Wall clock time and date at job start Mon Mar 30 2020 01:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32986 * 1 3 3 C 1.50700 * 119.99950 * 2 1 4 4 C 1.52995 * 109.47135 * 95.27881 * 3 2 1 5 5 C 1.47106 * 120.00137 * 180.27654 * 2 1 3 6 6 O 1.21610 * 119.99670 * 359.71897 * 5 2 1 7 7 N 1.34777 * 120.00070 * 179.72613 * 5 2 1 8 8 C 1.46496 * 119.99614 * 180.02562 * 7 5 2 9 9 H 1.08999 * 109.47513 * 34.99437 * 8 7 5 10 10 C 1.53005 * 109.46999 * 154.99671 * 8 7 5 11 11 C 1.50695 * 109.46978 * 294.99563 * 10 8 7 12 12 H 1.08001 * 120.00091 * 0.02562 * 11 10 8 13 13 C 1.37875 * 119.99897 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00152 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00214 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46656 * 60.00151 * 15 13 11 17 17 H 1.48501 * 109.47268 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46724 * 300.00503 * 15 13 11 19 19 C 1.50698 * 109.47133 * 274.99546 * 8 7 5 20 20 C 1.38236 * 119.99733 * 319.73012 * 19 8 7 21 21 C 1.38236 * 119.99905 * 179.78750 * 20 19 8 22 22 C 1.38235 * 120.00221 * 0.44254 * 21 20 19 23 23 C 1.38245 * 119.99811 * 359.81002 * 22 21 20 24 24 C 1.38231 * 120.00269 * 140.00231 * 19 8 7 25 25 H 1.08002 * 120.00226 * 359.72021 * 1 2 3 26 26 H 1.07998 * 120.00322 * 179.72574 * 1 2 3 27 27 H 1.09007 * 109.46900 * 215.27451 * 3 2 1 28 28 H 1.08995 * 109.47419 * 335.27569 * 3 2 1 29 29 H 1.09005 * 109.47314 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47189 * 299.99344 * 4 3 2 31 31 H 1.08997 * 109.47382 * 60.00092 * 4 3 2 32 32 H 0.96996 * 119.99887 * 359.97438 * 7 5 2 33 33 H 1.09001 * 109.47071 * 54.99707 * 10 8 7 34 34 H 1.09000 * 109.46960 * 174.99671 * 10 8 7 35 35 H 0.97001 * 120.00571 * 179.97438 * 14 13 11 36 36 H 1.08004 * 120.00443 * 359.97438 * 20 19 8 37 37 H 1.08002 * 120.00624 * 180.27464 * 21 20 19 38 38 H 1.07994 * 120.00724 * 179.83443 * 22 21 20 39 39 H 1.07994 * 119.99799 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.99949 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0834 1.3051 0.0000 4 6 2.4533 1.6804 1.4363 5 6 2.0654 -1.2739 -0.0061 6 8 1.4573 -2.3271 -0.0061 7 7 3.4132 -1.2739 -0.0117 8 6 4.1456 -2.5426 -0.0184 9 1 3.5958 -3.2765 -0.6076 10 6 5.5303 -2.3289 -0.6333 11 6 5.3824 -1.9464 -2.0833 12 1 4.3991 -1.8635 -2.5224 13 6 6.5022 -1.7011 -2.8493 14 7 7.6996 -1.8015 -2.3145 15 14 6.3190 -1.2262 -4.6467 16 1 5.5323 0.0291 -4.7491 17 1 7.6629 -1.0189 -5.2434 18 1 5.6159 -2.3120 -5.3762 19 6 4.2954 -3.0436 1.3949 20 6 4.5798 -2.1564 2.4162 21 6 4.7129 -2.6153 3.7133 22 6 4.5708 -3.9626 3.9879 23 6 4.2915 -4.8506 2.9658 24 6 4.1541 -4.3910 1.6693 25 1 -0.5400 0.9353 0.0046 26 1 -0.5400 -0.9353 -0.0045 27 1 2.9916 1.2002 -0.5935 28 1 1.4567 2.0865 -0.4298 29 1 2.9987 2.6242 1.4363 30 1 1.5451 1.7853 2.0298 31 1 3.0800 0.8991 1.8661 32 1 3.8981 -0.4339 -0.0121 33 1 6.0464 -1.5319 -0.0980 34 1 6.1075 -3.2504 -0.5576 35 1 8.4875 -1.6293 -2.8534 36 1 4.6950 -1.1043 2.2011 37 1 4.9307 -1.9216 4.5120 38 1 4.6774 -4.3215 5.0008 39 1 4.1809 -5.9032 3.1802 40 1 3.9359 -5.0847 0.8708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347053994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:08 Heat of formation + Delta-G solvation = -30.723130 kcal Electronic energy + Delta-G solvation = -21020.657128 eV Core-core repulsion = 17992.162583 eV Total energy + Delta-G solvation = -3028.494545 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18872 -39.81789 -36.88633 -36.31329 -34.72418 -32.42344 -31.70616 -31.04144 -30.55782 -26.96804 -24.79965 -23.86408 -23.69633 -23.23187 -21.33712 -20.09674 -18.66054 -17.80172 -17.69425 -17.11387 -16.51277 -16.27419 -15.63043 -15.54559 -15.04769 -14.86778 -14.52274 -14.38441 -14.20274 -14.11262 -13.77073 -13.64705 -13.39791 -13.02248 -12.93302 -12.66473 -12.47616 -12.22900 -12.15706 -11.89378 -11.78503 -11.60137 -11.36944 -10.86832 -10.58655 -10.35176 -9.94793 -9.77068 -9.53786 -8.21854 -6.32680 0.48239 0.52050 0.54280 1.38705 1.40596 1.48671 2.35370 2.38833 2.39447 2.96448 3.12014 3.81869 3.90692 3.99128 4.00989 4.19290 4.29080 4.32591 4.43555 4.52410 4.63358 4.71324 4.74150 4.77648 4.82091 5.05152 5.10645 5.13598 5.18317 5.25159 5.37876 5.39904 5.46342 5.56871 5.59504 5.60958 5.62631 5.75367 5.90156 6.14117 6.18655 6.70179 6.79202 7.32652 7.36483 8.88643 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.007528 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.876072 B = 3718.609803 C = 5295.089097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.189 4.189 3 C -0.087 4.087 4 C -0.146 4.146 5 C 0.539 3.461 6 O -0.597 6.597 7 N -0.689 5.689 8 C 0.197 3.803 9 H 0.055 0.945 10 C 0.039 3.961 11 C -0.533 4.533 12 H 0.051 0.949 13 C 0.012 3.988 14 N -0.925 5.925 15 Si 0.956 3.044 16 H -0.264 1.264 17 H -0.281 1.281 18 H -0.276 1.276 19 C -0.099 4.099 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.134 4.134 25 H 0.153 0.847 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.407 0.593 33 H 0.012 0.988 34 H 0.004 0.996 35 H 0.265 0.735 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.655 5.649 10.813 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.192 4.192 3 C -0.125 4.125 4 C -0.203 4.203 5 C 0.329 3.671 6 O -0.480 6.480 7 N -0.338 5.338 8 C 0.092 3.908 9 H 0.073 0.927 10 C 0.002 3.998 11 C -0.571 4.571 12 H 0.070 0.930 13 C -0.187 4.187 14 N -0.564 5.564 15 Si 0.781 3.219 16 H -0.189 1.189 17 H -0.206 1.206 18 H -0.202 1.202 19 C -0.100 4.100 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.153 4.153 25 H 0.171 0.829 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.244 0.756 33 H 0.030 0.970 34 H 0.022 0.978 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.165 0.835 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.842 4.939 10.761 15.397 hybrid contribution 0.585 0.115 -1.343 1.469 sum -9.257 5.054 9.418 14.140 Atomic orbital electron populations 1.24783 0.93893 1.04069 0.90085 1.21762 0.96322 0.93444 1.07651 1.20637 1.00099 0.92915 0.98808 1.21766 1.01985 1.01630 0.94926 1.19158 0.82402 0.90249 0.75302 1.90699 1.69077 1.34934 1.53273 1.45840 1.05851 1.09469 1.72641 1.19750 0.93978 0.85536 0.91525 0.92654 1.19118 0.89788 0.96129 0.94781 1.21351 0.92511 1.47084 0.96144 0.93045 1.25781 0.94879 0.95275 1.02732 1.70061 0.98256 1.49981 1.38126 0.85640 0.77351 0.79091 0.79810 1.18918 1.20636 1.20163 1.20446 0.99113 0.94728 0.95746 1.21050 1.00206 0.99461 0.93203 1.21443 0.99730 0.96788 0.96163 1.21482 0.99788 0.93168 1.00165 1.21393 0.99625 1.01039 0.92006 1.21176 1.01153 0.94931 0.98034 0.82942 0.88447 0.91893 0.88072 0.90645 0.91563 0.94015 0.75645 0.96990 0.97803 0.92626 0.86353 0.83450 0.82932 0.83757 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.08 13.90 66.65 0.93 -1.15 16 2 C -0.19 -5.32 5.25 -18.70 -0.10 -5.41 16 3 C -0.09 -1.92 5.55 29.85 0.17 -1.75 16 4 C -0.15 -2.81 9.89 71.98 0.71 -2.09 16 5 C 0.54 20.76 7.71 86.57 0.67 21.43 16 6 O -0.60 -27.38 15.88 -4.06 -0.06 -27.45 16 7 N -0.69 -27.05 3.99 -449.71 -1.79 -28.84 16 8 C 0.20 8.81 2.11 44.25 0.09 8.91 16 9 H 0.06 2.77 7.44 -2.39 -0.02 2.75 16 10 C 0.04 2.03 4.49 29.85 0.13 2.16 16 11 C -0.53 -29.55 8.84 25.60 0.23 -29.33 16 12 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 13 C 0.01 0.68 5.46 84.65 0.46 1.15 16 14 N -0.92 -54.34 13.29 21.45 0.28 -54.06 16 15 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 16 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 C -0.10 -3.96 4.91 -19.87 -0.10 -4.05 16 20 C -0.12 -4.18 9.32 22.27 0.21 -3.97 16 21 C -0.12 -3.47 10.05 22.27 0.22 -3.24 16 22 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 23 C -0.12 -3.63 10.05 22.27 0.22 -3.40 16 24 C -0.13 -4.98 9.67 22.27 0.22 -4.77 16 25 H 0.15 2.17 8.02 -2.91 -0.02 2.15 16 26 H 0.10 2.57 7.49 -2.91 -0.02 2.55 16 27 H 0.06 1.58 6.96 -2.38 -0.02 1.56 16 28 H 0.10 1.67 8.01 -2.39 -0.02 1.65 16 29 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.41 14.76 6.82 -92.71 -0.63 14.13 16 33 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 36 H 0.12 3.88 7.73 -2.91 -0.02 3.86 16 37 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.11 4.14 8.04 -2.91 -0.02 4.11 16 Total: -1.00 -70.11 342.70 5.12 -64.99 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.38 Total: 28.29 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 4.29 Total: -28.66 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -1.51 Total: -82.90 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.06 Total: -27.45 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -70.11 5.12 -64.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347053994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.266 kcal (2) G-P(sol) polarization free energy of solvation -70.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds