Wall clock time and date at job start Mon Mar 30 2020 01:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32986 * 1 3 3 C 1.50700 * 119.99950 * 2 1 4 4 C 1.52995 * 109.47135 * 95.27881 * 3 2 1 5 5 C 1.47106 * 120.00137 * 180.27654 * 2 1 3 6 6 O 1.21610 * 119.99670 * 359.71897 * 5 2 1 7 7 N 1.34777 * 120.00070 * 179.72613 * 5 2 1 8 8 C 1.46496 * 119.99614 * 180.02562 * 7 5 2 9 9 H 1.08999 * 109.47513 * 34.99437 * 8 7 5 10 10 C 1.53005 * 109.46999 * 154.99671 * 8 7 5 11 11 C 1.50695 * 109.46978 * 294.99563 * 10 8 7 12 12 H 1.08001 * 120.00091 * 0.02562 * 11 10 8 13 13 C 1.37875 * 119.99897 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00152 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00214 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46656 * 60.00151 * 15 13 11 17 17 H 1.48501 * 109.47268 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46724 * 300.00503 * 15 13 11 19 19 C 1.50698 * 109.47133 * 274.99546 * 8 7 5 20 20 C 1.38236 * 119.99733 * 319.73012 * 19 8 7 21 21 C 1.38236 * 119.99905 * 179.78750 * 20 19 8 22 22 C 1.38235 * 120.00221 * 0.44254 * 21 20 19 23 23 C 1.38245 * 119.99811 * 359.81002 * 22 21 20 24 24 C 1.38231 * 120.00269 * 140.00231 * 19 8 7 25 25 H 1.08002 * 120.00226 * 359.72021 * 1 2 3 26 26 H 1.07998 * 120.00322 * 179.72574 * 1 2 3 27 27 H 1.09007 * 109.46900 * 215.27451 * 3 2 1 28 28 H 1.08995 * 109.47419 * 335.27569 * 3 2 1 29 29 H 1.09005 * 109.47314 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47189 * 299.99344 * 4 3 2 31 31 H 1.08997 * 109.47382 * 60.00092 * 4 3 2 32 32 H 0.96996 * 119.99887 * 359.97438 * 7 5 2 33 33 H 1.09001 * 109.47071 * 54.99707 * 10 8 7 34 34 H 1.09000 * 109.46960 * 174.99671 * 10 8 7 35 35 H 0.97001 * 120.00571 * 179.97438 * 14 13 11 36 36 H 1.08004 * 120.00443 * 359.97438 * 20 19 8 37 37 H 1.08002 * 120.00624 * 180.27464 * 21 20 19 38 38 H 1.07994 * 120.00724 * 179.83443 * 22 21 20 39 39 H 1.07994 * 119.99799 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.99949 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0834 1.3051 0.0000 4 6 2.4533 1.6804 1.4363 5 6 2.0654 -1.2739 -0.0061 6 8 1.4573 -2.3271 -0.0061 7 7 3.4132 -1.2739 -0.0117 8 6 4.1456 -2.5426 -0.0184 9 1 3.5958 -3.2765 -0.6076 10 6 5.5303 -2.3289 -0.6333 11 6 5.3824 -1.9464 -2.0833 12 1 4.3991 -1.8635 -2.5224 13 6 6.5022 -1.7011 -2.8493 14 7 7.6996 -1.8015 -2.3145 15 14 6.3190 -1.2262 -4.6467 16 1 5.5323 0.0291 -4.7491 17 1 7.6629 -1.0189 -5.2434 18 1 5.6159 -2.3120 -5.3762 19 6 4.2954 -3.0436 1.3949 20 6 4.5798 -2.1564 2.4162 21 6 4.7129 -2.6153 3.7133 22 6 4.5708 -3.9626 3.9879 23 6 4.2915 -4.8506 2.9658 24 6 4.1541 -4.3910 1.6693 25 1 -0.5400 0.9353 0.0046 26 1 -0.5400 -0.9353 -0.0045 27 1 2.9916 1.2002 -0.5935 28 1 1.4567 2.0865 -0.4298 29 1 2.9987 2.6242 1.4363 30 1 1.5451 1.7853 2.0298 31 1 3.0800 0.8991 1.8661 32 1 3.8981 -0.4339 -0.0121 33 1 6.0464 -1.5319 -0.0980 34 1 6.1075 -3.2504 -0.5576 35 1 8.4875 -1.6293 -2.8534 36 1 4.6950 -1.1043 2.2011 37 1 4.9307 -1.9216 4.5120 38 1 4.6774 -4.3215 5.0008 39 1 4.1809 -5.9032 3.1802 40 1 3.9359 -5.0847 0.8708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347053994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:09 Heat of formation + Delta-G solvation = -13.653447 kcal Electronic energy + Delta-G solvation = -21019.916931 eV Core-core repulsion = 17992.162583 eV Total energy + Delta-G solvation = -3027.754348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.73495 -38.49759 -35.37403 -35.07169 -32.70934 -30.98532 -30.43319 -30.07000 -28.78393 -25.20732 -23.65686 -22.48651 -22.23462 -21.88947 -19.82671 -18.70790 -16.89728 -16.47759 -16.16636 -15.63017 -14.89290 -14.57366 -14.41481 -14.17299 -13.84277 -13.62435 -13.32720 -13.01444 -12.76783 -12.65848 -12.47614 -12.10830 -12.07988 -11.54261 -11.24276 -11.13332 -10.91458 -10.87414 -10.71766 -10.62987 -10.43144 -9.77432 -9.41421 -9.27841 -9.23724 -8.53226 -8.45483 -8.37644 -8.16834 -6.09101 -4.12684 1.66441 1.79745 1.81798 3.28427 3.33537 3.36626 3.73372 3.81253 4.26132 4.39828 4.86610 5.02429 5.24010 5.27420 5.28460 5.29531 5.38271 5.39451 5.55414 5.64912 5.71278 5.90353 5.94610 5.95618 5.98938 6.16933 6.24621 6.36869 6.43707 6.51219 6.59049 6.63358 6.86008 6.86654 6.94134 7.13186 7.41911 7.49321 7.63287 7.87479 8.17274 8.26411 8.79997 8.93010 9.52300 11.01347 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.007528 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.876072 B = 3718.609803 C = 5295.089097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.165 4.165 3 C -0.094 4.094 4 C -0.148 4.148 5 C 0.546 3.454 6 O -0.554 6.554 7 N -0.693 5.693 8 C 0.182 3.818 9 H 0.087 0.913 10 C 0.024 3.976 11 C -0.521 4.521 12 H 0.057 0.943 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.070 4.070 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.108 4.108 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.401 0.599 33 H 0.024 0.976 34 H 0.034 0.966 35 H 0.262 0.738 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.604 4.077 9.587 13.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.168 4.168 3 C -0.131 4.131 4 C -0.206 4.206 5 C 0.333 3.667 6 O -0.434 6.434 7 N -0.342 5.342 8 C 0.078 3.922 9 H 0.105 0.895 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.072 4.072 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.141 4.141 24 C -0.127 4.127 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.237 0.763 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.792 3.345 9.531 13.391 hybrid contribution 0.306 0.665 -1.031 1.264 sum -8.485 4.010 8.500 12.662 Atomic orbital electron populations 1.24466 0.94670 1.02697 0.93780 1.21786 0.95740 0.94524 1.04743 1.20636 1.00648 0.93746 0.98075 1.21769 1.01548 1.01533 0.95712 1.18397 0.82729 0.88963 0.76570 1.90733 1.68508 1.32961 1.51176 1.45941 1.05468 1.10149 1.72658 1.20263 0.96435 0.85135 0.90354 0.89512 1.19386 0.88116 0.98349 0.95453 1.21103 0.92717 1.47212 0.94922 0.92437 1.24982 0.95273 0.95408 0.98418 1.69948 0.97550 1.49096 1.36468 0.86659 0.77111 0.79117 0.85146 1.20230 1.21289 1.20204 1.20549 0.96431 0.93638 0.96548 1.20900 0.99745 0.99503 0.92431 1.21035 1.01160 0.95616 0.96495 1.20992 1.02009 0.93666 0.98663 1.21041 1.00762 0.99195 0.93075 1.21021 0.99749 0.95332 0.96569 0.87330 0.86953 0.90263 0.90815 0.92181 0.92722 0.92339 0.76321 0.95758 0.94735 0.92803 0.86642 0.86749 0.86849 0.86609 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 13.90 28.91 0.40 -1.08 16 2 C -0.16 -2.40 5.25 -102.85 -0.54 -2.94 16 3 C -0.09 -1.11 5.55 -27.89 -0.15 -1.27 16 4 C -0.15 -1.57 9.89 37.16 0.37 -1.20 16 5 C 0.55 10.17 7.71 -12.66 -0.10 10.08 16 6 O -0.55 -12.12 15.88 5.27 0.08 -12.04 16 7 N -0.69 -12.94 3.99 -56.12 -0.22 -13.16 16 8 C 0.18 3.80 2.11 -69.08 -0.15 3.65 16 9 H 0.09 1.98 7.44 -51.93 -0.39 1.59 16 10 C 0.02 0.59 4.49 -27.88 -0.13 0.46 16 11 C -0.52 -13.88 8.84 -34.44 -0.30 -14.19 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 15 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.07 -1.34 4.91 -104.63 -0.51 -1.85 16 20 C -0.11 -1.84 9.32 -39.58 -0.37 -2.21 16 21 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 22 C -0.14 -1.95 10.05 -39.58 -0.40 -2.35 16 23 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 24 C -0.11 -1.93 9.67 -39.58 -0.38 -2.31 16 25 H 0.11 1.02 8.02 -52.49 -0.42 0.60 16 26 H 0.11 1.54 7.49 -52.49 -0.39 1.14 16 27 H 0.08 1.02 6.96 -51.92 -0.36 0.65 16 28 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.40 6.94 6.82 -40.82 -0.28 6.66 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.12 1.85 7.73 -52.48 -0.41 1.45 16 37 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.12 2.05 8.04 -52.48 -0.42 1.63 16 LS Contribution 342.70 15.07 5.16 5.16 Total: -1.00 -30.98 342.70 -8.42 -39.40 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.01 Total: 7.61 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -3.15 Total: -18.19 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.51 Total: -38.01 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.98 -8.42 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347053994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.750 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds