Wall clock time and date at job start Mon Mar 30 2020 01:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46791 * 95.01117 * 3 2 1 5 5 C 1.36944 * 119.99643 * 272.22616 * 4 3 2 6 6 H 1.08001 * 120.00215 * 187.40569 * 5 4 3 7 7 C 1.38818 * 119.99864 * 7.40183 * 5 4 3 8 8 N 1.31615 * 119.99769 * 27.41352 * 7 5 4 9 9 Si 1.86801 * 119.99766 * 207.40785 * 7 5 4 10 10 H 1.48504 * 109.46644 * 94.99705 * 9 7 5 11 11 H 1.48498 * 109.46927 * 214.99548 * 9 7 5 12 12 H 1.48494 * 109.47393 * 334.99878 * 9 7 5 13 13 C 1.46495 * 120.00431 * 92.23043 * 4 3 2 14 14 C 1.53000 * 109.47129 * 269.99797 * 13 4 3 15 15 C 1.53003 * 109.46740 * 306.82125 * 14 13 4 16 16 C 1.52994 * 109.47381 * 186.82180 * 14 13 4 17 17 O 1.42893 * 109.47277 * 66.81643 * 14 13 4 18 18 C 1.35912 * 116.99628 * 62.15945 * 17 14 13 19 19 C 1.38728 * 120.05179 * 177.95677 * 18 17 14 20 20 C 1.38147 * 119.93979 * 179.97438 * 19 18 17 21 21 C 1.38269 * 120.05736 * 359.97438 * 20 19 18 22 22 C 1.38257 * 120.10986 * 0.04899 * 21 20 19 23 23 C 1.38150 * 120.05786 * 359.94864 * 22 21 20 24 24 H 4.40642 * 5.51377 * 180.02562 * 4 1 2 25 25 H 1.08993 * 109.46860 * 335.00750 * 3 2 1 26 26 H 1.09003 * 109.46867 * 215.00421 * 3 2 1 27 27 H 0.97003 * 119.99745 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47236 * 149.99839 * 13 4 3 29 29 H 1.09003 * 109.47055 * 29.99967 * 13 4 3 30 30 H 1.09005 * 109.46973 * 186.48262 * 15 14 13 31 31 H 1.09000 * 109.47581 * 306.47978 * 15 14 13 32 32 H 1.08997 * 109.47542 * 66.48747 * 15 14 13 33 33 H 1.09005 * 109.47059 * 281.89712 * 16 14 13 34 34 H 1.09008 * 109.47429 * 41.89336 * 16 14 13 35 35 H 1.09003 * 109.47518 * 161.89103 * 16 14 13 36 36 H 1.08000 * 120.03533 * 359.70250 * 19 18 17 37 37 H 1.08003 * 119.96914 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.94310 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.97267 * 179.97438 * 22 21 20 40 40 H 1.08005 * 120.02827 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.1215 -1.3760 5 6 3.3195 -1.0012 -2.1378 6 1 3.7906 -0.9248 -3.1066 7 6 2.9018 -2.2377 -1.6647 8 7 1.9004 -2.3127 -0.8139 9 14 3.7609 -3.7950 -2.2359 10 1 4.8100 -4.1700 -1.2539 11 1 2.7697 -4.8952 -2.3458 12 1 4.3862 -3.5576 -3.5617 13 6 3.4243 1.4434 -1.9369 14 6 2.1663 2.0008 -2.6058 15 6 1.6265 0.9789 -3.6084 16 6 2.5105 3.2999 -3.3370 17 8 1.1741 2.2624 -1.6114 18 6 1.4790 3.1881 -0.6642 19 6 0.5458 3.5222 0.3065 20 6 0.8584 4.4631 1.2685 21 6 2.1001 5.0713 1.2647 22 6 3.0316 4.7404 0.2981 23 6 2.7240 3.8001 -0.6661 24 1 -1.0501 0.0002 0.0001 25 1 3.0097 -0.9306 0.4342 26 1 3.0090 0.8426 0.5895 27 1 1.6083 -3.1767 -0.4836 28 1 4.2211 1.3577 -2.6757 29 1 3.7397 2.1155 -1.1388 30 1 0.8004 1.4192 -4.1669 31 1 2.4200 0.6928 -4.2987 32 1 1.2742 0.0966 -3.0740 33 1 2.5835 4.1142 -2.6161 34 1 3.4638 3.1849 -3.8531 35 1 1.7294 3.5262 -4.0630 36 1 -0.4257 3.0504 0.3075 37 1 0.1324 4.7233 2.0246 38 1 2.3424 5.8070 2.0174 39 1 4.0007 5.2171 0.2970 40 1 3.4521 3.5416 -1.4208 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262376225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:17 Heat of formation + Delta-G solvation = 101.974647 kcal Electronic energy + Delta-G solvation = -22319.973569 eV Core-core repulsion = 19297.233231 eV Total energy + Delta-G solvation = -3022.740338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.32690 -37.48814 -35.66459 -33.21690 -31.30812 -30.67069 -30.48543 -29.44430 -26.76067 -26.15678 -25.67003 -22.62816 -21.98789 -21.48121 -19.66177 -17.45512 -16.94390 -16.21571 -16.07570 -15.24046 -14.91238 -14.79253 -14.09079 -13.72652 -13.61576 -13.50827 -12.94095 -12.76113 -12.55249 -12.04094 -11.84720 -11.63750 -11.46075 -11.33762 -11.19116 -11.18425 -10.92760 -10.75153 -10.32246 -10.23892 -10.14773 -9.95913 -9.65117 -8.66250 -8.63679 -8.53614 -8.16756 -7.66644 -6.98692 -5.75356 -3.09570 1.67869 1.87067 3.38571 3.46795 3.48269 3.87038 4.16183 4.36498 4.60568 4.78443 5.13466 5.20058 5.27321 5.34606 5.39368 5.45248 5.61543 5.68953 5.80114 5.89793 5.90750 6.00505 6.03722 6.12249 6.30219 6.32266 6.41153 6.51139 6.58024 6.63006 6.72937 6.80051 6.82218 6.85086 7.21298 7.32707 7.34700 7.62202 7.77163 8.15765 8.25460 9.12977 9.53111 9.80305 10.24782 11.25294 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.024011 B = 0.006801 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.828522 B = 4115.885457 C = 4504.248296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.073 4.073 3 C 0.273 3.727 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.077 0.923 7 C 0.005 3.995 8 N -0.877 5.877 9 Si 0.891 3.109 10 H -0.289 1.289 11 H -0.295 1.295 12 H -0.281 1.281 13 C 0.109 3.891 14 C 0.086 3.914 15 C -0.121 4.121 16 C -0.199 4.199 17 O -0.279 6.279 18 C 0.160 3.840 19 C -0.157 4.157 20 C -0.085 4.085 21 C -0.177 4.177 22 C -0.088 4.088 23 C -0.228 4.228 24 H 0.181 0.819 25 H 0.087 0.913 26 H 0.030 0.970 27 H 0.253 0.747 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 12.676 0.615 12.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 C -0.076 4.076 3 C 0.148 3.852 4 N -0.298 5.298 5 C -0.391 4.391 6 H 0.095 0.905 7 C -0.194 4.194 8 N -0.520 5.520 9 Si 0.721 3.279 10 H -0.216 1.216 11 H -0.222 1.222 12 H -0.207 1.207 13 C -0.019 4.019 14 C 0.045 3.955 15 C -0.178 4.178 16 C -0.257 4.257 17 O -0.192 6.192 18 C 0.113 3.887 19 C -0.176 4.176 20 C -0.103 4.103 21 C -0.195 4.195 22 C -0.106 4.106 23 C -0.246 4.246 24 H 0.198 0.802 25 H 0.105 0.895 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.764 12.356 0.632 12.396 hybrid contribution 0.133 -0.966 -0.485 1.089 sum 0.898 11.391 0.147 11.427 Atomic orbital electron populations 1.23821 0.94956 1.08572 1.04718 1.23693 0.94654 0.93247 0.96038 1.17772 0.83657 0.98671 0.85078 1.44177 1.74817 1.00605 1.10158 1.19155 1.33783 0.84388 1.01766 0.90530 1.24763 0.97136 0.97628 0.99877 1.70227 1.22970 1.23527 1.35255 0.86449 0.79499 0.83859 0.78128 1.21638 1.22163 1.20656 1.22030 0.94022 0.88333 0.97519 1.22801 0.91051 0.94010 0.87646 1.21613 0.99735 0.99686 0.96723 1.22939 1.02167 0.99045 1.01553 1.86328 1.42816 1.53520 1.36489 1.19018 0.92627 0.87862 0.89181 1.20424 1.00066 1.01119 0.95990 1.20849 0.96561 0.95548 0.97381 1.20874 0.94749 1.03164 1.00715 1.20891 0.98732 0.96710 0.94312 1.21931 0.97749 1.01772 1.03197 0.80169 0.89510 0.95169 0.93619 0.92143 0.91589 0.94508 0.91727 0.88594 0.90506 0.91498 0.92524 0.85758 0.86287 0.86861 0.86589 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.10 18.82 29.55 0.56 -6.54 16 2 C -0.07 -1.79 9.05 -37.12 -0.34 -2.13 16 3 C 0.27 6.54 5.43 -6.83 -0.04 6.50 16 4 N -0.58 -13.47 2.13 -176.57 -0.38 -13.84 16 5 C -0.26 -6.66 7.59 -15.05 -0.11 -6.78 16 6 H 0.08 1.91 7.95 -52.49 -0.42 1.50 16 7 C 0.01 0.14 4.85 -17.43 -0.08 0.06 16 8 N -0.88 -24.34 9.17 55.49 0.51 -23.83 16 9 Si 0.89 21.09 29.63 -169.99 -5.04 16.06 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.11 2.09 4.30 -4.04 -0.02 2.07 16 14 C 0.09 1.56 0.88 -90.62 -0.08 1.48 16 15 C -0.12 -2.36 7.69 37.16 0.29 -2.08 16 16 C -0.20 -2.93 8.08 37.15 0.30 -2.62 16 17 O -0.28 -5.51 7.23 -19.46 -0.14 -5.65 16 18 C 0.16 2.84 5.76 -39.22 -0.23 2.61 16 19 C -0.16 -2.61 9.99 -39.43 -0.39 -3.01 16 20 C -0.09 -1.20 10.04 -39.60 -0.40 -1.60 16 21 C -0.18 -2.35 10.04 -39.56 -0.40 -2.74 16 22 C -0.09 -1.21 10.04 -39.61 -0.40 -1.61 16 23 C -0.23 -3.57 5.79 -39.43 -0.23 -3.79 16 24 H 0.18 3.75 7.80 -54.09 -0.42 3.33 16 25 H 0.09 2.28 6.46 -51.93 -0.34 1.94 16 26 H 0.03 0.68 7.87 -51.93 -0.41 0.27 16 27 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 28 H 0.06 1.11 7.89 -51.93 -0.41 0.70 16 29 H 0.07 1.20 4.28 -51.93 -0.22 0.98 16 30 H 0.04 0.65 8.01 -51.93 -0.42 0.24 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.10 2.33 6.80 -51.93 -0.35 1.97 16 33 H 0.08 1.09 4.57 -51.93 -0.24 0.85 16 34 H 0.07 0.87 7.91 -51.92 -0.41 0.46 16 35 H 0.06 0.80 7.92 -51.93 -0.41 0.39 16 36 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 38 H 0.11 1.22 8.06 -52.48 -0.42 0.79 16 39 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.15 2.19 3.51 -52.48 -0.18 2.01 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -28.50 317.48 -7.31 -35.81 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.48 Total: 6.85 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -1.57 Total: -20.18 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.13 Total: -37.67 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.14 Total: -5.65 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.04 Total: 16.06 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.50 -7.31 -35.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262376225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.782 kcal (2) G-P(sol) polarization free energy of solvation -28.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds