Wall clock time and date at job start Mon Mar 30 2020 01:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99633 * 2 1 3 5 5 C 1.50706 * 109.46953 * 60.00071 * 4 2 1 6 6 H 1.07999 * 119.99816 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00344 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99769 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00300 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46691 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46740 * 119.99592 * 9 7 5 12 12 H 1.48497 * 109.47025 * 239.99950 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 14 14 N 1.46500 * 109.46998 * 299.99786 * 13 2 1 15 15 C 1.34769 * 120.00237 * 180.02562 * 14 13 2 16 16 O 1.21282 * 119.99854 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00461 * 180.02562 * 15 14 13 18 18 F 1.39901 * 110.74920 * 54.29368 * 17 15 14 19 19 C 1.55303 * 110.85104 * 177.76743 * 17 15 14 20 20 C 1.55209 * 100.82525 * 152.17889 * 19 17 15 21 21 O 1.43646 * 105.25799 * 323.81965 * 20 19 17 22 22 C 1.43234 * 109.97750 * 24.28627 * 21 20 19 23 23 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 25 25 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 28 28 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 31 31 H 0.97000 * 120.00540 * 180.02562 * 8 7 5 32 32 H 1.08993 * 109.46955 * 60.00011 * 13 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 13 2 1 34 34 H 0.97010 * 119.99909 * 359.97438 * 14 13 2 35 35 H 1.08993 * 111.12584 * 270.24038 * 19 17 15 36 36 H 1.09002 * 111.12398 * 34.40833 * 19 17 15 37 37 H 1.08994 * 110.37069 * 204.80159 * 20 19 17 38 38 H 1.09000 * 110.21135 * 82.75406 * 20 19 17 39 39 H 1.08999 * 109.83082 * 238.77531 * 22 21 20 40 40 H 1.08992 * 109.90633 * 117.84462 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8703 -0.4823 -3.7320 8 7 2.6264 -1.5515 -3.8526 9 14 1.2471 0.3979 -5.2572 10 1 0.4227 1.5650 -4.8530 11 1 2.4018 0.8644 -6.0660 12 1 0.4219 -0.5358 -6.0650 13 6 2.0400 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5749 -1.4769 3.7808 17 6 1.3749 0.2193 4.9000 18 9 -0.0178 0.3476 4.8640 19 6 1.8288 -0.5192 6.1886 20 6 1.8758 0.6586 7.1984 21 8 2.3431 1.7867 6.4418 22 6 2.0499 1.5994 5.0523 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7217 -1.2490 30 1 1.6766 -1.7490 -1.2492 31 1 2.8608 -1.8830 -4.7336 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 0.9943 0.7583 2.3564 35 1 1.0978 -1.2697 6.4894 36 1 2.8155 -0.9640 6.0596 37 1 2.5677 0.4348 8.0103 38 1 0.8795 0.8551 7.5944 39 1 2.9728 1.6255 4.4729 40 1 1.3743 2.3817 4.7068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325431955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:10 Heat of formation + Delta-G solvation = -166.877928 kcal Electronic energy + Delta-G solvation = -21882.159683 eV Core-core repulsion = 18416.991798 eV Total energy + Delta-G solvation = -3465.167885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.16312 -41.25740 -39.79384 -38.65482 -35.38478 -34.04326 -32.93536 -30.65303 -29.09544 -27.98346 -27.76434 -25.35099 -24.25937 -23.32767 -21.45934 -20.12041 -18.98991 -18.38247 -18.14467 -17.50934 -16.62540 -16.49024 -16.39161 -16.22971 -15.92634 -15.60180 -15.21951 -14.89606 -14.71703 -14.42013 -14.16056 -13.95475 -13.80386 -13.42547 -12.90928 -12.84736 -12.70926 -12.64223 -12.62526 -12.35605 -12.25580 -12.06008 -11.96051 -11.56642 -11.28750 -10.93851 -10.83121 -10.68961 -10.52285 -10.26550 -8.14502 -6.21977 1.15735 1.41729 1.43287 1.54501 1.77009 2.44219 2.56996 2.75728 3.10375 3.20480 3.44243 3.60908 3.83288 3.91533 4.04521 4.12781 4.19191 4.46965 4.57449 4.65222 4.67804 4.69187 4.72306 4.75921 4.93159 4.93779 5.03716 5.11203 5.26309 5.41926 5.49459 5.52014 5.55470 5.72201 5.78451 5.89634 6.23770 6.32395 6.88586 6.93391 7.45991 8.98154 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.042674 B = 0.003654 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.978419 B = 7660.452330 C = 7828.619236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.065 4.065 3 C -0.124 4.124 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.073 0.927 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.957 3.043 10 H -0.257 1.257 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.138 3.862 14 N -0.696 5.696 15 C 0.504 3.496 16 O -0.556 6.556 17 C 0.070 3.930 18 F -0.182 7.182 19 C -0.159 4.159 20 C 0.050 3.950 21 O -0.388 6.388 22 C 0.043 3.957 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.069 0.931 29 H -0.011 1.011 30 H -0.013 1.013 31 H 0.259 0.741 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.415 0.585 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 7.496 20.149 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.066 4.066 3 C -0.181 4.181 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.783 3.217 10 H -0.181 1.181 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.014 3.986 14 N -0.348 5.348 15 C 0.287 3.713 16 O -0.435 6.435 17 C 0.048 3.952 18 F -0.162 7.162 19 C -0.197 4.197 20 C -0.025 4.025 21 O -0.307 6.307 22 C -0.034 4.034 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.007 0.993 30 H 0.005 0.995 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.135 0.865 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.666 6.886 20.168 21.624 hybrid contribution -0.428 -0.172 -1.536 1.604 sum -4.094 6.714 18.632 20.223 Atomic orbital electron populations 1.21716 0.93743 1.01024 1.01621 1.20728 0.96604 0.96488 0.92773 1.21719 1.00203 0.94442 1.01739 1.18972 0.94447 0.94192 0.92151 1.21625 1.30348 1.12045 0.91062 0.90925 1.25924 0.95680 0.95851 1.02671 1.70118 1.38819 1.24972 1.24036 0.85510 0.78051 0.78833 0.79337 1.18060 1.21068 1.21149 1.21372 0.98393 0.95519 0.83292 1.46030 1.52026 1.31922 1.04817 1.20688 0.80990 0.84512 0.85062 1.90735 1.39265 1.26690 1.86787 1.22677 0.77521 0.99208 0.95760 1.92945 1.29036 1.96857 1.97384 1.23820 1.05318 0.99571 0.91001 1.23711 1.01838 0.82575 0.94399 1.88431 1.82110 1.43076 1.17100 1.23764 1.01515 0.93358 0.84792 0.91470 0.92419 0.94363 0.93964 0.92498 0.91202 0.99262 0.99504 0.93180 0.93043 0.92455 0.74680 0.87012 0.87906 0.86538 0.90028 0.88799 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 2 C -0.07 -2.37 0.54 -52.18 -0.03 -2.40 16 3 C -0.12 -3.93 8.05 71.98 0.58 -3.35 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -26.94 7.65 25.60 0.20 -26.74 16 6 H 0.07 3.58 5.68 -2.91 -0.02 3.56 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -56.34 13.29 21.45 0.28 -56.05 16 9 Si 0.96 43.07 29.54 68.60 2.03 45.09 16 10 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 13 C 0.14 4.64 4.56 86.38 0.39 5.04 16 14 N -0.70 -18.24 4.96 -463.06 -2.30 -20.54 16 15 C 0.50 13.66 6.77 87.66 0.59 14.25 16 16 O -0.56 -19.18 15.68 -3.04 -0.05 -19.23 16 17 C 0.07 1.44 1.44 -10.28 -0.01 1.42 16 18 F -0.18 -3.80 16.97 44.97 0.76 -3.04 16 19 C -0.16 -2.78 6.13 32.14 0.20 -2.59 16 20 C 0.05 0.71 7.78 72.74 0.57 1.28 16 21 O -0.39 -7.38 11.36 -148.98 -1.69 -9.07 16 22 C 0.04 0.75 7.22 72.45 0.52 1.28 16 23 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 24 H 0.06 2.03 6.62 -2.39 -0.02 2.02 16 25 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.96 6.62 -2.39 -0.02 1.95 16 28 H 0.07 1.64 6.86 -2.39 -0.02 1.62 16 29 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.41 8.72 6.16 -92.70 -0.57 8.15 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.10 2.03 7.34 -2.39 -0.02 2.01 16 37 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 1.64 7.81 -2.39 -0.02 1.62 16 40 H 0.11 1.53 8.11 -2.39 -0.02 1.51 16 Total: -1.00 -66.52 324.44 3.67 -62.84 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.47 Total: 12.98 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 4.17 Total: -12.98 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -2.01 Total: -76.59 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -1.74 Total: -28.31 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.76 Total: -3.04 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -66.52 3.67 -62.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325431955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.036 kcal (2) G-P(sol) polarization free energy of solvation -66.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds