Wall clock time and date at job start Mon Mar 30 2020 01:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99413 * 2 1 4 4 C 1.50699 * 120.00452 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47208 * 94.99227 * 4 2 1 6 6 C 1.50698 * 109.46870 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00120 * 180.02562 * 6 5 4 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38871 * 120.06427 * 33.29173 * 9 8 6 11 11 C 1.38112 * 119.92493 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07478 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08000 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 180.27849 * 14 13 12 17 17 N 1.31517 * 120.00103 * 179.72615 * 16 14 13 18 18 Si 1.86804 * 120.00090 * 359.72200 * 16 14 13 19 19 H 1.48505 * 109.47086 * 90.00274 * 18 16 14 20 20 H 1.48501 * 109.47435 * 210.00523 * 18 16 14 21 21 H 1.48504 * 109.46864 * 330.00276 * 18 16 14 22 22 C 1.38286 * 120.13848 * 0.24863 * 12 11 10 23 23 C 1.38122 * 120.06639 * 359.49448 * 22 12 11 24 24 H 1.07999 * 120.00191 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.99839 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47290 * 269.99925 * 3 2 1 27 27 H 1.08993 * 109.47577 * 30.00601 * 3 2 1 28 28 H 1.09007 * 109.46813 * 150.00622 * 3 2 1 29 29 H 1.09003 * 109.46704 * 334.99709 * 4 2 1 30 30 H 1.08995 * 109.47214 * 214.99704 * 4 2 1 31 31 H 1.09003 * 109.46894 * 60.00599 * 5 4 2 32 32 H 1.08999 * 109.47633 * 299.99891 * 5 4 2 33 33 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 34 34 H 1.08002 * 120.04284 * 0.02562 * 10 9 8 35 35 H 1.08005 * 119.96508 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 37 37 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 38 38 H 0.97005 * 119.99813 * 180.02562 * 17 16 14 39 39 H 1.07996 * 119.96599 * 179.74614 * 22 12 11 40 40 H 1.08006 * 120.03084 * 180.25302 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 6 3.1804 -2.9886 -1.4383 7 8 3.4037 -3.5604 -0.3923 8 7 3.6058 -3.5208 -2.6013 9 6 4.2069 -4.7843 -2.6141 10 6 3.7981 -5.7584 -1.7128 11 6 4.3938 -7.0044 -1.7277 12 6 5.3965 -7.2823 -2.6385 13 6 6.0447 -8.6426 -2.6515 14 6 5.2888 -9.5502 -3.5874 15 1 4.4256 -9.1790 -4.1199 16 6 5.6961 -10.8561 -3.7600 17 7 5.0332 -11.6497 -4.5726 18 14 7.1895 -11.4981 -2.8396 19 1 6.7613 -12.0654 -1.5357 20 1 7.8513 -12.5551 -3.6459 21 1 8.1433 -10.3842 -2.6056 22 6 5.8098 -6.3125 -3.5335 23 6 5.2144 -5.0662 -3.5272 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 2.2451 1.6199 -1.0277 27 1 1.4744 2.0648 0.5139 28 1 3.0159 1.1749 0.5138 29 1 1.4387 -2.0856 0.4334 30 1 2.9743 -1.1990 0.5888 31 1 3.0523 -0.9027 -1.8718 32 1 1.5167 -1.7894 -2.0272 33 1 3.4953 -3.0278 -3.4293 34 1 3.0153 -5.5421 -1.0009 35 1 4.0766 -7.7624 -1.0267 36 1 6.0282 -9.0626 -1.6458 37 1 7.0768 -8.5501 -2.9897 38 1 5.3196 -12.5686 -4.6937 39 1 6.5960 -6.5312 -4.2409 40 1 5.5348 -4.3106 -4.2293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336071768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:32 Heat of formation + Delta-G solvation = -11.828582 kcal Electronic energy + Delta-G solvation = -19539.753716 eV Core-core repulsion = 16512.078500 eV Total energy + Delta-G solvation = -3027.675216 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.40215 -38.37056 -36.70368 -34.92449 -32.98750 -31.75787 -30.59252 -30.34205 -27.65235 -27.18148 -24.89240 -22.75430 -22.40864 -20.59211 -19.95116 -18.72972 -17.55468 -16.86277 -16.75827 -16.02600 -15.11862 -14.95032 -14.54311 -14.39560 -14.14107 -14.00325 -13.58962 -13.18234 -13.01039 -12.82395 -12.48189 -12.35576 -12.31170 -12.03401 -11.67977 -11.48576 -11.34379 -11.18977 -10.83887 -10.49243 -10.19909 -10.16156 -9.85846 -9.55192 -9.33105 -9.30843 -8.57486 -8.34692 -7.41770 -6.06615 -4.05552 1.78719 1.86847 2.00110 2.68563 3.11551 3.29953 3.37518 3.40683 4.35849 4.42539 4.44570 4.56441 4.68488 4.86309 4.94935 5.18679 5.23102 5.25147 5.32318 5.39378 5.51610 5.56364 5.59932 5.66353 5.84969 5.87373 5.97570 6.03939 6.11857 6.30618 6.53978 6.55766 6.72078 6.81350 6.96011 7.04802 7.07268 7.46729 7.58628 7.61425 7.72399 8.15015 8.50653 8.98710 9.53840 11.06283 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.048584 B = 0.002798 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.177448 B =10004.682805 C =10074.506079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.072 4.072 5 C -0.132 4.132 6 C 0.507 3.493 7 O -0.522 6.522 8 N -0.670 5.670 9 C 0.108 3.892 10 C -0.117 4.117 11 C -0.105 4.105 12 C -0.039 4.039 13 C 0.014 3.986 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.068 3.932 17 N -0.900 5.900 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.105 4.105 23 C -0.143 4.143 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.406 0.594 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.024 0.976 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.123 0.877 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.328 24.469 5.398 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.126 4.126 3 C -0.178 4.178 4 C -0.109 4.109 5 C -0.172 4.172 6 C 0.294 3.706 7 O -0.397 6.397 8 N -0.315 5.315 9 C 0.016 3.984 10 C -0.137 4.137 11 C -0.124 4.124 12 C -0.039 4.039 13 C -0.023 4.023 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.124 4.124 23 C -0.164 4.164 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.241 0.759 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.210 23.913 6.097 25.222 hybrid contribution 0.578 -0.245 -0.177 0.652 sum -4.632 23.668 5.920 24.833 Atomic orbital electron populations 1.23740 0.95251 1.01951 1.02291 1.21778 0.95436 0.95670 0.99745 1.20889 1.00297 0.94495 1.02113 1.20444 1.01015 0.94349 0.95127 1.21630 1.01152 0.94763 0.99674 1.20827 0.79231 0.87063 0.83441 1.90735 1.55253 1.62509 1.31217 1.43471 1.60011 1.17865 1.10179 1.17551 0.96280 0.84559 1.00037 1.20974 1.00853 0.92303 0.99554 1.20972 0.96491 0.95595 0.99313 1.20297 0.94715 0.96199 0.92704 1.18806 0.96198 0.89553 0.97742 1.20937 1.14159 0.94827 1.25048 0.90823 1.25006 0.96660 0.96685 0.94974 1.69905 1.40221 1.06742 1.37031 0.86802 0.83687 0.78936 0.80069 1.20158 1.21281 1.18917 1.20859 1.00383 0.92166 0.98986 1.20738 0.96689 0.98116 1.00812 0.88509 0.88356 0.91439 0.91895 0.91716 0.90370 0.90341 0.88746 0.88601 0.75915 0.85773 0.85996 0.95815 0.95396 0.92628 0.85915 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 13.89 29.01 0.40 -0.97 16 2 C -0.13 -0.93 5.31 -101.07 -0.54 -1.47 16 3 C -0.12 -0.72 10.03 36.01 0.36 -0.36 16 4 C -0.07 -0.63 4.67 -27.88 -0.13 -0.76 16 5 C -0.13 -1.05 5.68 -27.88 -0.16 -1.21 16 6 C 0.51 6.25 7.57 -10.98 -0.08 6.17 16 7 O -0.52 -8.60 13.67 5.55 0.08 -8.53 16 8 N -0.67 -8.10 5.34 -9.86 -0.05 -8.15 16 9 C 0.11 1.75 6.28 -83.70 -0.53 1.23 16 10 C -0.12 -2.15 8.66 -39.39 -0.34 -2.49 16 11 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 12 C -0.04 -0.83 5.07 -104.59 -0.53 -1.36 16 13 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 14 C -0.51 -14.58 9.65 -34.44 -0.33 -14.91 16 15 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 18 Si 0.88 21.51 27.46 -169.99 -4.67 16.84 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.26 -6.21 6.55 56.52 0.37 -5.84 16 22 C -0.11 -1.99 9.69 -39.61 -0.38 -2.37 16 23 C -0.14 -2.30 9.96 -39.39 -0.39 -2.69 16 24 H 0.10 0.57 8.04 -52.49 -0.42 0.15 16 25 H 0.10 0.69 7.99 -52.49 -0.42 0.27 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.33 8.06 -51.93 -0.42 -0.09 16 28 H 0.06 0.38 8.09 -51.92 -0.42 -0.04 16 29 H 0.08 0.78 7.94 -51.93 -0.41 0.36 16 30 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.41 3.38 8.82 -40.82 -0.36 3.02 16 34 H 0.12 2.25 6.42 -52.49 -0.34 1.91 16 35 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 36 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 37 H 0.03 0.66 7.15 -51.93 -0.37 0.29 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 40 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -33.22 339.93 -8.09 -41.31 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.09 Total: 1.87 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -3.25 Total: -21.59 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.72 Total: -35.02 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.08 Total: -8.53 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.22 -8.09 -41.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336071768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.481 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds