Wall clock time and date at job start Mon Mar 30 2020 01:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99633 * 2 1 3 5 5 C 1.50706 * 109.46953 * 60.00071 * 4 2 1 6 6 H 1.07999 * 119.99816 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00344 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99769 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00300 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46691 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46740 * 119.99592 * 9 7 5 12 12 H 1.48497 * 109.47025 * 239.99950 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 14 14 N 1.46500 * 109.46998 * 299.99786 * 13 2 1 15 15 C 1.34769 * 120.00237 * 180.02562 * 14 13 2 16 16 O 1.21282 * 119.99854 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00461 * 180.02562 * 15 14 13 18 18 F 1.39901 * 110.74920 * 54.29368 * 17 15 14 19 19 C 1.55303 * 110.85104 * 177.76743 * 17 15 14 20 20 C 1.55209 * 100.82525 * 152.17889 * 19 17 15 21 21 O 1.43646 * 105.25799 * 323.81965 * 20 19 17 22 22 C 1.43234 * 109.97750 * 24.28627 * 21 20 19 23 23 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 25 25 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 28 28 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 31 31 H 0.97000 * 120.00540 * 180.02562 * 8 7 5 32 32 H 1.08993 * 109.46955 * 60.00011 * 13 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 13 2 1 34 34 H 0.97010 * 119.99909 * 359.97438 * 14 13 2 35 35 H 1.08993 * 111.12584 * 270.24038 * 19 17 15 36 36 H 1.09002 * 111.12398 * 34.40833 * 19 17 15 37 37 H 1.08994 * 110.37069 * 204.80159 * 20 19 17 38 38 H 1.09000 * 110.21135 * 82.75406 * 20 19 17 39 39 H 1.08999 * 109.83082 * 238.77531 * 22 21 20 40 40 H 1.08992 * 109.90633 * 117.84462 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8703 -0.4823 -3.7320 8 7 2.6264 -1.5515 -3.8526 9 14 1.2471 0.3979 -5.2572 10 1 0.4227 1.5650 -4.8530 11 1 2.4018 0.8644 -6.0660 12 1 0.4219 -0.5358 -6.0650 13 6 2.0400 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5749 -1.4769 3.7808 17 6 1.3749 0.2193 4.9000 18 9 -0.0178 0.3476 4.8640 19 6 1.8288 -0.5192 6.1886 20 6 1.8758 0.6586 7.1984 21 8 2.3431 1.7867 6.4418 22 6 2.0499 1.5994 5.0523 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7217 -1.2490 30 1 1.6766 -1.7490 -1.2492 31 1 2.8608 -1.8830 -4.7336 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 0.9943 0.7583 2.3564 35 1 1.0978 -1.2697 6.4894 36 1 2.8155 -0.9640 6.0596 37 1 2.5677 0.4348 8.0103 38 1 0.8795 0.8551 7.5944 39 1 2.9728 1.6255 4.4729 40 1 1.3743 2.3817 4.7068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325431955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:11 Heat of formation + Delta-G solvation = -146.851354 kcal Electronic energy + Delta-G solvation = -21881.291265 eV Core-core repulsion = 18416.991798 eV Total energy + Delta-G solvation = -3464.299467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.25006 -40.14889 -38.85734 -37.20880 -33.83251 -32.29105 -32.00135 -29.83128 -27.20633 -26.58094 -26.43131 -23.94283 -23.08436 -22.24197 -20.33781 -18.83468 -17.74182 -17.28998 -16.49371 -16.35153 -15.65905 -15.46132 -15.13973 -14.98568 -14.54696 -14.41637 -14.12063 -13.56248 -13.40828 -13.17550 -12.86159 -12.49249 -12.24944 -12.13803 -12.06426 -11.91871 -11.28060 -11.20461 -11.07182 -10.87648 -10.70271 -10.48819 -10.29949 -10.08064 -9.95739 -9.92723 -9.24729 -8.97931 -8.97414 -8.40231 -6.04053 -4.05569 2.28744 2.88494 3.27761 3.33706 3.36141 3.38384 3.61680 3.94764 4.39028 4.41387 4.44746 4.57555 4.79543 5.18537 5.30140 5.30897 5.31586 5.39191 5.44586 5.52331 5.65495 5.68383 6.08147 6.12273 6.15411 6.29515 6.35882 6.43129 6.56724 6.63351 6.98212 7.00837 7.04505 7.40689 7.58676 7.69743 7.94158 8.01382 8.35742 8.99293 9.58018 11.07422 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.042674 B = 0.003654 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.978419 B = 7660.452330 C = 7828.619236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.125 3.875 14 N -0.706 5.706 15 C 0.504 3.496 16 O -0.522 6.522 17 C 0.065 3.935 18 F -0.182 7.182 19 C -0.159 4.159 20 C 0.049 3.951 21 O -0.372 6.372 22 C 0.041 3.959 23 H 0.029 0.971 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.028 0.972 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.260 0.740 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.403 0.597 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 5.382 18.754 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.073 4.073 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.003 3.997 14 N -0.357 5.357 15 C 0.286 3.714 16 O -0.398 6.398 17 C 0.043 3.957 18 F -0.162 7.162 19 C -0.197 4.197 20 C -0.027 4.027 21 O -0.291 6.291 22 C -0.036 4.036 23 H 0.048 0.952 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.239 0.761 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.290 4.735 18.753 19.477 hybrid contribution -0.863 0.536 -1.157 1.539 sum -3.153 5.271 17.596 18.637 Atomic orbital electron populations 1.21778 0.95120 1.01297 1.00396 1.20930 0.95619 0.95921 0.94877 1.21779 1.00612 0.95798 1.00380 1.19097 0.96382 0.95246 0.89405 1.21209 1.31230 1.12094 0.90463 0.92157 1.25014 0.95277 0.95066 0.99128 1.69970 1.36943 1.23037 1.23404 0.86585 0.78624 0.79681 0.83394 1.19777 1.21108 1.21109 1.21779 0.99176 0.96235 0.82550 1.46238 1.52011 1.31797 1.05657 1.20168 0.81825 0.85015 0.84423 1.90744 1.37759 1.25083 1.86222 1.22741 0.77596 0.98330 0.96994 1.92941 1.28987 1.96814 1.97458 1.23777 1.05642 0.98827 0.91409 1.23548 1.00489 0.84012 0.94646 1.88447 1.81702 1.42162 1.16828 1.23714 1.01226 0.93941 0.84757 0.95210 0.91240 0.93271 0.93224 0.91214 0.95293 0.96279 0.96293 0.93051 0.91365 0.91281 0.76147 0.87962 0.86919 0.88503 0.91357 0.88828 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.32 7.65 -34.44 -0.26 -13.59 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.12 2.10 4.56 -4.04 -0.02 2.08 16 14 N -0.71 -9.86 4.96 -60.29 -0.30 -10.16 16 15 C 0.50 7.16 6.77 -10.99 -0.07 7.08 16 16 O -0.52 -9.04 15.68 5.56 0.09 -8.96 16 17 C 0.07 0.74 1.44 -89.82 -0.13 0.61 16 18 F -0.18 -2.16 16.97 2.25 0.04 -2.12 16 19 C -0.16 -1.54 6.13 -24.34 -0.15 -1.69 16 20 C 0.05 0.42 7.78 38.33 0.30 0.71 16 21 O -0.37 -4.04 11.36 -35.23 -0.40 -4.44 16 22 C 0.04 0.42 7.22 37.88 0.27 0.69 16 23 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 24 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 28 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.40 4.89 6.16 -40.82 -0.25 4.64 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.11 1.17 7.34 -51.93 -0.38 0.79 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.92 7.81 -51.93 -0.41 0.52 16 40 H 0.09 0.80 8.11 -51.93 -0.42 0.38 16 LS Contribution 324.44 15.07 4.89 4.89 Total: -1.00 -30.22 324.44 -5.82 -36.04 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.10 Total: 1.24 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 0.24 Total: -7.08 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.44 Total: -35.48 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.31 Total: -13.40 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.22 -5.82 -36.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325431955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.808 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds