Wall clock time and date at job start Mon Mar 30 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00041 * 2 1 4 4 H 1.09002 * 109.47152 * 0.02562 * 3 2 1 5 5 C 1.50699 * 109.47227 * 240.00147 * 3 2 1 6 6 O 1.21285 * 120.00039 * 240.00021 * 5 3 2 7 7 N 1.34774 * 119.99942 * 59.99952 * 5 3 2 8 8 C 1.46500 * 119.99881 * 180.02562 * 7 5 3 9 9 C 1.53005 * 109.47094 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46982 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47097 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99742 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00221 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99615 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 119.99983 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47527 * 90.00405 * 15 13 11 17 17 H 1.48509 * 109.47133 * 210.00148 * 15 13 11 18 18 H 1.48497 * 109.47263 * 329.99964 * 15 13 11 19 19 C 1.50701 * 109.47064 * 119.99938 * 3 2 1 20 20 C 1.38236 * 119.99963 * 59.72976 * 19 3 2 21 21 C 1.38236 * 120.00036 * 179.81111 * 20 19 3 22 22 C 1.38226 * 119.99834 * 0.39071 * 21 20 19 23 23 C 1.38237 * 120.00085 * 359.86461 * 22 21 20 24 24 C 1.38229 * 120.00216 * 240.00219 * 19 3 2 25 25 H 1.07996 * 119.99903 * 359.97438 * 1 2 3 26 26 H 1.07994 * 119.99868 * 180.02562 * 1 2 3 27 27 H 1.08006 * 120.00005 * 180.02562 * 2 1 3 28 28 H 0.96998 * 120.00125 * 359.97438 * 7 5 3 29 29 H 1.09000 * 109.47175 * 300.00022 * 8 7 5 30 30 H 1.09002 * 109.47092 * 59.99980 * 8 7 5 31 31 H 1.08992 * 109.47061 * 300.00193 * 9 8 7 32 32 H 1.09002 * 109.46935 * 60.00169 * 9 8 7 33 33 H 1.09000 * 109.47312 * 300.00322 * 10 9 8 34 34 H 1.09002 * 109.47067 * 60.00348 * 10 9 8 35 35 H 0.96997 * 119.99545 * 179.97438 * 14 13 11 36 36 H 1.08010 * 119.99941 * 359.97438 * 20 19 3 37 37 H 1.08001 * 119.99466 * 180.23187 * 21 20 19 38 38 H 1.08005 * 120.00406 * 179.83264 * 22 21 20 39 39 H 1.07998 * 120.00065 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00084 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9299 1.3850 -1.2305 6 8 4.1325 1.4958 -1.1192 7 7 2.3683 1.3333 -2.4545 8 6 3.2106 1.4103 -3.6507 9 6 2.3310 1.3288 -4.9000 10 6 3.2107 1.4099 -6.1492 11 6 2.3443 1.3302 -7.3797 12 1 1.2733 1.2320 -7.2806 13 6 2.9186 1.3838 -8.6320 14 7 4.2228 1.5039 -8.7526 15 14 1.8446 1.2857 -10.1571 16 1 1.4317 2.6539 -10.5606 17 1 2.6100 0.6537 -11.2617 18 1 0.6384 0.4716 -9.8616 19 6 2.9299 1.3849 1.2305 20 6 3.9054 0.4308 1.4521 21 6 4.7027 0.5062 2.5788 22 6 4.5192 1.5311 3.4879 23 6 3.5403 2.4823 3.2690 24 6 2.7455 2.4090 2.1404 25 1 -0.5400 0.9353 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.4065 1.2443 -2.5435 29 1 3.7560 2.3541 -3.6509 30 1 3.9186 0.5816 -3.6506 31 1 1.7860 0.3849 -4.8996 32 1 1.6227 2.1573 -4.9003 33 1 3.7554 2.3540 -6.1494 34 1 3.9192 0.5816 -6.1491 35 1 4.6269 1.5412 -9.6336 36 1 4.0463 -0.3721 0.7435 37 1 5.4672 -0.2372 2.7499 38 1 5.1403 1.5886 4.3697 39 1 3.3966 3.2828 3.9796 40 1 1.9808 3.1522 1.9694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351154656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:43 Heat of formation + Delta-G solvation = -32.104927 kcal Electronic energy + Delta-G solvation = -19732.351234 eV Core-core repulsion = 16703.796769 eV Total energy + Delta-G solvation = -3028.554464 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.34373 -39.63984 -36.98455 -36.12359 -35.15817 -32.96119 -32.09245 -31.73432 -29.15964 -27.64137 -24.97471 -23.60432 -22.68090 -22.32177 -21.70888 -20.46742 -18.58870 -18.14675 -17.86150 -16.89425 -16.73228 -16.45713 -16.05856 -15.97133 -15.34648 -15.22239 -14.64929 -14.26541 -14.24587 -13.98233 -13.79175 -13.58091 -13.36955 -13.24453 -12.75190 -12.56104 -12.38708 -12.31708 -11.99729 -11.77341 -11.68029 -11.59578 -11.26952 -11.12079 -10.56184 -10.25968 -10.08374 -9.75998 -9.60939 -8.20162 -6.31873 0.41618 0.54958 1.27606 1.41473 1.42929 1.53921 1.65192 2.21459 2.42461 2.94922 3.13650 3.69965 3.75315 3.99584 4.02031 4.18608 4.19479 4.20057 4.21906 4.30307 4.53713 4.54936 4.65983 4.78586 4.92728 4.97553 5.03879 5.11134 5.15643 5.17906 5.42576 5.51772 5.57476 5.64248 5.66230 5.66938 5.69342 5.76341 5.83247 6.14141 6.21313 6.56856 6.85782 7.24059 7.37916 8.92100 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034901 B = 0.002908 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.071880 B = 9627.176603 C =10084.473989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.169 4.169 3 C -0.028 4.028 4 H 0.131 0.869 5 C 0.513 3.487 6 O -0.578 6.578 7 N -0.711 5.711 8 C 0.130 3.870 9 C -0.101 4.101 10 C 0.024 3.976 11 C -0.541 4.541 12 H 0.067 0.933 13 C -0.004 4.004 14 N -0.936 5.936 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.259 1.259 19 C -0.079 4.079 20 C -0.106 4.106 21 C -0.137 4.137 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.121 4.121 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.415 0.585 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.069 0.931 33 H -0.009 1.009 34 H -0.009 1.009 35 H 0.263 0.737 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.784 -0.859 24.896 26.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.187 4.187 3 C -0.049 4.049 4 H 0.149 0.851 5 C 0.300 3.700 6 O -0.458 6.458 7 N -0.363 5.363 8 C 0.006 3.994 9 C -0.138 4.138 10 C -0.014 4.014 11 C -0.579 4.579 12 H 0.085 0.915 13 C -0.202 4.202 14 N -0.576 5.576 15 Si 0.792 3.208 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.183 1.183 19 C -0.079 4.079 20 C -0.124 4.124 21 C -0.155 4.155 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.139 4.139 25 H 0.137 0.863 26 H 0.136 0.864 27 H 0.123 0.877 28 H 0.251 0.749 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.150 0.850 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.800 -0.773 24.833 26.041 hybrid contribution -0.051 -0.201 -1.295 1.312 sum -7.851 -0.974 23.538 24.832 Atomic orbital electron populations 1.24187 0.94602 1.03972 0.96080 1.22479 0.96423 0.95628 1.04175 1.19453 0.96288 1.00178 0.89024 0.85091 1.20998 0.88528 0.75187 0.85260 1.90707 1.17059 1.50755 1.87256 1.45934 1.11707 1.73764 1.04851 1.21223 0.93640 1.00432 0.84105 1.21588 0.98009 1.02109 0.92135 1.18943 0.94819 0.94971 0.92676 1.21682 0.94320 1.49963 0.91889 0.91451 1.26043 0.96322 0.94781 1.03039 1.70119 1.11637 1.51382 1.24508 0.85402 0.78703 0.78604 0.78061 1.19771 1.21071 1.18342 1.19422 0.97003 0.96262 0.95224 1.20995 0.95586 0.98792 0.97022 1.21369 0.99701 0.99718 0.94674 1.21472 0.98554 0.94581 0.99828 1.21444 0.95707 0.99589 0.97854 1.21310 1.00588 0.97538 0.94467 0.86329 0.86420 0.87667 0.74865 0.93360 0.93483 0.91369 0.91264 0.99054 0.99089 0.92810 0.87824 0.85036 0.83894 0.83505 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 14.32 67.78 0.97 -0.86 16 2 C -0.17 -2.92 8.17 25.65 0.21 -2.71 16 3 C -0.03 -0.59 2.67 -13.03 -0.03 -0.63 16 4 H 0.13 2.00 7.52 -2.39 -0.02 1.98 16 5 C 0.51 15.13 7.02 87.66 0.61 15.74 16 6 O -0.58 -22.45 15.13 -3.05 -0.05 -22.50 16 7 N -0.71 -19.87 5.46 -463.05 -2.53 -22.40 16 8 C 0.13 4.68 5.67 86.38 0.49 5.17 16 9 C -0.10 -3.89 5.27 30.60 0.16 -3.73 16 10 C 0.02 1.24 4.97 29.85 0.15 1.39 16 11 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 12 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 13 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 14 N -0.94 -57.52 13.29 21.45 0.28 -57.23 16 15 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 19 C -0.08 -1.83 4.38 -19.87 -0.09 -1.92 16 20 C -0.11 -2.69 8.04 22.27 0.18 -2.51 16 21 C -0.14 -2.98 10.05 22.27 0.22 -2.76 16 22 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 23 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 24 C -0.12 -2.35 9.67 22.27 0.22 -2.14 16 25 H 0.12 1.02 7.83 -2.91 -0.02 1.00 16 26 H 0.12 1.16 8.06 -2.91 -0.02 1.13 16 27 H 0.11 2.01 8.00 -2.91 -0.02 1.99 16 28 H 0.41 8.84 8.36 -92.71 -0.77 8.07 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.10 2.81 7.95 -2.91 -0.02 2.79 16 37 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.14 2.00 7.95 -2.91 -0.02 1.98 16 Total: -1.00 -72.69 344.36 4.21 -68.48 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.23 Total: 16.68 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 4.23 Total: -28.85 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -2.24 Total: -79.63 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.05 Total: -22.50 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -72.69 4.21 -68.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351154656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.377 kcal (2) G-P(sol) polarization free energy of solvation -72.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds