Wall clock time and date at job start Mon Mar 30 2020 01:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33034 * 1 3 3 C 1.50702 * 120.00344 * 2 1 4 4 C 1.53004 * 109.47214 * 94.99813 * 3 2 1 5 5 C 1.53002 * 109.46893 * 65.00352 * 4 3 2 6 6 C 1.52998 * 109.47234 * 185.00168 * 4 3 2 7 7 C 1.47043 * 119.99941 * 179.97438 * 2 1 3 8 8 O 1.21625 * 120.00063 * 359.97438 * 7 2 1 9 9 N 1.34783 * 119.99934 * 180.02562 * 7 2 1 10 10 C 1.39100 * 119.99977 * 184.11525 * 9 7 2 11 11 C 1.39512 * 119.83692 * 144.78561 * 10 9 7 12 12 C 1.36354 * 120.16710 * 180.29854 * 11 10 9 13 13 C 1.40888 * 119.83012 * 359.45837 * 12 11 10 14 14 C 1.41129 * 120.15896 * 180.25114 * 13 12 11 15 15 H 1.08001 * 119.99711 * 215.12281 * 14 13 12 16 16 C 1.39912 * 120.00424 * 35.11719 * 14 13 12 17 17 N 1.30862 * 119.99813 * 355.37647 * 16 14 13 18 18 Si 1.86799 * 120.00010 * 175.36731 * 16 14 13 19 19 H 1.48496 * 109.47161 * 60.00184 * 18 16 14 20 20 H 1.48501 * 109.47105 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47106 * 300.00271 * 18 16 14 22 22 C 1.40876 * 119.67723 * 0.54265 * 13 12 11 23 23 C 1.36360 * 119.83255 * 359.72974 * 22 13 12 24 24 H 1.08007 * 119.99964 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.00050 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47242 * 215.00349 * 3 2 1 27 27 H 1.09002 * 109.46589 * 335.00411 * 3 2 1 28 28 H 1.09004 * 109.46813 * 305.00446 * 4 3 2 29 29 H 1.09004 * 109.47282 * 299.99936 * 5 4 3 30 30 H 1.08996 * 109.46830 * 59.99687 * 5 4 3 31 31 H 1.08995 * 109.46971 * 180.02562 * 5 4 3 32 32 H 1.09005 * 109.47046 * 60.00191 * 6 4 3 33 33 H 1.08995 * 109.47046 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.47107 * 300.00691 * 6 4 3 35 35 H 0.97000 * 120.00054 * 4.11124 * 9 7 2 36 36 H 1.08004 * 119.91861 * 0.02562 * 11 10 9 37 37 H 1.08005 * 120.08535 * 179.70619 * 12 11 10 38 38 H 0.96998 * 119.99914 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.08602 * 179.71200 * 22 13 12 40 40 H 1.07999 * 119.92166 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3303 0.0000 0.0000 3 6 2.0839 1.3051 0.0000 4 6 2.4478 1.6839 1.4370 5 6 3.4250 0.6523 2.0045 6 6 3.1019 3.0670 1.4498 7 6 2.0655 -1.2734 0.0006 8 8 1.4574 -2.3267 0.0015 9 7 3.4134 -1.2734 0.0011 10 6 4.1089 -2.4750 -0.0848 11 6 5.3125 -2.5316 -0.7880 12 6 5.9968 -3.7072 -0.8817 13 6 5.4912 -4.8641 -0.2564 14 6 6.1965 -6.0834 -0.3444 15 1 5.6561 -7.0165 -0.4060 16 6 7.5956 -6.0834 -0.3520 17 7 8.2498 -4.9502 -0.3689 18 14 8.5296 -7.7010 -0.3377 19 1 8.1644 -8.4941 -1.5389 20 1 9.9896 -7.4297 -0.3483 21 1 8.1774 -8.4652 0.8859 22 6 4.2752 -4.7993 0.4519 23 6 3.5991 -3.6178 0.5323 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 2.9946 1.1988 -0.5895 27 1 1.4589 2.0854 -0.4343 28 1 1.5449 1.7033 2.0474 29 1 2.9590 -0.3330 1.9954 30 1 4.3278 0.6329 1.3941 31 1 3.6838 0.9220 3.0284 32 1 2.4058 3.8019 1.0455 33 1 3.3607 3.3370 2.4736 34 1 4.0047 3.0475 0.8394 35 1 3.8984 -0.4355 0.0613 36 1 5.7010 -1.6429 -1.2632 37 1 6.9260 -3.7506 -1.4304 38 1 9.2197 -4.9502 -0.3745 39 1 3.8792 -5.6831 0.9298 40 1 2.6666 -3.5666 1.0746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347262158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:53 Heat of formation + Delta-G solvation = -23.733589 kcal Electronic energy + Delta-G solvation = -20637.124315 eV Core-core repulsion = 17608.932859 eV Total energy + Delta-G solvation = -3028.191456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51047 -39.24029 -37.73811 -36.22850 -34.65227 -33.77348 -31.51674 -30.79947 -28.06588 -27.52120 -26.99024 -24.45826 -23.15039 -22.14844 -21.37824 -19.78355 -19.23446 -18.31467 -17.81397 -17.01525 -16.37406 -16.03274 -15.67634 -15.34445 -15.05470 -14.74618 -14.60747 -14.46501 -14.04810 -13.69467 -13.66772 -13.28473 -13.08800 -12.86149 -12.82912 -12.68816 -12.61334 -12.37471 -11.95723 -11.87616 -11.82844 -11.59175 -11.48333 -11.09805 -10.80400 -10.47707 -10.26971 -9.49957 -8.73696 -8.51849 -6.33531 0.36577 0.92819 1.12408 1.39575 1.49771 1.52415 2.23851 2.31764 2.40261 2.80418 3.65037 3.77863 3.81588 4.03458 4.07172 4.35697 4.38042 4.49221 4.60291 4.75054 4.78592 4.85108 4.91042 4.96315 5.05323 5.10234 5.11862 5.14444 5.28830 5.31857 5.34737 5.39625 5.44135 5.53236 5.59389 5.68018 5.89911 6.01269 6.12587 6.36896 6.65260 6.71120 6.95299 6.98094 7.35804 8.41657 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031804 B = 0.003985 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.169727 B = 7024.495739 C = 7577.824941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.186 4.186 3 C -0.076 4.076 4 C -0.087 4.087 5 C -0.162 4.162 6 C -0.144 4.144 7 C 0.531 3.469 8 O -0.583 6.583 9 N -0.639 5.639 10 C 0.019 3.981 11 C -0.120 4.120 12 C -0.157 4.157 13 C 0.070 3.930 14 C -0.501 4.501 15 H 0.071 0.929 16 C 0.031 3.969 17 N -0.839 5.839 18 Si 0.988 3.012 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.265 1.265 22 C -0.221 4.221 23 C -0.097 4.097 24 H 0.156 0.844 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.414 0.586 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.095 0.905 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 16.129 1.674 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.189 4.189 3 C -0.114 4.114 4 C -0.106 4.106 5 C -0.220 4.220 6 C -0.202 4.202 7 C 0.322 3.678 8 O -0.465 6.465 9 N -0.286 5.286 10 C -0.075 4.075 11 C -0.140 4.140 12 C -0.177 4.177 13 C 0.067 3.933 14 C -0.532 4.532 15 H 0.089 0.911 16 C -0.181 4.181 17 N -0.467 5.467 18 Si 0.809 3.191 19 H -0.185 1.185 20 H -0.190 1.190 21 H -0.189 1.189 22 C -0.241 4.241 23 C -0.117 4.117 24 H 0.174 0.826 25 H 0.114 0.886 26 H 0.089 0.911 27 H 0.126 0.874 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.255 0.745 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.673 15.546 1.658 17.415 hybrid contribution 0.757 -0.852 0.170 1.152 sum -6.916 14.694 1.828 16.343 Atomic orbital electron populations 1.24853 0.93956 1.04220 0.89430 1.21650 0.96142 0.93043 1.08106 1.20816 1.00318 0.92695 0.97533 1.21132 0.98825 0.95396 0.95208 1.22175 0.99320 0.98862 1.01638 1.21828 1.00995 0.95091 1.02246 1.19288 0.82182 0.90534 0.75751 1.90740 1.68962 1.34911 1.51926 1.43257 1.06090 1.08060 1.71191 1.17362 0.96057 0.87060 1.07025 1.20571 0.95226 0.98336 0.99893 1.21168 1.01184 0.92794 1.02522 1.18013 0.91263 0.94509 0.89485 1.19692 0.92363 0.93805 1.47352 0.91119 1.26708 0.98338 1.01648 0.91434 1.69808 1.09887 1.28712 1.38257 0.85161 0.76993 0.77154 0.79782 1.18502 1.18991 1.18920 1.20949 0.99791 0.97175 1.06221 1.20508 0.98791 0.92940 0.99448 0.82599 0.88628 0.91143 0.87432 0.90426 0.94544 0.92650 0.91933 0.91075 0.92383 0.92477 0.74532 0.85966 0.86235 0.90365 0.88650 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 13.91 66.66 0.93 -0.78 16 2 C -0.19 -4.48 4.91 -18.72 -0.09 -4.57 16 3 C -0.08 -1.26 4.59 29.85 0.14 -1.12 16 4 C -0.09 -1.39 2.91 -10.79 -0.03 -1.42 16 5 C -0.16 -3.54 7.63 71.98 0.55 -2.99 16 6 C -0.14 -1.75 9.19 71.98 0.66 -1.09 16 7 C 0.53 18.98 6.33 86.55 0.55 19.53 16 8 O -0.58 -26.18 13.63 -4.11 -0.06 -26.24 16 9 N -0.64 -22.91 3.98 -306.40 -1.22 -24.13 16 10 C 0.02 0.85 6.30 38.61 0.24 1.10 16 11 C -0.12 -5.59 9.90 22.14 0.22 -5.37 16 12 C -0.16 -8.37 8.61 22.48 0.19 -8.18 16 13 C 0.07 3.94 5.55 -21.28 -0.12 3.83 16 14 C -0.50 -28.16 9.02 23.39 0.21 -27.95 16 15 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 16 C 0.03 1.60 5.42 85.24 0.46 2.06 16 17 N -0.84 -44.25 10.61 21.82 0.23 -44.02 16 18 Si 0.99 39.43 29.56 68.60 2.03 41.46 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 20 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 22 C -0.22 -11.96 9.74 22.48 0.22 -11.74 16 23 C -0.10 -4.90 8.61 22.14 0.19 -4.71 16 24 H 0.16 1.67 8.02 -2.91 -0.02 1.65 16 25 H 0.10 2.30 7.49 -2.91 -0.02 2.27 16 26 H 0.07 1.20 7.03 -2.39 -0.02 1.18 16 27 H 0.11 1.16 8.01 -2.39 -0.02 1.15 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 1.01 5.51 -2.38 -0.01 0.99 16 30 H 0.05 1.20 6.69 -2.39 -0.02 1.18 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.41 11.99 4.47 -92.71 -0.41 11.57 16 36 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 37 H 0.12 6.60 6.15 -2.91 -0.02 6.59 16 38 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 39 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.11 5.31 6.21 -2.91 -0.02 5.29 16 Total: -1.00 -67.87 324.29 5.93 -61.94 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.62 Total: 34.40 kcal Atomic # 6 Polarization: -47.74 SS G_CDS: 4.32 Total: -43.41 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -0.99 Total: -68.15 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.06 Total: -26.24 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -67.87 5.93 -61.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347262158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.204 kcal (2) G-P(sol) polarization free energy of solvation -67.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds