Wall clock time and date at job start Mon Mar 30 2020 01:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99413 * 2 1 4 4 C 1.50699 * 120.00452 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47208 * 94.99227 * 4 2 1 6 6 C 1.50698 * 109.46870 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00120 * 180.02562 * 6 5 4 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38871 * 120.06427 * 33.29173 * 9 8 6 11 11 C 1.38112 * 119.92493 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07478 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08000 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 180.27849 * 14 13 12 17 17 N 1.31517 * 120.00103 * 179.72615 * 16 14 13 18 18 Si 1.86804 * 120.00090 * 359.72200 * 16 14 13 19 19 H 1.48505 * 109.47086 * 90.00274 * 18 16 14 20 20 H 1.48501 * 109.47435 * 210.00523 * 18 16 14 21 21 H 1.48504 * 109.46864 * 330.00276 * 18 16 14 22 22 C 1.38286 * 120.13848 * 0.24863 * 12 11 10 23 23 C 1.38122 * 120.06639 * 359.49448 * 22 12 11 24 24 H 1.07999 * 120.00191 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.99839 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47290 * 269.99925 * 3 2 1 27 27 H 1.08993 * 109.47577 * 30.00601 * 3 2 1 28 28 H 1.09007 * 109.46813 * 150.00622 * 3 2 1 29 29 H 1.09003 * 109.46704 * 334.99709 * 4 2 1 30 30 H 1.08995 * 109.47214 * 214.99704 * 4 2 1 31 31 H 1.09003 * 109.46894 * 60.00599 * 5 4 2 32 32 H 1.08999 * 109.47633 * 299.99891 * 5 4 2 33 33 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 34 34 H 1.08002 * 120.04284 * 0.02562 * 10 9 8 35 35 H 1.08005 * 119.96508 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 37 37 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 38 38 H 0.97005 * 119.99813 * 180.02562 * 17 16 14 39 39 H 1.07996 * 119.96599 * 179.74614 * 22 12 11 40 40 H 1.08006 * 120.03084 * 180.25302 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 6 3.1804 -2.9886 -1.4383 7 8 3.4037 -3.5604 -0.3923 8 7 3.6058 -3.5208 -2.6013 9 6 4.2069 -4.7843 -2.6141 10 6 3.7981 -5.7584 -1.7128 11 6 4.3938 -7.0044 -1.7277 12 6 5.3965 -7.2823 -2.6385 13 6 6.0447 -8.6426 -2.6515 14 6 5.2888 -9.5502 -3.5874 15 1 4.4256 -9.1790 -4.1199 16 6 5.6961 -10.8561 -3.7600 17 7 5.0332 -11.6497 -4.5726 18 14 7.1895 -11.4981 -2.8396 19 1 6.7613 -12.0654 -1.5357 20 1 7.8513 -12.5551 -3.6459 21 1 8.1433 -10.3842 -2.6056 22 6 5.8098 -6.3125 -3.5335 23 6 5.2144 -5.0662 -3.5272 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 2.2451 1.6199 -1.0277 27 1 1.4744 2.0648 0.5139 28 1 3.0159 1.1749 0.5138 29 1 1.4387 -2.0856 0.4334 30 1 2.9743 -1.1990 0.5888 31 1 3.0523 -0.9027 -1.8718 32 1 1.5167 -1.7894 -2.0272 33 1 3.4953 -3.0278 -3.4293 34 1 3.0153 -5.5421 -1.0009 35 1 4.0766 -7.7624 -1.0267 36 1 6.0282 -9.0626 -1.6458 37 1 7.0768 -8.5501 -2.9897 38 1 5.3196 -12.5686 -4.6937 39 1 6.5960 -6.5312 -4.2409 40 1 5.5348 -4.3106 -4.2293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336071768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:32 Heat of formation + Delta-G solvation = -31.626421 kcal Electronic energy + Delta-G solvation = -19540.612215 eV Core-core repulsion = 16512.078500 eV Total energy + Delta-G solvation = -3028.533715 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.53258 -39.68731 -37.37262 -36.25062 -34.92833 -32.92685 -31.94138 -31.76572 -28.86136 -28.06342 -25.94273 -24.35159 -23.84152 -22.00267 -21.18132 -19.32143 -18.96750 -18.70076 -17.87450 -16.93853 -16.68034 -16.01688 -15.93537 -15.53535 -15.30363 -15.01267 -14.76391 -14.36352 -14.28200 -14.10122 -13.96328 -13.61987 -13.43042 -13.20785 -12.98218 -12.51414 -12.50734 -12.25771 -11.96919 -11.85462 -11.82854 -11.78252 -11.61659 -11.12399 -10.80788 -10.78092 -9.90766 -9.78441 -8.83985 -8.29714 -6.34548 0.41153 0.54883 1.31445 1.37016 1.37878 1.50275 1.63164 2.13232 2.35422 2.96278 3.04409 3.61887 3.98314 4.01234 4.03748 4.12375 4.26697 4.29980 4.36376 4.58213 4.61985 4.64675 4.70914 4.77471 4.89678 4.98418 5.03372 5.06469 5.11046 5.17138 5.20877 5.26257 5.39129 5.43223 5.55384 5.61981 5.77113 5.99072 6.00261 6.14853 6.28907 6.48679 6.71378 7.18419 7.28737 8.86626 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.048584 B = 0.002798 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.177448 B =10004.682805 C =10074.506079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.121 4.121 4 C -0.071 4.071 5 C -0.119 4.119 6 C 0.505 3.495 7 O -0.567 6.567 8 N -0.658 5.658 9 C 0.120 3.880 10 C -0.129 4.129 11 C -0.120 4.120 12 C -0.075 4.075 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.029 0.971 16 C 0.007 3.993 17 N -0.948 5.948 18 Si 0.950 3.050 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.245 1.245 22 C -0.113 4.113 23 C -0.132 4.132 24 H 0.110 0.890 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.428 0.572 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.025 0.975 37 H 0.035 0.965 38 H 0.267 0.733 39 H 0.131 0.869 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.525 27.360 5.195 28.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.131 4.131 3 C -0.177 4.177 4 C -0.109 4.109 5 C -0.159 4.159 6 C 0.295 3.705 7 O -0.445 6.445 8 N -0.305 5.305 9 C 0.026 3.974 10 C -0.149 4.149 11 C -0.139 4.139 12 C -0.076 4.076 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.047 0.953 16 C -0.190 4.190 17 N -0.589 5.589 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.168 1.168 22 C -0.131 4.131 23 C -0.152 4.152 24 H 0.128 0.872 25 H 0.112 0.888 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.267 0.733 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.149 0.851 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.422 26.857 5.871 27.844 hybrid contribution 0.189 -1.024 -0.127 1.048 sum -4.233 25.833 5.744 26.801 Atomic orbital electron populations 1.23863 0.95278 1.02435 1.01802 1.21782 0.95526 0.95523 1.00243 1.20914 1.00060 0.93734 1.03040 1.20391 1.00284 0.94738 0.95516 1.21654 1.01864 0.92735 0.99607 1.21672 0.78352 0.87975 0.82543 1.90729 1.56851 1.64012 1.32926 1.43441 1.59213 1.16361 1.11492 1.17673 0.95554 0.85647 0.98521 1.21009 1.01067 0.92329 1.00479 1.20970 0.96930 0.96476 0.99513 1.20176 0.96438 0.95840 0.95121 1.18646 0.96066 0.90515 0.96397 1.21155 1.13191 0.95904 1.25318 0.95300 1.25982 1.00210 0.96891 0.95931 1.70058 1.42470 1.07338 1.39028 0.85657 0.79650 0.78749 0.78625 1.19337 1.20652 1.16837 1.21052 1.00827 0.92852 0.98383 1.21074 0.95425 0.97803 1.00850 0.87223 0.88775 0.90117 0.91274 0.91917 0.92306 0.91624 0.85609 0.86383 0.73258 0.86039 0.86850 0.95722 0.94690 0.92364 0.85091 0.82281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.38 13.89 67.78 0.94 -1.44 16 2 C -0.13 -1.65 5.31 -16.49 -0.09 -1.74 16 3 C -0.12 -1.12 10.03 71.24 0.71 -0.40 16 4 C -0.07 -1.15 4.67 29.85 0.14 -1.01 16 5 C -0.12 -1.53 5.68 29.85 0.17 -1.36 16 6 C 0.50 11.39 7.57 87.66 0.66 12.05 16 7 O -0.57 -18.43 13.67 -3.04 -0.04 -18.47 16 8 N -0.66 -13.93 5.34 -303.51 -1.62 -15.55 16 9 C 0.12 3.67 6.28 38.15 0.24 3.90 16 10 C -0.13 -4.75 8.66 22.39 0.19 -4.55 16 11 C -0.12 -5.00 9.69 22.25 0.22 -4.78 16 12 C -0.08 -3.27 5.07 -19.84 -0.10 -3.37 16 13 C 0.02 1.03 4.17 29.10 0.12 1.15 16 14 C -0.52 -30.52 9.65 25.60 0.25 -30.27 16 15 H 0.03 1.90 7.98 -2.91 -0.02 1.87 16 16 C 0.01 0.40 5.47 84.65 0.46 0.87 16 17 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 18 Si 0.95 44.57 27.46 68.60 1.88 46.45 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.24 -10.63 6.55 99.48 0.65 -9.98 16 22 C -0.11 -4.14 9.69 22.25 0.22 -3.93 16 23 C -0.13 -3.87 9.96 22.39 0.22 -3.65 16 24 H 0.11 1.04 8.04 -2.91 -0.02 1.01 16 25 H 0.09 1.19 7.99 -2.91 -0.02 1.17 16 26 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.56 8.06 -2.39 -0.02 0.54 16 28 H 0.06 0.61 8.09 -2.38 -0.02 0.59 16 29 H 0.06 1.16 7.94 -2.39 -0.02 1.14 16 30 H 0.07 1.22 8.06 -2.39 -0.02 1.20 16 31 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.43 5.27 8.82 -92.71 -0.82 4.45 16 34 H 0.12 4.50 6.42 -2.91 -0.02 4.48 16 35 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 36 H 0.02 1.18 7.51 -2.39 -0.02 1.16 16 37 H 0.03 1.64 7.15 -2.39 -0.02 1.62 16 38 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 39 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -75.34 339.93 5.03 -70.32 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.15 Total: 15.48 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 4.36 Total: -38.54 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -1.32 Total: -75.24 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.04 Total: -18.47 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -75.34 5.03 -70.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336071768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.690 kcal (2) G-P(sol) polarization free energy of solvation -75.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds