Wall clock time and date at job start Mon Mar 30 2020 01:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33034 * 1 3 3 C 1.50702 * 120.00344 * 2 1 4 4 C 1.53004 * 109.47214 * 94.99813 * 3 2 1 5 5 C 1.53002 * 109.46893 * 65.00352 * 4 3 2 6 6 C 1.52998 * 109.47234 * 185.00168 * 4 3 2 7 7 C 1.47043 * 119.99941 * 179.97438 * 2 1 3 8 8 O 1.21625 * 120.00063 * 359.97438 * 7 2 1 9 9 N 1.34783 * 119.99934 * 180.02562 * 7 2 1 10 10 C 1.39100 * 119.99977 * 184.11525 * 9 7 2 11 11 C 1.39512 * 119.83692 * 144.78561 * 10 9 7 12 12 C 1.36354 * 120.16710 * 180.29854 * 11 10 9 13 13 C 1.40888 * 119.83012 * 359.45837 * 12 11 10 14 14 C 1.41129 * 120.15896 * 180.25114 * 13 12 11 15 15 H 1.08001 * 119.99711 * 215.12281 * 14 13 12 16 16 C 1.39912 * 120.00424 * 35.11719 * 14 13 12 17 17 N 1.30862 * 119.99813 * 355.37647 * 16 14 13 18 18 Si 1.86799 * 120.00010 * 175.36731 * 16 14 13 19 19 H 1.48496 * 109.47161 * 60.00184 * 18 16 14 20 20 H 1.48501 * 109.47105 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47106 * 300.00271 * 18 16 14 22 22 C 1.40876 * 119.67723 * 0.54265 * 13 12 11 23 23 C 1.36360 * 119.83255 * 359.72974 * 22 13 12 24 24 H 1.08007 * 119.99964 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.00050 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47242 * 215.00349 * 3 2 1 27 27 H 1.09002 * 109.46589 * 335.00411 * 3 2 1 28 28 H 1.09004 * 109.46813 * 305.00446 * 4 3 2 29 29 H 1.09004 * 109.47282 * 299.99936 * 5 4 3 30 30 H 1.08996 * 109.46830 * 59.99687 * 5 4 3 31 31 H 1.08995 * 109.46971 * 180.02562 * 5 4 3 32 32 H 1.09005 * 109.47046 * 60.00191 * 6 4 3 33 33 H 1.08995 * 109.47046 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.47107 * 300.00691 * 6 4 3 35 35 H 0.97000 * 120.00054 * 4.11124 * 9 7 2 36 36 H 1.08004 * 119.91861 * 0.02562 * 11 10 9 37 37 H 1.08005 * 120.08535 * 179.70619 * 12 11 10 38 38 H 0.96998 * 119.99914 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.08602 * 179.71200 * 22 13 12 40 40 H 1.07999 * 119.92166 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3303 0.0000 0.0000 3 6 2.0839 1.3051 0.0000 4 6 2.4478 1.6839 1.4370 5 6 3.4250 0.6523 2.0045 6 6 3.1019 3.0670 1.4498 7 6 2.0655 -1.2734 0.0006 8 8 1.4574 -2.3267 0.0015 9 7 3.4134 -1.2734 0.0011 10 6 4.1089 -2.4750 -0.0848 11 6 5.3125 -2.5316 -0.7880 12 6 5.9968 -3.7072 -0.8817 13 6 5.4912 -4.8641 -0.2564 14 6 6.1965 -6.0834 -0.3444 15 1 5.6561 -7.0165 -0.4060 16 6 7.5956 -6.0834 -0.3520 17 7 8.2498 -4.9502 -0.3689 18 14 8.5296 -7.7010 -0.3377 19 1 8.1644 -8.4941 -1.5389 20 1 9.9896 -7.4297 -0.3483 21 1 8.1774 -8.4652 0.8859 22 6 4.2752 -4.7993 0.4519 23 6 3.5991 -3.6178 0.5323 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 2.9946 1.1988 -0.5895 27 1 1.4589 2.0854 -0.4343 28 1 1.5449 1.7033 2.0474 29 1 2.9590 -0.3330 1.9954 30 1 4.3278 0.6329 1.3941 31 1 3.6838 0.9220 3.0284 32 1 2.4058 3.8019 1.0455 33 1 3.3607 3.3370 2.4736 34 1 4.0047 3.0475 0.8394 35 1 3.8984 -0.4355 0.0613 36 1 5.7010 -1.6429 -1.2632 37 1 6.9260 -3.7506 -1.4304 38 1 9.2197 -4.9502 -0.3745 39 1 3.8792 -5.6831 0.9298 40 1 2.6666 -3.5666 1.0746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347262158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:54 Heat of formation + Delta-G solvation = -8.108786 kcal Electronic energy + Delta-G solvation = -20636.446773 eV Core-core repulsion = 17608.932859 eV Total energy + Delta-G solvation = -3027.513913 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.03775 -37.51469 -36.65274 -34.49172 -32.85987 -32.78550 -29.57734 -28.91830 -27.22316 -26.66738 -25.27976 -22.91824 -21.33015 -20.47147 -20.35317 -18.44606 -17.32004 -17.02453 -16.25879 -15.16556 -15.05921 -14.84047 -14.23169 -13.95762 -13.91545 -13.69109 -12.95428 -12.88000 -12.57387 -12.38471 -12.13837 -12.05422 -11.74353 -11.73989 -11.37059 -11.16932 -11.08841 -11.01128 -10.94112 -10.71801 -10.48680 -10.06538 -9.77021 -9.33606 -9.25842 -9.11805 -8.70898 -7.52995 -6.83806 -6.60902 -4.31975 1.51198 2.72260 3.09354 3.11333 3.12702 3.18101 3.69373 3.83065 3.99185 4.62292 4.71495 4.73137 4.81413 4.99152 5.21694 5.34657 5.48818 5.54626 5.64892 5.68288 5.69992 5.81199 5.87922 5.99592 6.16217 6.20590 6.27121 6.36466 6.45072 6.50219 6.78663 6.96782 7.08980 7.23634 7.32105 7.66139 7.77807 7.90048 8.08596 8.29562 8.33883 8.64174 8.78884 8.94374 9.02603 10.30575 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031804 B = 0.003985 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.169727 B = 7024.495739 C = 7577.824941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.168 4.168 3 C -0.083 4.083 4 C -0.093 4.093 5 C -0.161 4.161 6 C -0.148 4.148 7 C 0.535 3.465 8 O -0.536 6.536 9 N -0.646 5.646 10 C 0.004 3.996 11 C -0.121 4.121 12 C -0.140 4.140 13 C 0.101 3.899 14 C -0.463 4.463 15 H 0.075 0.925 16 C 0.071 3.929 17 N -0.814 5.814 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.205 4.205 23 C -0.085 4.085 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.397 0.603 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.278 0.722 39 H 0.096 0.904 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 13.697 1.862 15.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.171 4.171 3 C -0.121 4.121 4 C -0.111 4.111 5 C -0.218 4.218 6 C -0.205 4.205 7 C 0.323 3.677 8 O -0.415 6.415 9 N -0.291 5.291 10 C -0.088 4.088 11 C -0.142 4.142 12 C -0.160 4.160 13 C 0.098 3.902 14 C -0.493 4.493 15 H 0.093 0.907 16 C -0.144 4.144 17 N -0.441 5.441 18 Si 0.740 3.260 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.225 4.225 23 C -0.105 4.105 24 H 0.128 0.872 25 H 0.133 0.867 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.235 0.765 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.254 13.057 1.844 15.050 hybrid contribution 0.796 -0.209 0.082 0.827 sum -6.458 12.849 1.926 14.509 Atomic orbital electron populations 1.24515 0.94587 1.02894 0.93187 1.21726 0.95751 0.94262 1.05337 1.20779 1.00210 0.93865 0.97197 1.21158 0.99172 0.95273 0.95517 1.22175 0.99015 0.99625 1.00991 1.21859 1.00726 0.96009 1.01906 1.18375 0.82519 0.89073 0.77705 1.90764 1.68224 1.32592 1.49920 1.43315 1.05725 1.08946 1.71134 1.17286 0.96404 0.85933 1.09225 1.20327 0.95431 0.98045 1.00350 1.21183 1.01050 0.91897 1.01896 1.17710 0.90476 0.93577 0.88404 1.19467 0.91001 0.93921 1.44949 0.90670 1.25862 0.98169 0.97865 0.92518 1.69753 1.09216 1.26802 1.38324 0.86255 0.78033 0.81896 0.79780 1.19065 1.20450 1.19118 1.20827 0.99579 0.96462 1.05682 1.20414 0.98810 0.92441 0.98832 0.87207 0.86750 0.90954 0.90562 0.90969 0.91526 0.92377 0.92441 0.92776 0.92554 0.92453 0.76499 0.89213 0.85097 0.91144 0.88629 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 13.91 28.93 0.40 -0.90 16 2 C -0.17 -2.21 4.91 -102.86 -0.50 -2.72 16 3 C -0.08 -0.84 4.59 -27.88 -0.13 -0.96 16 4 C -0.09 -0.88 2.91 -90.62 -0.26 -1.15 16 5 C -0.16 -1.86 7.63 37.16 0.28 -1.57 16 6 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 7 C 0.53 9.67 6.33 -12.69 -0.08 9.59 16 8 O -0.54 -11.82 13.63 5.26 0.07 -11.74 16 9 N -0.65 -11.73 3.98 -10.82 -0.04 -11.77 16 10 C 0.00 0.09 6.30 -83.61 -0.53 -0.44 16 11 C -0.12 -2.81 9.90 -39.79 -0.39 -3.20 16 12 C -0.14 -3.64 8.61 -39.26 -0.34 -3.98 16 13 C 0.10 2.73 5.55 -106.80 -0.59 2.14 16 14 C -0.46 -12.48 9.02 -37.86 -0.34 -12.82 16 15 H 0.08 1.96 7.85 -52.49 -0.41 1.54 16 16 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 17 N -0.81 -21.09 10.61 55.55 0.59 -20.50 16 18 Si 0.92 19.09 29.56 -169.99 -5.03 14.07 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 C -0.21 -5.29 9.74 -39.26 -0.38 -5.67 16 23 C -0.09 -2.08 8.61 -39.78 -0.34 -2.42 16 24 H 0.11 0.89 8.02 -52.48 -0.42 0.47 16 25 H 0.11 1.46 7.49 -52.49 -0.39 1.07 16 26 H 0.07 0.73 7.03 -51.93 -0.37 0.37 16 27 H 0.08 0.62 8.01 -51.93 -0.42 0.21 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.94 5.51 -51.93 -0.29 0.66 16 30 H 0.06 0.67 6.69 -51.93 -0.35 0.32 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.40 6.01 4.47 -40.82 -0.18 5.82 16 36 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 37 H 0.13 3.50 6.15 -52.48 -0.32 3.18 16 38 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 39 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 40 H 0.11 2.59 6.21 -52.49 -0.33 2.27 16 LS Contribution 324.29 15.07 4.89 4.89 Total: -1.00 -29.80 324.29 -8.05 -37.85 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.57 Total: 10.44 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -2.96 Total: -23.22 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.55 Total: -32.28 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.07 Total: -11.74 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.80 -8.05 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347262158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.739 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds