Wall clock time and date at job start Mon Mar 30 2020 01:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99851 * 2 1 4 4 C 1.50694 * 120.00507 * 179.97438 * 2 1 3 5 5 C 1.53006 * 109.46920 * 94.99957 * 4 2 1 6 6 C 1.50708 * 109.47059 * 180.02562 * 5 4 2 7 7 O 1.21276 * 119.99619 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99619 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99681 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47362 * 179.97438 * 9 8 6 11 11 C 1.38632 * 119.74855 * 269.73233 * 10 9 8 12 12 C 1.37622 * 120.24185 * 179.71996 * 11 10 9 13 13 C 1.40711 * 119.74669 * 0.56508 * 12 11 10 14 14 C 1.41400 * 120.24519 * 179.68031 * 13 12 11 15 15 H 1.07993 * 120.00417 * 204.40825 * 14 13 12 16 16 C 1.39949 * 119.99722 * 24.41101 * 14 13 12 17 17 N 1.30829 * 120.00062 * 17.84366 * 16 14 13 18 18 Si 1.86798 * 120.00043 * 197.84420 * 16 14 13 19 19 H 1.48498 * 109.46821 * 90.00230 * 18 16 14 20 20 H 1.48501 * 109.47257 * 209.99803 * 18 16 14 21 21 H 1.48498 * 109.47318 * 330.00157 * 18 16 14 22 22 C 1.40712 * 119.51307 * 359.70755 * 13 12 11 23 23 C 1.37615 * 119.74605 * 359.97438 * 22 13 12 24 24 H 1.08002 * 119.99284 * 180.02562 * 1 2 3 25 25 H 1.07998 * 120.00143 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47193 * 270.00217 * 3 2 1 27 27 H 1.09002 * 109.46700 * 29.99919 * 3 2 1 28 28 H 1.08997 * 109.47398 * 149.99983 * 3 2 1 29 29 H 1.09005 * 109.47276 * 335.00506 * 4 2 1 30 30 H 1.08996 * 109.47522 * 215.00289 * 4 2 1 31 31 H 1.08999 * 109.46705 * 60.00644 * 5 4 2 32 32 H 1.08996 * 109.47294 * 300.00471 * 5 4 2 33 33 H 0.96996 * 120.00336 * 359.97438 * 8 6 5 34 34 H 1.09007 * 109.47068 * 59.99799 * 9 8 6 35 35 H 1.08996 * 109.47220 * 300.00144 * 9 8 6 36 36 H 1.08000 * 119.87692 * 359.96552 * 11 10 9 37 37 H 1.08002 * 120.12182 * 180.27799 * 12 11 10 38 38 H 0.96994 * 119.99970 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.12698 * 179.97438 * 22 13 12 40 40 H 1.08000 * 119.87918 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 6 2.4274 -1.6844 -1.4363 6 6 3.1806 -2.9898 -1.4358 7 8 3.4037 -3.5606 -0.3894 8 7 3.6059 -3.5227 -2.5984 9 6 4.3375 -4.7920 -2.5980 10 6 4.6961 -5.1656 -4.0132 11 6 3.8235 -5.9397 -4.7624 12 6 4.1380 -6.2820 -6.0577 13 6 5.3560 -5.8533 -6.6170 14 6 5.6929 -6.2047 -7.9445 15 1 6.7287 -6.2363 -8.2485 16 6 4.6840 -6.5114 -8.8647 17 7 3.4498 -6.1476 -8.6276 18 14 5.0994 -7.4401 -10.4312 19 1 4.9781 -8.9000 -10.1880 20 1 4.1601 -7.0381 -11.5089 21 1 6.4902 -7.1206 -10.8421 22 6 6.2365 -5.0729 -5.8452 23 6 5.8984 -4.7369 -4.5543 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 2.2451 1.6199 -1.0277 27 1 1.4743 2.0648 0.5138 28 1 3.0159 1.1749 0.5138 29 1 1.4387 -2.0853 0.4352 30 1 2.9742 -1.1985 0.5900 31 1 3.0524 -0.9042 -1.8709 32 1 1.5168 -1.7909 -2.0257 33 1 3.4271 -3.0663 -3.4353 34 1 3.7117 -5.5719 -2.1640 35 1 5.2479 -4.6864 -2.0079 36 1 2.8916 -6.2719 -4.3292 37 1 3.4548 -6.8813 -6.6411 38 1 2.7507 -6.3598 -9.2655 39 1 7.1741 -4.7388 -6.2644 40 1 6.5724 -4.1376 -3.9602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347154199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:09 Heat of formation + Delta-G solvation = -29.042777 kcal Electronic energy + Delta-G solvation = -19501.456208 eV Core-core repulsion = 16473.034529 eV Total energy + Delta-G solvation = -3028.421679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.49876 -37.73265 -36.51178 -34.69716 -33.42078 -31.46867 -30.18306 -29.37371 -27.48993 -27.00844 -24.70963 -23.17387 -21.09766 -20.14669 -19.97931 -18.54616 -17.40992 -16.82502 -15.76311 -15.63149 -15.34587 -14.80473 -14.37420 -14.17747 -13.80061 -13.70341 -13.56501 -13.07421 -12.75297 -12.54203 -12.15008 -12.05600 -11.90323 -11.83875 -11.69205 -11.19766 -11.14802 -11.06307 -10.96719 -10.72610 -10.47322 -9.81293 -9.62945 -9.49641 -9.26367 -9.14759 -8.63449 -7.59206 -7.46812 -6.88783 -4.48328 2.03566 2.56691 2.91371 2.96362 3.00353 3.03935 3.05517 3.73830 3.84237 4.50700 4.68813 4.75124 4.98898 5.13202 5.23787 5.36340 5.44366 5.57896 5.58887 5.73409 5.74731 5.83972 5.86025 5.91902 6.07669 6.22152 6.29293 6.33362 6.46864 6.71209 6.84749 6.85732 6.96086 7.16556 7.24762 7.49331 7.68641 7.93649 7.94428 8.00144 8.17547 8.51671 8.54366 8.77044 8.84748 10.05267 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030363 B = 0.002920 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.942061 B = 9585.770482 C = 9949.837896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.070 4.070 5 C -0.136 4.136 6 C 0.504 3.496 7 O -0.556 6.556 8 N -0.719 5.719 9 C 0.184 3.816 10 C -0.245 4.245 11 C -0.082 4.082 12 C -0.169 4.169 13 C 0.116 3.884 14 C -0.458 4.458 15 H 0.079 0.921 16 C 0.075 3.925 17 N -0.788 5.788 18 Si 0.910 3.090 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.230 4.230 23 C -0.070 4.070 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.401 0.599 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.282 0.718 39 H 0.093 0.907 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.232 9.188 8.537 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.124 4.124 3 C -0.178 4.178 4 C -0.107 4.107 5 C -0.176 4.176 6 C 0.291 3.709 7 O -0.435 6.435 8 N -0.369 5.369 9 C 0.062 3.938 10 C -0.247 4.247 11 C -0.101 4.101 12 C -0.188 4.188 13 C 0.113 3.887 14 C -0.487 4.487 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.413 5.413 18 Si 0.734 3.266 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.249 4.249 23 C -0.089 4.089 24 H 0.116 0.884 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.236 0.764 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.296 8.766 9.170 13.393 hybrid contribution -0.048 -0.152 -1.309 1.318 sum -4.344 8.613 7.861 12.444 Atomic orbital electron populations 1.23702 0.95255 1.01810 1.02807 1.21820 0.95464 0.95806 0.99319 1.20890 1.00219 0.94482 1.02189 1.20423 1.00712 0.94026 0.95567 1.21642 1.01314 0.95613 0.98996 1.20705 0.79455 0.86813 0.83974 1.90661 1.57930 1.63290 1.31626 1.46560 1.56857 1.24807 1.08706 1.19941 0.94783 0.83934 0.95164 1.18999 0.98603 1.11704 0.95363 1.20562 0.96914 0.97954 0.94645 1.21316 0.99616 1.04186 0.93714 1.17673 0.91016 0.87504 0.92481 1.19671 0.94349 1.40159 0.94563 0.90247 1.25954 0.94452 0.93593 1.00320 1.69818 1.01734 1.33894 1.35806 0.86282 0.79672 0.80442 0.80205 1.19162 1.20232 1.18534 1.20975 1.01845 1.06535 0.95558 1.20405 0.95142 0.98357 0.95008 0.88443 0.88613 0.91357 0.91995 0.91756 0.90629 0.90568 0.89022 0.89014 0.76442 0.92466 0.92502 0.89416 0.86360 0.90695 0.88895 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.78 13.89 29.02 0.40 -1.38 16 2 C -0.12 -1.18 5.31 -101.07 -0.54 -1.71 16 3 C -0.12 -0.96 10.03 36.01 0.36 -0.60 16 4 C -0.07 -0.77 4.67 -27.88 -0.13 -0.90 16 5 C -0.14 -1.53 5.68 -27.88 -0.16 -1.69 16 6 C 0.50 7.75 7.83 -10.98 -0.09 7.67 16 7 O -0.56 -10.49 15.98 5.56 0.09 -10.40 16 8 N -0.72 -11.37 5.55 -61.47 -0.34 -11.71 16 9 C 0.18 3.32 5.79 -5.19 -0.03 3.29 16 10 C -0.24 -5.04 5.27 -104.33 -0.55 -5.59 16 11 C -0.08 -1.81 9.67 -39.66 -0.38 -2.20 16 12 C -0.17 -4.20 8.70 -38.87 -0.34 -4.53 16 13 C 0.12 2.96 5.57 -106.83 -0.60 2.37 16 14 C -0.46 -11.70 9.05 -37.74 -0.34 -12.04 16 15 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 16 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 17 N -0.79 -19.52 10.95 55.55 0.61 -18.91 16 18 Si 0.91 17.97 29.60 -169.99 -5.03 12.94 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 C -0.23 -5.38 9.80 -38.88 -0.38 -5.76 16 23 C -0.07 -1.49 9.67 -39.66 -0.38 -1.87 16 24 H 0.10 0.86 7.99 -52.49 -0.42 0.44 16 25 H 0.10 0.74 8.04 -52.49 -0.42 0.31 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.43 8.06 -51.93 -0.42 0.01 16 28 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.08 0.91 7.94 -51.93 -0.41 0.50 16 30 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.40 5.88 8.46 -40.82 -0.35 5.53 16 34 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.06 1.03 8.08 -51.93 -0.42 0.62 16 36 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 38 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 39 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 343.21 15.07 5.17 5.17 Total: -1.00 -27.59 343.21 -8.85 -36.43 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.10 Total: 9.70 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -3.24 Total: -23.22 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: 0.27 Total: -30.62 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.59 -8.85 -36.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347154199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.388 kcal (2) G-P(sol) polarization free energy of solvation -27.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds