Wall clock time and date at job start Mon Mar 30 2020 01:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47396 * 2 1 4 4 C 1.30996 * 119.99960 * 124.99273 * 3 2 1 5 5 C 1.50700 * 119.99960 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.46875 * 125.00230 * 5 4 3 7 7 C 1.34784 * 119.99968 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99871 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99906 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.46813 * 180.02562 * 9 7 6 11 11 C 1.37640 * 120.13180 * 265.30632 * 10 9 7 12 12 C 1.38613 * 120.24862 * 180.32332 * 11 10 9 13 13 C 1.38655 * 120.50174 * 359.67182 * 12 11 10 14 14 C 1.37598 * 120.24576 * 359.97438 * 13 12 11 15 15 C 1.40702 * 120.12495 * 85.00356 * 10 9 7 16 16 C 1.41393 * 120.24620 * 359.97406 * 15 10 9 17 17 H 1.07999 * 119.99787 * 29.07372 * 16 15 10 18 18 C 1.39938 * 120.00244 * 209.07592 * 16 15 10 19 19 N 1.30823 * 120.00241 * 197.10039 * 18 16 15 20 20 Si 1.86803 * 119.99882 * 17.09514 * 18 16 15 21 21 H 1.48495 * 109.47432 * 270.00073 * 20 18 16 22 22 H 1.48498 * 109.46929 * 30.00589 * 20 18 16 23 23 H 1.48504 * 109.46998 * 150.00206 * 20 18 16 24 24 H 1.08995 * 109.47313 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47567 * 300.00247 * 1 2 3 26 26 H 1.09000 * 109.46834 * 60.00019 * 1 2 3 27 27 H 1.08995 * 109.47131 * 240.00058 * 2 1 3 28 28 H 1.09000 * 109.46834 * 119.99981 * 2 1 3 29 29 H 1.07997 * 119.99630 * 304.99994 * 3 2 1 30 30 H 1.07997 * 120.00410 * 0.02562 * 4 3 2 31 31 H 1.08998 * 109.47421 * 5.00986 * 5 4 3 32 32 H 1.09002 * 109.47552 * 245.00502 * 5 4 3 33 33 H 0.96998 * 120.00101 * 0.02562 * 6 5 4 34 34 H 1.08999 * 109.47299 * 60.00523 * 9 7 6 35 35 H 1.08998 * 109.47401 * 299.99992 * 9 7 6 36 36 H 1.08005 * 119.87130 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.74473 * 179.69460 * 12 11 10 38 38 H 1.08002 * 119.87493 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.12022 * 180.02562 * 14 13 12 40 40 H 0.97004 * 119.99819 * 355.45620 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8641 1.8214 0.9294 5 6 3.3670 3.2420 0.9290 6 7 3.0843 3.8604 2.2267 7 6 3.4474 5.1376 2.4581 8 8 4.0078 5.7751 1.5918 9 6 3.1571 5.7734 3.7932 10 6 3.6599 7.1941 3.7928 11 6 4.9101 7.4848 4.2898 12 6 5.3723 8.7915 4.2968 13 6 4.5858 9.8189 3.7982 14 6 3.3356 9.5505 3.2898 15 6 2.8556 8.2277 3.2785 16 6 1.5724 7.9401 2.7590 17 1 1.0096 7.1023 3.1432 18 6 1.0316 8.7411 1.7469 19 7 -0.2518 8.7013 1.4966 20 14 2.1424 9.8674 0.7534 21 1 2.2240 11.1934 1.4169 22 1 3.5003 9.2727 0.6668 23 1 1.5858 10.0315 -0.6136 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7066 2.1087 -0.7662 30 1 3.1901 1.1334 1.6954 31 1 2.8656 3.8048 0.1416 32 1 4.4423 3.2469 0.7508 33 1 2.6364 3.3504 2.9197 34 1 3.6585 5.2105 4.5804 35 1 2.0819 5.7690 3.9717 36 1 5.5313 6.6922 4.6802 37 1 6.3526 9.0111 4.6932 38 1 4.9561 10.8334 3.8083 39 1 2.7249 10.3522 2.9016 40 1 -0.8182 8.0694 1.9666 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348312797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:51 Heat of formation + Delta-G solvation = -23.654325 kcal Electronic energy + Delta-G solvation = -20295.360190 eV Core-core repulsion = 17267.172172 eV Total energy + Delta-G solvation = -3028.188019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.23786 -37.63821 -36.38180 -34.06284 -33.61391 -31.92730 -30.84736 -30.10174 -27.39364 -25.58582 -24.37735 -22.39551 -21.34289 -20.48060 -19.89810 -19.11819 -18.04099 -16.49533 -15.91616 -15.29145 -15.19960 -14.70881 -14.53514 -14.12011 -13.86797 -13.56553 -13.49978 -12.97651 -12.83430 -12.44207 -12.17372 -12.07031 -11.92277 -11.85130 -11.25479 -11.21000 -11.14713 -10.99044 -10.73618 -10.25029 -10.09983 -9.65357 -9.51874 -9.21662 -9.03177 -8.91149 -8.61290 -7.60782 -7.53534 -7.13153 -4.44721 1.95933 2.65335 2.80279 3.30003 3.39221 3.48053 3.70903 3.84204 4.14384 4.56066 4.66755 4.80210 5.06256 5.11564 5.21663 5.38090 5.47396 5.64270 5.67908 5.71761 5.77898 5.83451 5.90483 5.98247 6.07372 6.12355 6.25805 6.27741 6.49538 6.58867 6.61064 6.79905 6.86902 7.11599 7.41189 7.56691 7.72249 7.76717 7.90448 7.99822 8.06929 8.45840 8.65673 8.86399 8.91174 10.12559 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017992 B = 0.004852 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.868316 B = 5768.925286 C = 6751.548236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.140 4.140 4 C -0.174 4.174 5 C 0.150 3.850 6 N -0.742 5.742 7 C 0.517 3.483 8 O -0.518 6.518 9 C -0.071 4.071 10 C -0.171 4.171 11 C -0.069 4.069 12 C -0.246 4.246 13 C -0.076 4.076 14 C -0.245 4.245 15 C 0.115 3.885 16 C -0.513 4.513 17 H 0.074 0.926 18 C 0.047 3.953 19 N -0.824 5.824 20 Si 1.070 2.930 21 H -0.279 1.279 22 H -0.258 1.258 23 H -0.293 1.293 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.395 0.605 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.596 -14.056 0.090 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.159 4.159 4 C -0.192 4.192 5 C 0.027 3.973 6 N -0.397 5.397 7 C 0.304 3.696 8 O -0.392 6.392 9 C -0.110 4.110 10 C -0.172 4.172 11 C -0.087 4.087 12 C -0.265 4.265 13 C -0.095 4.095 14 C -0.264 4.264 15 C 0.112 3.888 16 C -0.542 4.542 17 H 0.092 0.908 18 C -0.171 4.171 19 N -0.447 5.447 20 Si 0.897 3.103 21 H -0.206 1.206 22 H -0.182 1.182 23 H -0.221 1.221 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.228 0.772 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.899 -12.459 -1.753 12.911 hybrid contribution -0.377 -1.518 1.556 2.207 sum 2.522 -13.977 -0.196 14.204 Atomic orbital electron populations 1.21717 0.94978 1.01585 1.02380 1.20660 0.96302 0.94118 1.02270 1.22991 0.96575 0.97403 0.98973 1.22935 0.99480 0.96730 1.00056 1.20228 1.00463 0.89854 0.86797 1.46089 1.63607 1.14012 1.15965 1.21027 0.77731 0.80261 0.90567 1.90681 1.40475 1.61615 1.46396 1.20264 1.02734 0.94814 0.93222 1.19031 0.95414 0.92131 1.10636 1.20426 0.94514 0.95451 0.98302 1.20327 1.00165 0.93308 1.12671 1.20603 0.94367 0.97110 0.97385 1.21126 0.98058 0.96360 1.10848 1.17508 0.92007 0.90368 0.88893 1.20522 1.00800 1.14196 1.18653 0.90768 1.27146 0.96781 0.97251 0.95935 1.70573 1.04476 1.29507 1.40169 0.83646 0.76321 0.75566 0.74759 1.20644 1.18212 1.22075 0.92619 0.92442 0.92478 0.91083 0.91606 0.86962 0.86969 0.91473 0.91248 0.77153 0.90509 0.88967 0.89194 0.89012 0.88883 0.87788 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.90 37.16 0.37 -0.81 16 2 C -0.10 -0.78 6.38 -27.88 -0.18 -0.96 16 3 C -0.14 -1.42 9.12 -36.02 -0.33 -1.75 16 4 C -0.17 -1.86 9.24 -36.02 -0.33 -2.19 16 5 C 0.15 2.12 6.11 -5.19 -0.03 2.09 16 6 N -0.74 -11.43 5.55 -61.47 -0.34 -11.77 16 7 C 0.52 10.46 7.82 -10.98 -0.09 10.38 16 8 O -0.52 -12.95 16.03 5.56 0.09 -12.86 16 9 C -0.07 -1.38 5.36 -29.03 -0.16 -1.54 16 10 C -0.17 -4.03 4.43 -103.91 -0.46 -4.49 16 11 C -0.07 -1.52 9.66 -39.66 -0.38 -1.90 16 12 C -0.25 -5.40 10.05 -39.29 -0.39 -5.80 16 13 C -0.08 -1.75 10.02 -39.66 -0.40 -2.15 16 14 C -0.25 -6.23 7.26 -38.87 -0.28 -6.51 16 15 C 0.12 3.02 5.13 -106.83 -0.55 2.48 16 16 C -0.51 -13.98 8.80 -37.75 -0.33 -14.31 16 17 H 0.07 2.02 6.60 -52.49 -0.35 1.68 16 18 C 0.05 1.30 5.42 -17.34 -0.09 1.21 16 19 N -0.82 -22.87 13.65 55.55 0.76 -22.11 16 20 Si 1.07 26.47 24.89 -169.99 -4.23 22.24 16 21 H -0.28 -6.47 6.45 56.52 0.36 -6.10 16 22 H -0.26 -6.66 7.01 56.52 0.40 -6.27 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 29 H 0.11 1.19 7.84 -52.49 -0.41 0.78 16 30 H 0.11 1.03 7.84 -52.49 -0.41 0.62 16 31 H 0.07 1.07 7.79 -51.93 -0.40 0.67 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.40 4.81 8.46 -40.82 -0.35 4.47 16 34 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 35 H 0.09 1.79 6.51 -51.93 -0.34 1.45 16 36 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.10 2.62 4.43 -52.48 -0.23 2.39 16 40 H 0.28 7.56 8.73 -40.82 -0.36 7.21 16 LS Contribution 334.34 15.07 5.04 5.04 Total: -1.00 -31.58 334.34 -8.21 -39.79 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.89 Total: 5.93 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -3.64 Total: -26.26 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.42 Total: -33.88 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -4.23 Total: 22.24 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.58 -8.21 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348312797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.139 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds