Wall clock time and date at job start Mon Mar 30 2020 01:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46791 * 95.01117 * 3 2 1 5 5 C 1.36944 * 119.99643 * 272.22616 * 4 3 2 6 6 H 1.08001 * 120.00215 * 187.40569 * 5 4 3 7 7 C 1.38818 * 119.99864 * 7.40183 * 5 4 3 8 8 N 1.31615 * 119.99769 * 27.41352 * 7 5 4 9 9 Si 1.86801 * 119.99766 * 207.40785 * 7 5 4 10 10 H 1.48504 * 109.46644 * 94.99705 * 9 7 5 11 11 H 1.48498 * 109.46927 * 214.99548 * 9 7 5 12 12 H 1.48494 * 109.47393 * 334.99878 * 9 7 5 13 13 C 1.46495 * 120.00431 * 92.23043 * 4 3 2 14 14 C 1.53000 * 109.47129 * 269.99797 * 13 4 3 15 15 C 1.53003 * 109.46740 * 306.82125 * 14 13 4 16 16 C 1.52994 * 109.47381 * 186.82180 * 14 13 4 17 17 O 1.42893 * 109.47277 * 66.81643 * 14 13 4 18 18 C 1.35912 * 116.99628 * 62.15945 * 17 14 13 19 19 C 1.38728 * 120.05179 * 177.95677 * 18 17 14 20 20 C 1.38147 * 119.93979 * 179.97438 * 19 18 17 21 21 C 1.38269 * 120.05736 * 359.97438 * 20 19 18 22 22 C 1.38257 * 120.10986 * 0.04899 * 21 20 19 23 23 C 1.38150 * 120.05786 * 359.94864 * 22 21 20 24 24 H 4.40642 * 5.51377 * 180.02562 * 4 1 2 25 25 H 1.08993 * 109.46860 * 335.00750 * 3 2 1 26 26 H 1.09003 * 109.46867 * 215.00421 * 3 2 1 27 27 H 0.97003 * 119.99745 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47236 * 149.99839 * 13 4 3 29 29 H 1.09003 * 109.47055 * 29.99967 * 13 4 3 30 30 H 1.09005 * 109.46973 * 186.48262 * 15 14 13 31 31 H 1.09000 * 109.47581 * 306.47978 * 15 14 13 32 32 H 1.08997 * 109.47542 * 66.48747 * 15 14 13 33 33 H 1.09005 * 109.47059 * 281.89712 * 16 14 13 34 34 H 1.09008 * 109.47429 * 41.89336 * 16 14 13 35 35 H 1.09003 * 109.47518 * 161.89103 * 16 14 13 36 36 H 1.08000 * 120.03533 * 359.70250 * 19 18 17 37 37 H 1.08003 * 119.96914 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.94310 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.97267 * 179.97438 * 22 21 20 40 40 H 1.08005 * 120.02827 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.1215 -1.3760 5 6 3.3195 -1.0012 -2.1378 6 1 3.7906 -0.9248 -3.1066 7 6 2.9018 -2.2377 -1.6647 8 7 1.9004 -2.3127 -0.8139 9 14 3.7609 -3.7950 -2.2359 10 1 4.8100 -4.1700 -1.2539 11 1 2.7697 -4.8952 -2.3458 12 1 4.3862 -3.5576 -3.5617 13 6 3.4243 1.4434 -1.9369 14 6 2.1663 2.0008 -2.6058 15 6 1.6265 0.9789 -3.6084 16 6 2.5105 3.2999 -3.3370 17 8 1.1741 2.2624 -1.6114 18 6 1.4790 3.1881 -0.6642 19 6 0.5458 3.5222 0.3065 20 6 0.8584 4.4631 1.2685 21 6 2.1001 5.0713 1.2647 22 6 3.0316 4.7404 0.2981 23 6 2.7240 3.8001 -0.6661 24 1 -1.0501 0.0002 0.0001 25 1 3.0097 -0.9306 0.4342 26 1 3.0090 0.8426 0.5895 27 1 1.6083 -3.1767 -0.4836 28 1 4.2211 1.3577 -2.6757 29 1 3.7397 2.1155 -1.1388 30 1 0.8004 1.4192 -4.1669 31 1 2.4200 0.6928 -4.2987 32 1 1.2742 0.0966 -3.0740 33 1 2.5835 4.1142 -2.6161 34 1 3.4638 3.1849 -3.8531 35 1 1.7294 3.5262 -4.0630 36 1 -0.4257 3.0504 0.3075 37 1 0.1324 4.7233 2.0246 38 1 2.3424 5.8070 2.0174 39 1 4.0007 5.2171 0.2970 40 1 3.4521 3.5416 -1.4208 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262376225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:17 Heat of formation + Delta-G solvation = 88.354578 kcal Electronic energy + Delta-G solvation = -22320.564180 eV Core-core repulsion = 19297.233231 eV Total energy + Delta-G solvation = -3023.330948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.63397 -38.77274 -37.35091 -34.70512 -33.24270 -32.27420 -31.81993 -30.62393 -28.26049 -27.84146 -27.42446 -24.01236 -23.21880 -23.03876 -21.00048 -19.33699 -18.33496 -17.94633 -17.39735 -16.78855 -16.32865 -16.26550 -15.63101 -15.38400 -15.05591 -14.79127 -14.43207 -14.28902 -14.03095 -13.47333 -13.33186 -13.20379 -12.88851 -12.79963 -12.76054 -12.63134 -12.49492 -12.37058 -12.12843 -11.95952 -11.58672 -11.40227 -11.14546 -10.55378 -10.48923 -10.07742 -9.70690 -9.08776 -8.68100 -7.75044 -5.08279 0.54902 0.72561 1.48519 1.52803 1.58708 2.45649 2.59845 2.69021 2.88376 3.02196 3.32140 3.75393 4.01427 4.10203 4.13792 4.18714 4.24107 4.31211 4.39771 4.61246 4.63600 4.67463 4.78399 4.81999 4.89904 4.92718 5.01218 5.08965 5.14166 5.26847 5.28539 5.38114 5.56632 5.63194 5.70321 5.72602 5.74683 5.81037 6.10785 6.29539 6.87077 7.15006 7.65258 7.90009 8.31804 9.24231 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.024011 B = 0.006801 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.828522 B = 4115.885457 C = 4504.248296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.088 4.088 3 C 0.281 3.719 4 N -0.588 5.588 5 C -0.250 4.250 6 H 0.081 0.919 7 C -0.046 4.046 8 N -0.906 5.906 9 Si 0.947 3.053 10 H -0.293 1.293 11 H -0.308 1.308 12 H -0.271 1.271 13 C 0.105 3.895 14 C 0.087 3.913 15 C -0.113 4.113 16 C -0.189 4.189 17 O -0.307 6.307 18 C 0.134 3.866 19 C -0.180 4.180 20 C -0.086 4.086 21 C -0.172 4.172 22 C -0.087 4.087 23 C -0.236 4.236 24 H 0.200 0.800 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.242 0.758 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 15.050 0.498 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C -0.091 4.091 3 C 0.155 3.845 4 N -0.307 5.307 5 C -0.380 4.380 6 H 0.099 0.901 7 C -0.242 4.242 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.220 1.220 11 H -0.236 1.236 12 H -0.195 1.195 13 C -0.021 4.021 14 C 0.047 3.953 15 C -0.170 4.170 16 C -0.246 4.246 17 O -0.221 6.221 18 C 0.088 3.912 19 C -0.199 4.199 20 C -0.104 4.104 21 C -0.190 4.190 22 C -0.105 4.105 23 C -0.254 4.254 24 H 0.217 0.783 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.144 14.767 0.496 14.930 hybrid contribution -0.302 -1.570 -0.416 1.652 sum 1.842 13.197 0.080 13.325 Atomic orbital electron populations 1.24381 0.95786 1.08156 1.04455 1.23936 0.95160 0.93599 0.96359 1.17581 0.83537 0.97645 0.85690 1.44281 1.74696 1.01813 1.09877 1.19394 1.31880 0.85111 1.01589 0.90116 1.25332 0.98000 0.99901 1.00988 1.70374 1.24534 1.22950 1.37224 0.85550 0.77992 0.80767 0.77956 1.22032 1.23617 1.19544 1.22250 0.94867 0.86664 0.98339 1.22664 0.89911 0.95296 0.87421 1.21489 1.00377 0.98221 0.96894 1.22830 1.03306 0.97017 1.01495 1.86276 1.43530 1.54798 1.37453 1.19252 0.93970 0.88510 0.89483 1.20555 0.99775 1.02465 0.97132 1.21179 0.97711 0.94520 0.96978 1.21300 0.93936 1.02890 1.00880 1.21301 1.00107 0.95751 0.93341 1.22027 0.97001 1.02292 1.04100 0.78277 0.92363 0.93834 0.94829 0.90913 0.90185 0.93380 0.90903 0.93605 0.89709 0.89414 0.92091 0.87138 0.83908 0.83666 0.83514 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.88 18.82 74.32 1.40 -13.48 16 2 C -0.09 -4.37 9.05 31.13 0.28 -4.09 16 3 C 0.28 13.65 5.43 84.58 0.46 14.10 16 4 N -0.59 -27.31 2.13 -712.54 -1.52 -28.82 16 5 C -0.25 -12.73 7.59 84.03 0.64 -12.09 16 6 H 0.08 3.98 7.95 -2.91 -0.02 3.95 16 7 C -0.05 -2.48 4.85 84.86 0.41 -2.06 16 8 N -0.91 -51.82 9.17 21.65 0.20 -51.62 16 9 Si 0.95 44.19 29.63 68.60 2.03 46.22 16 10 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 11 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.10 3.88 4.30 86.38 0.37 4.26 16 14 C 0.09 3.08 0.88 -10.79 -0.01 3.07 16 15 C -0.11 -4.39 7.69 71.98 0.55 -3.83 16 16 C -0.19 -5.06 8.08 71.98 0.58 -4.48 16 17 O -0.31 -12.07 7.23 -92.56 -0.67 -12.74 16 18 C 0.13 4.62 5.76 22.50 0.13 4.75 16 19 C -0.18 -5.89 9.99 22.37 0.22 -5.67 16 20 C -0.09 -2.23 10.04 22.26 0.22 -2.00 16 21 C -0.17 -3.92 10.04 22.28 0.22 -3.70 16 22 C -0.09 -2.07 10.04 22.25 0.22 -1.85 16 23 C -0.24 -6.80 5.79 22.37 0.13 -6.67 16 24 H 0.20 8.43 7.80 -4.41 -0.03 8.40 16 25 H 0.06 3.15 6.46 -2.39 -0.02 3.14 16 26 H 0.04 1.95 7.87 -2.39 -0.02 1.93 16 27 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 28 H 0.07 2.50 7.89 -2.39 -0.02 2.48 16 29 H 0.08 2.76 4.28 -2.39 -0.01 2.75 16 30 H 0.05 1.70 8.01 -2.38 -0.02 1.68 16 31 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.04 2.25 6.80 -2.39 -0.02 2.24 16 33 H 0.08 2.17 4.57 -2.38 -0.01 2.15 16 34 H 0.09 1.97 7.91 -2.38 -0.02 1.95 16 35 H 0.06 1.59 7.92 -2.39 -0.02 1.57 16 36 H 0.11 3.78 8.06 -2.91 -0.02 3.75 16 37 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 39 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.15 4.11 3.51 -2.91 -0.01 4.10 16 Total: -1.00 -62.58 317.48 6.91 -55.68 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 1.02 Total: 25.04 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 5.84 Total: -33.76 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -1.32 Total: -80.44 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.67 Total: -12.74 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -62.58 6.91 -55.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262376225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.030 kcal (2) G-P(sol) polarization free energy of solvation -62.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds