Wall clock time and date at job start Mon Mar 30 2020 01:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99851 * 2 1 4 4 C 1.50694 * 120.00507 * 179.97438 * 2 1 3 5 5 C 1.53006 * 109.46920 * 94.99957 * 4 2 1 6 6 C 1.50708 * 109.47059 * 180.02562 * 5 4 2 7 7 O 1.21276 * 119.99619 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99619 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99681 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47362 * 179.97438 * 9 8 6 11 11 C 1.38632 * 119.74855 * 269.73233 * 10 9 8 12 12 C 1.37622 * 120.24185 * 179.71996 * 11 10 9 13 13 C 1.40711 * 119.74669 * 0.56508 * 12 11 10 14 14 C 1.41400 * 120.24519 * 179.68031 * 13 12 11 15 15 H 1.07993 * 120.00417 * 204.40825 * 14 13 12 16 16 C 1.39949 * 119.99722 * 24.41101 * 14 13 12 17 17 N 1.30829 * 120.00062 * 17.84366 * 16 14 13 18 18 Si 1.86798 * 120.00043 * 197.84420 * 16 14 13 19 19 H 1.48498 * 109.46821 * 90.00230 * 18 16 14 20 20 H 1.48501 * 109.47257 * 209.99803 * 18 16 14 21 21 H 1.48498 * 109.47318 * 330.00157 * 18 16 14 22 22 C 1.40712 * 119.51307 * 359.70755 * 13 12 11 23 23 C 1.37615 * 119.74605 * 359.97438 * 22 13 12 24 24 H 1.08002 * 119.99284 * 180.02562 * 1 2 3 25 25 H 1.07998 * 120.00143 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47193 * 270.00217 * 3 2 1 27 27 H 1.09002 * 109.46700 * 29.99919 * 3 2 1 28 28 H 1.08997 * 109.47398 * 149.99983 * 3 2 1 29 29 H 1.09005 * 109.47276 * 335.00506 * 4 2 1 30 30 H 1.08996 * 109.47522 * 215.00289 * 4 2 1 31 31 H 1.08999 * 109.46705 * 60.00644 * 5 4 2 32 32 H 1.08996 * 109.47294 * 300.00471 * 5 4 2 33 33 H 0.96996 * 120.00336 * 359.97438 * 8 6 5 34 34 H 1.09007 * 109.47068 * 59.99799 * 9 8 6 35 35 H 1.08996 * 109.47220 * 300.00144 * 9 8 6 36 36 H 1.08000 * 119.87692 * 359.96552 * 11 10 9 37 37 H 1.08002 * 120.12182 * 180.27799 * 12 11 10 38 38 H 0.96994 * 119.99970 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.12698 * 179.97438 * 22 13 12 40 40 H 1.08000 * 119.87918 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 6 2.4274 -1.6844 -1.4363 6 6 3.1806 -2.9898 -1.4358 7 8 3.4037 -3.5606 -0.3894 8 7 3.6059 -3.5227 -2.5984 9 6 4.3375 -4.7920 -2.5980 10 6 4.6961 -5.1656 -4.0132 11 6 3.8235 -5.9397 -4.7624 12 6 4.1380 -6.2820 -6.0577 13 6 5.3560 -5.8533 -6.6170 14 6 5.6929 -6.2047 -7.9445 15 1 6.7287 -6.2363 -8.2485 16 6 4.6840 -6.5114 -8.8647 17 7 3.4498 -6.1476 -8.6276 18 14 5.0994 -7.4401 -10.4312 19 1 4.9781 -8.9000 -10.1880 20 1 4.1601 -7.0381 -11.5089 21 1 6.4902 -7.1206 -10.8421 22 6 6.2365 -5.0729 -5.8452 23 6 5.8984 -4.7369 -4.5543 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 2.2451 1.6199 -1.0277 27 1 1.4743 2.0648 0.5138 28 1 3.0159 1.1749 0.5138 29 1 1.4387 -2.0853 0.4352 30 1 2.9742 -1.1985 0.5900 31 1 3.0524 -0.9042 -1.8709 32 1 1.5168 -1.7909 -2.0257 33 1 3.4271 -3.0663 -3.4353 34 1 3.7117 -5.5719 -2.1640 35 1 5.2479 -4.6864 -2.0079 36 1 2.8916 -6.2719 -4.3292 37 1 3.4548 -6.8813 -6.6411 38 1 2.7507 -6.3598 -9.2655 39 1 7.1741 -4.7388 -6.2644 40 1 6.5724 -4.1376 -3.9602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347154199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:08 Heat of formation + Delta-G solvation = -42.826181 kcal Electronic energy + Delta-G solvation = -19502.053901 eV Core-core repulsion = 16473.034529 eV Total energy + Delta-G solvation = -3029.019373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.79586 -39.45504 -37.34665 -36.27723 -35.05396 -32.60193 -31.69260 -31.16685 -28.66969 -28.05727 -26.04894 -24.54407 -22.90805 -21.82439 -21.27954 -19.30634 -19.24530 -18.02953 -17.23289 -16.90335 -16.78812 -15.92745 -15.72873 -15.59966 -15.29251 -14.98434 -14.60624 -14.23857 -14.04242 -13.86852 -13.81419 -13.48951 -13.23320 -12.97642 -12.82911 -12.73028 -12.51866 -12.47018 -12.10182 -11.94976 -11.80544 -11.52132 -11.29862 -11.10321 -10.88166 -10.00812 -9.90314 -9.40590 -9.28680 -8.67635 -6.37558 0.83895 1.12626 1.32869 1.38662 1.48784 1.51259 1.69126 2.19354 2.40082 2.79149 3.69856 3.78737 3.99123 4.08974 4.14880 4.29161 4.34535 4.39178 4.50962 4.64926 4.67906 4.72183 4.82863 4.89636 4.99805 5.03783 5.10775 5.13997 5.16692 5.20945 5.34364 5.42021 5.51945 5.67616 5.77086 5.90399 6.01053 6.07897 6.19350 6.35187 6.65842 6.67083 6.91076 6.99774 7.29753 8.28863 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030363 B = 0.002920 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.942061 B = 9585.770482 C = 9949.837896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.121 4.121 4 C -0.067 4.067 5 C -0.126 4.126 6 C 0.505 3.495 7 O -0.592 6.592 8 N -0.716 5.716 9 C 0.192 3.808 10 C -0.227 4.227 11 C -0.083 4.083 12 C -0.192 4.192 13 C 0.085 3.915 14 C -0.497 4.497 15 H 0.076 0.924 16 C 0.036 3.964 17 N -0.819 5.819 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.243 4.243 23 C -0.068 4.068 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.409 0.591 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.289 0.711 39 H 0.098 0.902 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.578 10.450 8.792 14.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.133 4.133 3 C -0.177 4.177 4 C -0.105 4.105 5 C -0.165 4.165 6 C 0.293 3.707 7 O -0.474 6.474 8 N -0.367 5.367 9 C 0.069 3.931 10 C -0.229 4.229 11 C -0.102 4.102 12 C -0.211 4.211 13 C 0.083 3.917 14 C -0.526 4.526 15 H 0.094 0.906 16 C -0.179 4.179 17 N -0.444 5.444 18 Si 0.802 3.198 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.182 1.182 22 C -0.263 4.263 23 C -0.087 4.087 24 H 0.113 0.887 25 H 0.129 0.871 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.245 0.755 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.648 10.051 9.427 14.543 hybrid contribution 0.028 -0.495 -1.218 1.315 sum -4.620 9.556 8.209 13.418 Atomic orbital electron populations 1.23855 0.95192 1.02468 1.01831 1.21822 0.95657 0.95591 1.00208 1.20910 1.00155 0.93820 1.02835 1.20358 1.00237 0.94672 0.95192 1.21651 1.01696 0.93599 0.99591 1.21368 0.78763 0.87651 0.82919 1.90651 1.59313 1.64557 1.32843 1.46398 1.56711 1.24064 1.09483 1.19734 0.95219 0.85032 0.93141 1.19212 0.97742 1.09805 0.96128 1.20753 0.97810 0.97767 0.93868 1.21267 0.99696 1.05330 0.94833 1.18006 0.91921 0.88540 0.93235 1.19898 0.94715 1.42518 0.95427 0.90565 1.26750 0.94064 0.93792 1.03328 1.69859 1.02634 1.34666 1.37238 0.85214 0.79536 0.78854 0.76211 1.18823 1.19160 1.18224 1.21166 1.01959 1.06620 0.96536 1.20678 0.95632 0.97969 0.94384 0.88703 0.87124 0.90600 0.90973 0.91823 0.92106 0.91561 0.86796 0.87378 0.75514 0.92791 0.92195 0.87843 0.88106 0.89998 0.88345 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.09 13.89 67.78 0.94 -2.15 16 2 C -0.13 -2.24 5.31 -16.48 -0.09 -2.33 16 3 C -0.12 -1.61 10.03 71.24 0.71 -0.90 16 4 C -0.07 -1.39 4.67 29.85 0.14 -1.25 16 5 C -0.13 -2.54 5.68 29.85 0.17 -2.37 16 6 C 0.50 14.61 7.83 87.66 0.69 15.30 16 7 O -0.59 -21.75 15.98 -3.02 -0.05 -21.79 16 8 N -0.72 -21.16 5.55 -466.78 -2.59 -23.75 16 9 C 0.19 6.58 5.79 85.63 0.50 7.08 16 10 C -0.23 -9.04 5.27 -19.67 -0.10 -9.14 16 11 C -0.08 -3.66 9.67 22.22 0.21 -3.44 16 12 C -0.19 -9.73 8.70 22.73 0.20 -9.53 16 13 C 0.09 4.47 5.57 -21.29 -0.12 4.35 16 14 C -0.50 -26.06 9.05 23.46 0.21 -25.84 16 15 H 0.08 3.87 7.91 -2.91 -0.02 3.85 16 16 C 0.04 1.78 5.14 85.26 0.44 2.22 16 17 N -0.82 -41.38 10.95 21.83 0.24 -41.14 16 18 Si 0.98 37.09 29.60 68.60 2.03 39.12 16 19 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 20 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 22 C -0.24 -11.43 9.80 22.73 0.22 -11.21 16 23 C -0.07 -2.79 9.67 22.22 0.21 -2.58 16 24 H 0.09 1.52 7.99 -2.91 -0.02 1.49 16 25 H 0.11 1.40 8.04 -2.91 -0.02 1.38 16 26 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.81 8.06 -2.39 -0.02 0.79 16 28 H 0.06 0.85 8.08 -2.39 -0.02 0.83 16 29 H 0.06 1.43 7.94 -2.38 -0.02 1.41 16 30 H 0.07 1.50 8.06 -2.39 -0.02 1.48 16 31 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.41 11.00 8.46 -92.71 -0.78 10.22 16 34 H 0.05 1.91 8.08 -2.38 -0.02 1.89 16 35 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 36 H 0.10 4.15 8.06 -2.91 -0.02 4.12 16 37 H 0.10 5.40 6.16 -2.91 -0.02 5.38 16 38 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 39 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -59.97 343.21 4.20 -55.77 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 0.24 Total: 33.59 kcal Atomic # 6 Polarization: -46.13 SS G_CDS: 4.34 Total: -41.79 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -2.35 Total: -64.89 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -59.97 4.20 -55.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347154199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.942 kcal (2) G-P(sol) polarization free energy of solvation -59.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds