.036 0.964 9 C 0.018 3.982 10 N -0.939 5.939 11 Si 0.940 3.060 12 H -0.275 1.275 13 H -0.274 1.274 14 H -0.242 1.242 15 C 0.495 3.505 16 O -0.566 6.566 17 C 0.077 3.923 18 F -0.169 7.169 19 C -0.169 4.169 20 C 0.045 3.955 21 O -0.371 6.371 22 C 0.038 3.962 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.022 0.978 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.021 0.979 34 H 0.269 0.731 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.064 0.936 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.221 14.327 2.801 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 C -0.212 4.212 4 C -0.025 4.025 5 N -0.307 5.307 6 C 0.104 3.896 7 C -0.576 4.576 8 H 0.054 0.946 9 C -0.181 4.181 10 N -0.579 5.579 11 Si 0.763 3.237 12 H -0.201 1.201 13 H -0.199 1.199 14 H -0.165 1.165 15 C 0.280 3.720 16 O -0.446 6.446 17 C 0.055 3.945 18 F -0.150 7.150 19 C -0.207 4.207 20 C -0.031 4.031 21 O -0.290 6.290 22 C -0.040 4.040 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.083 0.917 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.716 14.223 2.882 17.464 hybrid contribution 0.938 -0.607 -0.964 1.476 sum -8.777 13.616 1.918 16.313 Atomic orbital electron populations 1.21704 0.92060 1.02516 1.03003 1.21422 0.97801 0.96480 0.97148 1.22115 0.99303 0.96058 1.03690 1.22151 0.77820 1.01843 1.00659 1.47899 1.08052 1.40736 1.34054 1.19360 0.91695 0.89068 0.89479 1.21471 1.34637 0.98536 1.02913 0.94582 1.25741 0.95435 0.94452 1.02500 1.70025 1.40665 1.07112 1.40104 0.85822 0.79662 0.78682 0.79503 1.20068 1.19875 1.16534 1.20828 0.88151 0.80299 0.82675 1.90639 1.15901 1.65342 1.72693 1.22444 0.86755 0.92930 0.92324 1.92780 1.60134 1.77819 1.84248 1.23561 1.01572 1.00629 0.94907 1.23711 0.85513 0.97685 0.96211 1.89172 1.37879 1.67073 1.34853 1.24011 1.04070 0.93700 0.82200 0.91384 0.91276 0.92100 0.92315 0.89873 0.95887 0.91661 0.90918 0.88143 0.93366 0.96089 0.92166 0.88325 0.86451 0.91724 0.84655 0.85001 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.19 71.98 0.66 -2.00 16 2 C -0.11 -2.93 2.99 -10.80 -0.03 -2.96 16 3 C -0.15 -4.10 8.12 71.98 0.58 -3.52 16 4 C 0.10 3.06 4.64 86.38 0.40 3.46 16 5 N -0.58 -23.45 1.84 -826.15 -1.52 -24.97 16 6 C 0.23 10.89 4.20 85.63 0.36 11.25 16 7 C -0.54 -30.81 9.94 25.60 0.25 -30.55 16 8 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 9 C 0.02 1.02 5.47 84.65 0.46 1.48 16 10 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 11 Si 0.94 43.88 27.47 68.60 1.88 45.77 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 14 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 15 C 0.49 19.91 6.09 87.66 0.53 20.44 16 16 O -0.57 -27.09 14.84 -3.03 -0.04 -27.13 16 17 C 0.08 2.35 1.17 -10.52 -0.01 2.33 16 18 F -0.17 -4.58 11.15 44.97 0.50 -4.08 16 19 C -0.17 -4.35 6.51 31.61 0.21 -4.14 16 20 C 0.04 1.02 7.65 72.48 0.55 1.57 16 21 O -0.37 -10.00 11.65 -148.98 -1.74 -11.73 16 22 C 0.04 1.08 6.23 72.49 0.45 1.53 16 23 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.06 1.75 7.34 -2.39 -0.02 1.73 16 27 H 0.08 2.10 5.03 -2.39 -0.01 2.08 16 28 H 0.02 0.72 7.38 -2.38 -0.02 0.70 16 29 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.10 2.70 3.62 -2.39 -0.01 2.69 16 32 H 0.05 2.18 6.25 -2.39 -0.01 2.17 16 33 H 0.02 1.09 6.78 -2.38 -0.02 1.07 16 34 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.10 2.94 6.51 -2.39 -0.02 2.92 16 36 H 0.12 2.42 8.06 -2.39 -0.02 2.40 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.13 3.14 6.90 -2.39 -0.02 3.12 16 40 H 0.07 2.20 7.87 -2.38 -0.02 2.18 16 Total: -1.00 -70.31 312.94 4.79 -65.52 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.98 Total: 15.62 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 4.43 Total: -1.12 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -1.22 Total: -82.84 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.78 Total: -38.87 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.50 Total: -4.08 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.77 kcal Total: -70.31 4.79 -65.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261217067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.281 kcal (2) G-P(sol) polarization free energy of solvation -70.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds