Wall clock time and date at job start Mon Mar 30 2020 01:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 5 5 C 1.50700 * 109.47008 * 59.99579 * 4 2 1 6 6 H 1.07997 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00420 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46710 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47158 * 119.99784 * 9 7 5 12 12 H 1.48502 * 109.46769 * 240.00242 * 9 7 5 13 13 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 14 14 N 1.46498 * 109.47059 * 299.99645 * 13 2 1 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 2 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 F 1.39899 * 110.43367 * 310.70628 * 17 15 14 19 19 C 1.54807 * 110.49057 * 188.15777 * 17 15 14 20 20 C 1.55222 * 101.98587 * 220.51846 * 19 17 15 21 21 O 1.44378 * 103.56982 * 36.88112 * 20 19 17 22 22 C 1.43747 * 106.97406 * 320.01227 * 21 20 19 23 23 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 24 24 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 25 25 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 28 28 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 29 29 H 1.08990 * 109.47021 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.46620 * 300.00017 * 4 2 1 31 31 H 0.97000 * 120.00497 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47066 * 179.97438 * 13 2 1 33 33 H 1.08994 * 109.46974 * 60.00060 * 13 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 35 35 H 1.09002 * 110.90935 * 338.64400 * 19 17 15 36 36 H 1.09000 * 110.90868 * 102.24394 * 19 17 15 37 37 H 1.08999 * 110.52012 * 278.38369 * 20 19 17 38 38 H 1.09005 * 110.77669 * 155.50452 * 20 19 17 39 39 H 1.08996 * 109.87710 * 267.08999 * 22 21 20 40 40 H 1.08996 * 110.00506 * 146.00451 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 0.4232 1.5657 -4.8530 11 1 2.4041 0.8664 -6.0651 12 1 0.4241 -0.5338 -6.0660 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8728 -0.4943 3.6694 16 8 2.5702 -1.4804 3.7807 17 6 1.3655 0.2124 4.9000 18 9 1.6108 1.5868 4.8100 19 6 2.0248 -0.3736 6.1721 20 6 0.8322 -0.4121 7.1648 21 8 -0.2909 -0.7702 6.3313 22 6 -0.1398 -0.0552 5.0935 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9564 0.8899 29 1 3.1300 -0.7208 -1.2496 30 1 1.6767 -1.7489 -1.2493 31 1 2.8622 -1.8818 -4.7337 32 1 3.1301 -0.7216 1.2490 33 1 1.6768 -1.7489 1.2492 34 1 0.9939 0.7579 2.3564 35 1 2.4074 -1.3770 5.9850 36 1 2.8163 0.2811 6.5369 37 1 0.6785 0.5683 7.6155 38 1 0.9944 -1.1662 7.9351 39 1 -0.6808 0.8898 5.1429 40 1 -0.5186 -0.6562 4.2669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325431956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:14 Heat of formation + Delta-G solvation = -146.462877 kcal Electronic energy + Delta-G solvation = -21901.443260 eV Core-core repulsion = 18437.160638 eV Total energy + Delta-G solvation = -3464.282622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.25054 -40.18248 -38.82207 -37.18188 -33.81051 -32.24180 -31.94311 -29.73994 -27.19437 -26.57143 -26.41017 -24.03886 -23.16441 -22.15431 -20.27121 -18.80820 -17.69392 -17.22599 -16.60976 -16.36332 -15.71583 -15.34978 -15.11726 -14.87163 -14.54137 -14.43418 -14.13194 -13.58660 -13.36736 -13.14358 -12.84802 -12.44049 -12.23594 -12.11724 -11.96359 -11.91264 -11.24823 -11.15795 -11.06480 -10.87039 -10.69498 -10.48219 -10.32364 -10.26440 -9.94691 -9.87304 -9.23448 -8.96557 -8.95265 -8.39595 -6.03393 -4.04899 2.32789 2.93731 3.28157 3.36470 3.38695 3.42174 3.67903 3.93383 4.39056 4.42965 4.49229 4.65021 4.79920 5.15708 5.26037 5.30222 5.32210 5.38957 5.45837 5.53716 5.67014 5.71033 6.09381 6.13805 6.16868 6.30719 6.31078 6.38924 6.57621 6.64722 6.99216 7.01749 7.05527 7.43861 7.59538 7.70806 7.94869 8.04866 8.36520 8.99992 9.58641 11.08066 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.042415 B = 0.003667 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.982576 B = 7632.847568 C = 7761.211705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.129 4.129 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.125 3.875 14 N -0.707 5.707 15 C 0.502 3.498 16 O -0.522 6.522 17 C 0.067 3.933 18 F -0.184 7.184 19 C -0.166 4.166 20 C 0.046 3.954 21 O -0.364 6.364 22 C 0.036 3.964 23 H 0.028 0.972 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.029 0.971 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.260 0.740 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.403 0.597 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 5.091 19.095 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.073 4.073 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.003 3.997 14 N -0.358 5.358 15 C 0.284 3.716 16 O -0.398 6.398 17 C 0.045 3.955 18 F -0.165 7.165 19 C -0.204 4.204 20 C -0.030 4.030 21 O -0.282 6.282 22 C -0.042 4.042 23 H 0.047 0.953 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.239 0.761 35 H 0.134 0.866 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.772 4.157 19.060 19.870 hybrid contribution -0.291 1.115 -1.128 1.612 sum -4.063 5.273 17.933 19.128 Atomic orbital electron populations 1.21781 0.95168 1.01251 1.00361 1.20931 0.95572 0.95953 0.94891 1.21776 1.00632 0.95785 1.00388 1.19096 0.96400 0.95235 0.89405 1.21209 1.31216 1.12095 0.90468 0.92160 1.25015 0.95279 0.95066 0.99121 1.69970 1.36934 1.23055 1.23393 0.86588 0.78621 0.79686 0.83405 1.19780 1.21112 1.21108 1.21768 0.99239 0.96140 0.82563 1.46209 1.52434 1.31543 1.05634 1.20249 0.81400 0.85379 0.84564 1.90729 1.36974 1.25988 1.86101 1.22592 0.98447 0.77479 0.96997 1.92936 1.95444 1.30824 1.97290 1.23738 0.99293 1.05307 0.92042 1.23697 0.83964 1.01555 0.93817 1.88944 1.45739 1.67722 1.25806 1.23749 0.91907 0.99287 0.89230 0.95312 0.91217 0.93230 0.93279 0.91265 0.95191 0.96290 0.96274 0.93054 0.91395 0.91321 0.76148 0.86577 0.88209 0.91448 0.87749 0.89637 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 2 C -0.07 -1.35 0.54 -154.50 -0.08 -1.43 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.37 7.65 -34.44 -0.26 -13.63 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 C 0.13 2.14 4.56 -4.04 -0.02 2.12 16 14 N -0.71 -10.05 4.94 -60.30 -0.30 -10.35 16 15 C 0.50 7.29 6.66 -10.98 -0.07 7.22 16 16 O -0.52 -9.24 15.42 5.55 0.09 -9.16 16 17 C 0.07 0.76 1.55 -90.24 -0.14 0.62 16 18 F -0.18 -2.14 16.82 2.25 0.04 -2.10 16 19 C -0.17 -1.64 6.40 -24.60 -0.16 -1.80 16 20 C 0.05 0.38 7.72 38.33 0.30 0.68 16 21 O -0.36 -4.03 11.52 -35.23 -0.41 -4.43 16 22 C 0.04 0.37 7.22 37.73 0.27 0.64 16 23 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 24 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 28 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.40 4.98 6.15 -40.82 -0.25 4.72 16 35 H 0.12 1.31 6.80 -51.93 -0.35 0.96 16 36 H 0.10 0.84 8.12 -51.93 -0.42 0.42 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 40 H 0.10 1.05 7.68 -51.93 -0.40 0.65 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -30.41 323.62 -5.82 -36.23 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.06 Total: 1.54 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 0.22 Total: -7.17 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.44 Total: -35.74 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.32 Total: -13.59 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.41 -5.82 -36.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325431956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.230 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds