Wall clock time and date at job start Mon Mar 30 2020 01:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46918 * 2 1 4 4 C 1.53002 * 109.46918 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47069 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47317 * 305.00469 * 5 4 3 7 7 F 1.39905 * 109.46699 * 65.00373 * 5 4 3 8 8 C 1.50697 * 109.46961 * 185.00027 * 5 4 3 9 9 O 1.21274 * 120.00101 * 10.00371 * 8 5 4 10 10 N 1.34778 * 120.00078 * 190.00349 * 8 5 4 11 11 C 1.47068 * 136.05373 * 359.63305 * 10 8 5 12 12 C 1.53753 * 87.88739 * 152.96320 * 11 10 8 13 13 O 1.42899 * 114.39416 * 272.67246 * 12 11 10 14 14 C 1.50707 * 114.26594 * 139.79170 * 12 11 10 15 15 H 1.08005 * 119.99751 * 266.47089 * 14 12 11 16 16 C 1.37873 * 120.00137 * 86.47628 * 14 12 11 17 17 N 1.31513 * 120.00024 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00170 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46897 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47188 * 119.99776 * 18 16 14 21 21 H 1.48490 * 109.47282 * 239.99904 * 18 16 14 22 22 C 1.47067 * 136.06396 * 180.02562 * 10 8 5 23 23 H 1.09001 * 109.46743 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47048 * 299.99789 * 1 2 3 25 25 H 1.08994 * 109.47199 * 59.99902 * 1 2 3 26 26 H 1.09000 * 109.47048 * 240.00211 * 2 1 3 27 27 H 1.08994 * 109.47199 * 120.00098 * 2 1 3 28 28 H 1.09000 * 109.47089 * 60.00236 * 3 2 1 29 29 H 1.08994 * 109.47265 * 300.00057 * 3 2 1 30 30 H 1.09000 * 109.47048 * 60.00211 * 4 3 2 31 31 H 1.08994 * 109.47199 * 300.00098 * 4 3 2 32 32 H 1.09002 * 109.47153 * 299.99641 * 6 5 4 33 33 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47261 * 59.99813 * 6 5 4 35 35 H 1.09001 * 113.46390 * 267.69375 * 11 10 8 36 36 H 1.08998 * 113.46923 * 38.13002 * 11 10 8 37 37 H 0.96698 * 114.00542 * 273.58705 * 13 12 11 38 38 H 0.97004 * 120.00499 * 180.02562 * 17 16 14 39 39 H 1.09001 * 113.46254 * 321.87106 * 22 10 8 40 40 H 1.08994 * 113.46759 * 92.30002 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 3.4703 3.6410 -1.1822 7 9 3.7094 3.5111 1.1950 8 6 5.5819 2.8867 -0.1232 9 8 6.1701 1.8587 -0.3840 10 7 6.2715 4.0307 0.0564 11 6 5.9397 5.4296 0.3660 12 6 7.3341 5.5603 1.0005 13 8 7.3937 5.1831 2.3775 14 6 8.0265 6.8671 0.7104 15 1 8.7032 6.9452 -0.1278 16 6 7.7963 7.9628 1.5150 17 7 6.9721 7.8677 2.5354 18 14 8.6552 9.5823 1.1559 19 1 9.5239 9.4276 -0.0386 20 1 7.6396 10.6341 0.8960 21 1 9.4842 9.9727 2.3243 22 6 7.6862 4.4310 0.0222 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9337 0.9286 -0.8891 31 1 3.9329 0.9289 0.8908 32 1 3.7591 3.1532 -2.1133 33 1 3.8334 4.6688 -1.1824 34 1 2.3840 3.6397 -1.0931 35 1 5.8061 6.0503 -0.5200 36 1 5.1240 5.5342 1.0814 37 1 7.1713 5.8968 2.9909 38 1 6.8098 8.6386 3.1014 39 1 8.3588 3.6844 0.4447 40 1 8.0127 4.7885 -0.9543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331019136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:06 Heat of formation + Delta-G solvation = -116.417430 kcal Electronic energy + Delta-G solvation = -22101.820259 eV Core-core repulsion = 18638.840505 eV Total energy + Delta-G solvation = -3462.979753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.55553 -39.60517 -37.74687 -36.01419 -34.03872 -32.83263 -32.19321 -29.35978 -28.18873 -25.79715 -25.11047 -24.99592 -22.29734 -20.84053 -19.74527 -18.48988 -17.52642 -16.60977 -16.11428 -15.87718 -15.28347 -15.16093 -14.82734 -14.34427 -14.11864 -13.81595 -13.40375 -13.25567 -12.96573 -12.73956 -12.51466 -12.31630 -12.19092 -12.08591 -11.87357 -11.56440 -11.35218 -11.23750 -11.12461 -11.05875 -10.94261 -10.62641 -10.51413 -10.45376 -10.25678 -9.58406 -9.17506 -8.78381 -8.39607 -7.90580 -6.40799 -4.51729 2.95159 3.12765 3.22076 3.25431 3.35054 4.16757 4.49406 4.56105 4.64630 4.80996 4.83290 4.99635 5.03499 5.09127 5.33386 5.52091 5.55469 5.61875 5.68235 5.70157 5.76589 5.85755 5.94125 5.99395 6.01669 6.08657 6.15029 6.27085 6.32657 6.39124 6.47393 6.58264 6.72854 7.09158 7.62060 7.79195 8.37289 8.51678 8.58625 9.19744 9.49890 10.65844 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035850 B = 0.004206 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.847637 B = 6655.594754 C = 6918.340731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.123 4.123 5 C 0.114 3.886 6 C -0.173 4.173 7 F -0.192 7.192 8 C 0.519 3.481 9 O -0.553 6.553 10 N -0.622 5.622 11 C 0.068 3.932 12 C 0.242 3.758 13 O -0.570 6.570 14 C -0.534 4.534 15 H 0.073 0.927 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.280 1.280 22 C 0.105 3.895 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.394 0.606 38 H 0.274 0.726 39 H 0.067 0.933 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.092 -7.033 -5.549 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.161 4.161 4 C -0.161 4.161 5 C 0.092 3.908 6 C -0.230 4.230 7 F -0.172 7.172 8 C 0.306 3.694 9 O -0.433 6.433 10 N -0.354 5.354 11 C -0.055 4.055 12 C 0.200 3.800 13 O -0.383 6.383 14 C -0.572 4.572 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.736 3.264 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.206 1.206 22 C -0.017 4.017 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.251 0.749 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.816 -8.196 -5.768 14.028 hybrid contribution 0.110 1.530 0.173 1.543 sum -9.707 -6.666 -5.595 13.037 Atomic orbital electron populations 1.21772 0.95925 1.01416 1.01822 1.21507 0.95706 0.96708 1.02196 1.21716 0.94388 0.97222 1.02745 1.21956 0.95871 0.93381 1.04938 1.21082 0.91984 0.94530 0.83188 1.22416 1.02250 1.01493 0.96849 1.92910 1.92423 1.84059 1.47820 1.20223 0.88606 0.82714 0.77854 1.90646 1.70297 1.31636 1.50677 1.49717 1.11069 1.08456 1.66119 1.24364 1.03909 0.77568 0.99625 1.19562 0.89240 0.90443 0.80803 1.86045 1.92130 1.43842 1.16296 1.21459 1.27728 0.93886 1.14155 0.90858 1.25091 0.94039 0.99655 0.94313 1.69281 1.35298 1.31981 1.17065 0.86253 0.79390 0.82118 0.78608 1.19421 1.20650 1.20601 1.23404 0.82136 0.96402 0.99752 0.92904 0.92708 0.92804 0.91952 0.91914 0.91338 0.91383 0.89326 0.90374 0.90429 0.90691 0.90116 0.90043 0.90976 0.74902 0.91581 0.91427 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.19 5.93 -26.73 -0.16 -1.35 16 3 C -0.12 -1.37 4.64 -26.73 -0.12 -1.50 16 4 C -0.12 -1.74 4.02 -26.73 -0.11 -1.85 16 5 C 0.11 1.89 1.07 -91.78 -0.10 1.79 16 6 C -0.17 -2.31 8.42 37.16 0.31 -2.00 16 7 F -0.19 -3.58 15.44 2.25 0.03 -3.55 16 8 C 0.52 10.74 7.04 -10.99 -0.08 10.66 16 9 O -0.55 -12.59 16.65 5.56 0.09 -12.50 16 10 N -0.62 -13.41 3.68 -185.07 -0.68 -14.09 16 11 C 0.07 1.49 6.85 -8.38 -0.06 1.43 16 12 C 0.24 5.86 1.58 -91.11 -0.14 5.71 16 13 O -0.57 -15.06 13.55 -35.23 -0.48 -15.54 16 14 C -0.53 -13.31 8.70 -34.44 -0.30 -13.61 16 15 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 16 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 17 N -0.90 -22.76 11.01 55.43 0.61 -22.15 16 18 Si 0.91 19.27 29.54 -169.99 -5.02 14.25 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 C 0.10 2.31 8.02 -8.51 -0.07 2.24 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.81 7.94 -51.93 -0.41 0.39 16 29 H 0.07 0.68 6.34 -51.93 -0.33 0.35 16 30 H 0.09 1.23 7.81 -51.93 -0.41 0.82 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.07 7.35 -51.93 -0.38 0.68 16 34 H 0.08 0.90 6.34 -51.93 -0.33 0.57 16 35 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 36 H 0.07 1.64 7.40 -51.93 -0.38 1.25 16 37 H 0.39 10.50 6.33 45.56 0.29 10.79 16 38 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 39 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.09 1.73 8.10 -51.93 -0.42 1.31 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -28.19 329.75 -6.74 -34.93 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -5.72 Total: 11.36 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -0.55 Total: 2.32 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.07 Total: -36.24 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.38 Total: -28.04 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.03 Total: -3.55 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.19 -6.74 -34.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331019136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.487 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds