Wall clock time and date at job start Mon Mar 30 2020 01:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 5 5 C 1.50700 * 109.47008 * 59.99579 * 4 2 1 6 6 H 1.07997 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00420 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46710 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47158 * 119.99784 * 9 7 5 12 12 H 1.48502 * 109.46769 * 240.00242 * 9 7 5 13 13 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 14 14 N 1.46498 * 109.47059 * 299.99645 * 13 2 1 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 2 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 F 1.39899 * 110.43367 * 310.70628 * 17 15 14 19 19 C 1.54807 * 110.49057 * 188.15777 * 17 15 14 20 20 C 1.55222 * 101.98587 * 220.51846 * 19 17 15 21 21 O 1.44378 * 103.56982 * 36.88112 * 20 19 17 22 22 C 1.43747 * 106.97406 * 320.01227 * 21 20 19 23 23 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 24 24 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 25 25 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 28 28 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 29 29 H 1.08990 * 109.47021 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.46620 * 300.00017 * 4 2 1 31 31 H 0.97000 * 120.00497 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47066 * 179.97438 * 13 2 1 33 33 H 1.08994 * 109.46974 * 60.00060 * 13 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 35 35 H 1.09002 * 110.90935 * 338.64400 * 19 17 15 36 36 H 1.09000 * 110.90868 * 102.24394 * 19 17 15 37 37 H 1.08999 * 110.52012 * 278.38369 * 20 19 17 38 38 H 1.09005 * 110.77669 * 155.50452 * 20 19 17 39 39 H 1.08996 * 109.87710 * 267.08999 * 22 21 20 40 40 H 1.08996 * 110.00506 * 146.00451 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 0.4232 1.5657 -4.8530 11 1 2.4041 0.8664 -6.0651 12 1 0.4241 -0.5338 -6.0660 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8728 -0.4943 3.6694 16 8 2.5702 -1.4804 3.7807 17 6 1.3655 0.2124 4.9000 18 9 1.6108 1.5868 4.8100 19 6 2.0248 -0.3736 6.1721 20 6 0.8322 -0.4121 7.1648 21 8 -0.2909 -0.7702 6.3313 22 6 -0.1398 -0.0552 5.0935 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9564 0.8899 29 1 3.1300 -0.7208 -1.2496 30 1 1.6767 -1.7489 -1.2493 31 1 2.8622 -1.8818 -4.7337 32 1 3.1301 -0.7216 1.2490 33 1 1.6768 -1.7489 1.2492 34 1 0.9939 0.7579 2.3564 35 1 2.4074 -1.3770 5.9850 36 1 2.8163 0.2811 6.5369 37 1 0.6785 0.5683 7.6155 38 1 0.9944 -1.1662 7.9351 39 1 -0.6808 0.8898 5.1429 40 1 -0.5186 -0.6562 4.2669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325431956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:13 Heat of formation + Delta-G solvation = -166.799177 kcal Electronic energy + Delta-G solvation = -21902.325108 eV Core-core repulsion = 18437.160638 eV Total energy + Delta-G solvation = -3465.164470 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.15334 -41.29086 -39.78810 -38.63773 -35.38291 -34.03585 -32.85010 -30.56859 -29.09230 -27.98685 -27.75871 -25.36662 -24.41186 -23.27215 -21.40316 -20.10927 -18.96115 -18.38180 -18.07407 -17.59725 -16.76280 -16.44946 -16.34207 -16.18931 -15.78548 -15.61232 -15.25982 -14.90440 -14.71476 -14.42153 -14.17613 -13.95585 -13.79555 -13.32396 -12.90952 -12.76734 -12.70988 -12.64126 -12.61990 -12.36003 -12.25425 -11.98667 -11.95320 -11.56991 -11.34835 -10.98126 -10.87310 -10.73434 -10.52467 -10.26092 -8.14560 -6.22179 1.18063 1.41740 1.43172 1.54508 1.79469 2.44186 2.67894 2.80165 3.10029 3.20347 3.41114 3.69628 3.89853 3.91261 4.04078 4.14685 4.18836 4.43776 4.55615 4.65045 4.66994 4.68418 4.72466 4.75418 4.93107 4.93287 5.04571 5.10834 5.26810 5.41613 5.49126 5.51488 5.55129 5.61232 5.78123 5.89355 6.24705 6.32556 6.90183 6.93165 7.45811 8.98111 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.042415 B = 0.003667 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.982576 B = 7632.847568 C = 7761.211705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.065 4.065 3 C -0.123 4.123 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.957 3.043 10 H -0.257 1.257 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.138 3.862 14 N -0.697 5.697 15 C 0.500 3.500 16 O -0.558 6.558 17 C 0.073 3.927 18 F -0.182 7.182 19 C -0.167 4.167 20 C 0.048 3.952 21 O -0.383 6.383 22 C 0.038 3.962 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.067 0.933 29 H -0.013 1.013 30 H -0.012 1.012 31 H 0.259 0.741 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.415 0.585 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.809 7.290 20.580 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.066 4.066 3 C -0.181 4.181 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.180 1.180 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.014 3.986 14 N -0.349 5.349 15 C 0.284 3.716 16 O -0.437 6.437 17 C 0.051 3.949 18 F -0.162 7.162 19 C -0.205 4.205 20 C -0.028 4.028 21 O -0.302 6.302 22 C -0.040 4.040 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.007 0.993 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.253 0.747 35 H 0.116 0.884 36 H 0.133 0.867 37 H 0.107 0.893 38 H 0.140 0.860 39 H 0.128 0.872 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.414 6.396 20.564 22.206 hybrid contribution 0.257 0.399 -1.536 1.607 sum -5.156 6.795 19.029 20.853 Atomic orbital electron populations 1.21720 0.93391 1.01228 1.01748 1.20729 0.96891 0.96227 0.92737 1.21711 0.99993 0.94719 1.01640 1.18971 0.94336 0.94286 0.92175 1.21623 1.30361 1.12060 0.91046 0.90894 1.25933 0.95667 0.95853 1.02690 1.70121 1.38805 1.25001 1.24039 0.85504 0.78039 0.78846 0.79303 1.18032 1.21128 1.21070 1.21360 0.98164 0.95657 0.83374 1.46002 1.52434 1.31666 1.04789 1.20855 0.80500 0.84972 0.85314 1.90719 1.38509 1.27728 1.86716 1.22519 0.99658 0.77200 0.95512 1.92946 1.95549 1.30530 1.97206 1.23776 1.00455 1.04468 0.91838 1.23889 0.82199 1.03373 0.93337 1.88926 1.46682 1.68328 1.26285 1.23815 0.90735 1.00320 0.89129 0.91226 0.92430 0.94039 0.94360 0.92390 0.91443 0.99504 0.99321 0.93176 0.93080 0.92652 0.74660 0.88409 0.86721 0.89346 0.86026 0.87242 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.05 71.99 0.58 -3.40 16 2 C -0.07 -2.40 0.54 -52.18 -0.03 -2.43 16 3 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -27.06 7.65 25.60 0.20 -26.86 16 6 H 0.07 3.60 5.68 -2.91 -0.02 3.59 16 7 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 8 N -0.94 -56.56 13.29 21.45 0.28 -56.27 16 9 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 10 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.14 4.75 4.56 86.38 0.39 5.14 16 14 N -0.70 -18.73 4.94 -463.07 -2.29 -21.02 16 15 C 0.50 13.97 6.66 87.66 0.58 14.55 16 16 O -0.56 -19.89 15.42 -3.04 -0.05 -19.94 16 17 C 0.07 1.50 1.55 -10.55 -0.02 1.49 16 18 F -0.18 -3.65 16.82 44.97 0.76 -2.89 16 19 C -0.17 -2.99 6.40 31.97 0.20 -2.78 16 20 C 0.05 0.66 7.72 72.74 0.56 1.22 16 21 O -0.38 -7.53 11.52 -148.98 -1.72 -9.25 16 22 C 0.04 0.66 7.22 72.36 0.52 1.18 16 23 H 0.07 1.66 6.86 -2.39 -0.02 1.64 16 24 H 0.06 2.00 6.62 -2.39 -0.02 1.99 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 2.05 6.62 -2.39 -0.02 2.04 16 28 H 0.07 1.71 6.86 -2.39 -0.02 1.70 16 29 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.42 8.95 6.15 -92.71 -0.57 8.38 16 35 H 0.10 2.15 6.80 -2.39 -0.02 2.13 16 36 H 0.11 1.67 8.12 -2.39 -0.02 1.65 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.11 1.42 8.03 -2.39 -0.02 1.40 16 40 H 0.10 1.82 7.68 -2.39 -0.02 1.80 16 Total: -1.00 -67.44 323.62 3.65 -63.79 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.47 Total: 13.44 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 4.16 Total: -13.06 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -2.00 Total: -77.29 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -1.76 Total: -29.18 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.76 Total: -2.89 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -67.44 3.65 -63.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325431956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.006 kcal (2) G-P(sol) polarization free energy of solvation -67.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds