Wall clock time and date at job start Mon Mar 30 2020 01:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46918 * 2 1 4 4 C 1.53002 * 109.46918 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47069 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47317 * 305.00469 * 5 4 3 7 7 F 1.39905 * 109.46699 * 65.00373 * 5 4 3 8 8 C 1.50697 * 109.46961 * 185.00027 * 5 4 3 9 9 O 1.21274 * 120.00101 * 10.00371 * 8 5 4 10 10 N 1.34778 * 120.00078 * 190.00349 * 8 5 4 11 11 C 1.47068 * 136.05373 * 359.63305 * 10 8 5 12 12 C 1.53753 * 87.88739 * 152.96320 * 11 10 8 13 13 O 1.42899 * 114.39416 * 272.67246 * 12 11 10 14 14 C 1.50707 * 114.26594 * 139.79170 * 12 11 10 15 15 H 1.08005 * 119.99751 * 266.47089 * 14 12 11 16 16 C 1.37873 * 120.00137 * 86.47628 * 14 12 11 17 17 N 1.31513 * 120.00024 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00170 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46897 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47188 * 119.99776 * 18 16 14 21 21 H 1.48490 * 109.47282 * 239.99904 * 18 16 14 22 22 C 1.47067 * 136.06396 * 180.02562 * 10 8 5 23 23 H 1.09001 * 109.46743 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47048 * 299.99789 * 1 2 3 25 25 H 1.08994 * 109.47199 * 59.99902 * 1 2 3 26 26 H 1.09000 * 109.47048 * 240.00211 * 2 1 3 27 27 H 1.08994 * 109.47199 * 120.00098 * 2 1 3 28 28 H 1.09000 * 109.47089 * 60.00236 * 3 2 1 29 29 H 1.08994 * 109.47265 * 300.00057 * 3 2 1 30 30 H 1.09000 * 109.47048 * 60.00211 * 4 3 2 31 31 H 1.08994 * 109.47199 * 300.00098 * 4 3 2 32 32 H 1.09002 * 109.47153 * 299.99641 * 6 5 4 33 33 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47261 * 59.99813 * 6 5 4 35 35 H 1.09001 * 113.46390 * 267.69375 * 11 10 8 36 36 H 1.08998 * 113.46923 * 38.13002 * 11 10 8 37 37 H 0.96698 * 114.00542 * 273.58705 * 13 12 11 38 38 H 0.97004 * 120.00499 * 180.02562 * 17 16 14 39 39 H 1.09001 * 113.46254 * 321.87106 * 22 10 8 40 40 H 1.08994 * 113.46759 * 92.30002 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 3.4703 3.6410 -1.1822 7 9 3.7094 3.5111 1.1950 8 6 5.5819 2.8867 -0.1232 9 8 6.1701 1.8587 -0.3840 10 7 6.2715 4.0307 0.0564 11 6 5.9397 5.4296 0.3660 12 6 7.3341 5.5603 1.0005 13 8 7.3937 5.1831 2.3775 14 6 8.0265 6.8671 0.7104 15 1 8.7032 6.9452 -0.1278 16 6 7.7963 7.9628 1.5150 17 7 6.9721 7.8677 2.5354 18 14 8.6552 9.5823 1.1559 19 1 9.5239 9.4276 -0.0386 20 1 7.6396 10.6341 0.8960 21 1 9.4842 9.9727 2.3243 22 6 7.6862 4.4310 0.0222 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9337 0.9286 -0.8891 31 1 3.9329 0.9289 0.8908 32 1 3.7591 3.1532 -2.1133 33 1 3.8334 4.6688 -1.1824 34 1 2.3840 3.6397 -1.0931 35 1 5.8061 6.0503 -0.5200 36 1 5.1240 5.5342 1.0814 37 1 7.1713 5.8968 2.9909 38 1 6.8098 8.6386 3.1014 39 1 8.3588 3.6844 0.4447 40 1 8.0127 4.7885 -0.9543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331019136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:05 Heat of formation + Delta-G solvation = -134.264257 kcal Electronic energy + Delta-G solvation = -22102.594155 eV Core-core repulsion = 18638.840505 eV Total energy + Delta-G solvation = -3463.753650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.97764 -41.33365 -39.43330 -37.06232 -35.95403 -34.14410 -33.89698 -30.83878 -29.45420 -27.45561 -26.87861 -26.22626 -23.47361 -21.97173 -21.26605 -20.14139 -19.36525 -18.24827 -17.69219 -17.15309 -17.01206 -16.42475 -16.26697 -15.96587 -15.79492 -15.12297 -14.69986 -14.56927 -14.41904 -14.06735 -13.92962 -13.74141 -13.57938 -13.43396 -13.20492 -13.11312 -12.80169 -12.78231 -12.26575 -12.23992 -12.17955 -12.15359 -11.98038 -11.61686 -11.42100 -11.32863 -10.90825 -10.64776 -10.24692 -9.68766 -8.28189 -6.46180 1.31943 1.46337 1.50712 1.61402 1.74670 2.40059 2.91828 3.09197 3.36909 3.41328 3.67618 3.70691 4.05304 4.09055 4.11890 4.27574 4.36913 4.45918 4.55555 4.57656 4.64541 4.74215 4.77378 4.77884 4.86837 4.87373 4.92081 5.05762 5.08019 5.13600 5.19663 5.30510 5.39174 5.48515 5.71752 5.88191 6.60350 6.69531 6.89359 7.27850 7.45889 8.78416 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035850 B = 0.004206 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.847637 B = 6655.594754 C = 6918.340731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.116 4.116 4 C -0.118 4.118 5 C 0.111 3.889 6 C -0.167 4.167 7 F -0.205 7.205 8 C 0.509 3.491 9 O -0.578 6.578 10 N -0.626 5.626 11 C 0.085 3.915 12 C 0.218 3.782 13 O -0.588 6.588 14 C -0.551 4.551 15 H 0.078 0.922 16 C 0.030 3.970 17 N -0.918 5.918 18 Si 0.974 3.026 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.283 1.283 22 C 0.106 3.894 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.389 0.611 38 H 0.277 0.723 39 H 0.054 0.946 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.228 -6.604 -7.026 14.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.153 4.153 4 C -0.156 4.156 5 C 0.090 3.910 6 C -0.225 4.225 7 F -0.186 7.186 8 C 0.298 3.702 9 O -0.460 6.460 10 N -0.358 5.358 11 C -0.037 4.037 12 C 0.177 3.823 13 O -0.401 6.401 14 C -0.589 4.589 15 H 0.096 0.904 16 C -0.170 4.170 17 N -0.559 5.559 18 Si 0.799 3.201 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.209 1.209 22 C -0.017 4.017 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.245 0.755 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.963 -7.778 -7.253 15.274 hybrid contribution 0.507 1.340 0.666 1.580 sum -10.457 -6.438 -6.587 13.935 Atomic orbital electron populations 1.21757 0.94653 1.02169 1.02162 1.21507 0.96781 0.95573 1.02238 1.21698 0.91835 0.98504 1.03305 1.21960 0.98043 0.91382 1.04224 1.21332 0.89182 0.96594 0.83877 1.22447 1.03756 1.00489 0.95762 1.92885 1.92240 1.84485 1.48985 1.21095 0.90444 0.81836 0.76854 1.90622 1.71378 1.32250 1.51721 1.49786 1.10808 1.08751 1.66420 1.24141 1.01925 0.77951 0.99727 1.19889 0.91091 0.91300 0.80043 1.86028 1.92401 1.44016 1.17630 1.21682 1.28215 0.94345 1.14635 0.90379 1.25825 0.94507 1.02618 0.94070 1.69348 1.36066 1.32856 1.17643 0.85253 0.78303 0.78258 0.78278 1.18848 1.20163 1.20894 1.23430 0.82551 0.95412 1.00274 0.92012 0.92887 0.91951 0.91310 0.92595 0.92016 0.89495 0.88971 0.92203 0.88837 0.91528 0.87296 0.88217 0.92259 0.75471 0.91335 0.92749 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.12 -2.14 5.93 30.60 0.18 -1.96 16 3 C -0.12 -2.35 4.64 30.60 0.14 -2.21 16 4 C -0.12 -3.21 4.02 30.59 0.12 -3.09 16 5 C 0.11 3.60 1.07 -11.54 -0.01 3.59 16 6 C -0.17 -4.09 8.42 71.98 0.61 -3.48 16 7 F -0.21 -7.61 15.44 44.97 0.69 -6.91 16 8 C 0.51 20.95 7.04 87.66 0.62 21.57 16 9 O -0.58 -26.41 16.65 -3.01 -0.05 -26.46 16 10 N -0.63 -26.90 3.68 -858.30 -3.16 -30.05 16 11 C 0.09 3.70 6.85 83.26 0.57 4.27 16 12 C 0.22 10.63 1.58 -11.11 -0.02 10.61 16 13 O -0.59 -31.79 13.55 -148.98 -2.02 -33.81 16 14 C -0.55 -27.22 8.70 25.60 0.22 -27.00 16 15 H 0.08 3.69 7.81 -2.91 -0.02 3.67 16 16 C 0.03 1.47 5.39 84.65 0.46 1.93 16 17 N -0.92 -46.69 11.01 21.45 0.24 -46.46 16 18 Si 0.97 38.88 29.54 68.60 2.03 40.91 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 20 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 21 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 22 C 0.11 4.64 8.02 83.18 0.67 5.31 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.35 7.94 -2.39 -0.02 1.33 16 29 H 0.09 1.44 6.34 -2.39 -0.02 1.42 16 30 H 0.09 2.44 7.81 -2.39 -0.02 2.42 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 1.75 7.35 -2.39 -0.02 1.74 16 34 H 0.11 2.05 6.34 -2.38 -0.02 2.03 16 35 H 0.10 3.92 8.10 -2.39 -0.02 3.90 16 36 H 0.06 2.71 7.40 -2.39 -0.02 2.69 16 37 H 0.39 21.33 6.33 -74.06 -0.47 20.86 16 38 H 0.28 13.26 8.31 -92.71 -0.77 12.49 16 39 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.11 4.29 8.10 -2.39 -0.02 4.27 16 Total: -1.00 -60.01 329.75 2.57 -57.44 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: 0.56 Total: 37.22 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 4.27 Total: 8.12 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -2.92 Total: -76.51 kcal Atomic # 8 Polarization: -58.20 SS G_CDS: -2.07 Total: -60.27 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 0.69 Total: -6.91 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -60.01 2.57 -57.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331019136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.824 kcal (2) G-P(sol) polarization free energy of solvation -60.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds