Wall clock time and date at job start Mon Mar 30 2020 02:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00323 * 2 1 4 4 H 1.09005 * 109.46822 * 359.97438 * 3 2 1 5 5 C 1.50696 * 109.47473 * 119.99684 * 3 2 1 6 6 O 1.21279 * 120.00203 * 120.00292 * 5 3 2 7 7 N 1.34776 * 119.99809 * 300.00124 * 5 3 2 8 8 C 1.46498 * 119.99889 * 180.02562 * 7 5 3 9 9 C 1.53000 * 109.47114 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.47221 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47304 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99795 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00204 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99660 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00179 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46935 * 60.00308 * 15 13 11 17 17 H 1.48504 * 109.47154 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46767 * 300.00579 * 15 13 11 19 19 C 1.50703 * 109.47091 * 240.00191 * 3 2 1 20 20 C 1.38235 * 120.00292 * 119.99610 * 19 3 2 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 3 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 299.96903 * 19 3 2 25 25 H 1.07994 * 119.99912 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99683 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00050 * 179.97438 * 2 1 3 28 28 H 0.96999 * 120.00297 * 0.02562 * 7 5 3 29 29 H 1.09005 * 109.46972 * 300.00056 * 8 7 5 30 30 H 1.08995 * 109.47474 * 59.99830 * 8 7 5 31 31 H 1.08995 * 109.47198 * 299.99914 * 9 8 7 32 32 H 1.09003 * 109.47122 * 60.00277 * 9 8 7 33 33 H 1.08995 * 109.47328 * 300.00280 * 10 9 8 34 34 H 1.09003 * 109.46482 * 60.00331 * 10 9 8 35 35 H 0.97003 * 119.99580 * 179.97438 * 14 13 11 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 3 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9299 1.3850 1.2304 6 8 4.1325 1.4958 1.1192 7 7 2.3683 1.3333 2.4545 8 6 3.2104 1.4115 3.6507 9 6 2.3307 1.3311 4.8999 10 6 3.2103 1.4121 6.1492 11 6 2.3438 1.3335 7.3797 12 1 1.2728 1.2351 7.2805 13 6 2.9182 1.3862 8.6319 14 7 4.2223 1.5055 8.7526 15 14 1.8441 1.2880 10.1571 16 1 1.1009 0.0024 10.1572 17 1 2.6979 1.3668 11.3697 18 1 0.8798 2.4173 10.1569 19 6 2.9299 1.3849 -1.2305 20 6 2.7455 2.4090 -2.1405 21 6 3.5406 2.4824 -3.2689 22 6 4.5207 1.5322 -3.4869 23 6 4.7060 0.5089 -2.5762 24 6 3.9094 0.4342 -1.4489 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.4065 1.2443 2.5435 29 1 3.9191 0.5833 3.6509 30 1 3.7551 2.3556 3.6505 31 1 1.6224 2.1595 4.8995 32 1 1.7858 0.3871 4.9004 33 1 3.9183 0.5835 6.1495 34 1 3.7555 2.3560 6.1490 35 1 4.6264 1.5429 9.6336 36 1 1.9802 3.1517 -1.9698 37 1 3.3963 3.2822 -3.9801 38 1 5.1390 1.5870 -4.3707 39 1 5.4715 -0.2337 -2.7467 40 1 4.0535 -0.3659 -0.7380 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351154658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:56 Heat of formation + Delta-G solvation = -12.924615 kcal Electronic energy + Delta-G solvation = -19731.926923 eV Core-core repulsion = 16704.204179 eV Total energy + Delta-G solvation = -3027.722743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 3.39 seconds Orbital eigenvalues (eV) -40.31225 -38.67235 -35.48978 -35.23020 -33.27421 -31.35804 -31.17010 -30.94997 -27.80226 -26.21894 -23.22238 -22.81064 -21.75173 -20.84741 -20.54445 -19.47750 -17.16138 -17.06368 -16.39682 -15.67242 -15.54642 -15.16251 -14.89135 -14.47601 -14.38259 -14.03289 -13.55324 -13.42459 -13.09263 -12.75319 -12.42015 -12.27059 -11.84288 -11.75849 -11.56434 -11.24287 -11.01238 -10.88480 -10.74178 -10.62986 -10.24296 -9.87010 -9.62660 -9.28483 -9.12576 -8.95092 -8.80185 -8.76070 -8.37663 -6.02321 -4.05616 1.21743 1.35313 1.96324 2.77542 3.31470 3.34705 3.36439 3.39107 3.78551 4.43591 4.54322 4.54781 4.75012 4.90823 4.91841 4.98506 5.04433 5.23961 5.33332 5.41404 5.51387 5.64686 5.71513 5.77429 5.86438 5.95779 6.15749 6.28281 6.33216 6.38063 6.42867 6.48805 6.53102 6.59298 6.83009 6.90948 6.99708 7.62541 7.70984 7.75383 7.96280 8.35954 8.40117 9.00873 9.58561 11.08964 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.002908 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.354867 B = 9625.742350 C =10083.663829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.145 4.145 3 C -0.042 4.042 4 H 0.106 0.894 5 C 0.515 3.485 6 O -0.533 6.533 7 N -0.722 5.722 8 C 0.116 3.884 9 C -0.120 4.120 10 C 0.024 3.976 11 C -0.523 4.523 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.060 4.060 20 C -0.112 4.112 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.081 4.081 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.398 0.602 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -1.322 -23.852 24.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.163 4.163 3 C -0.063 4.063 4 H 0.124 0.876 5 C 0.300 3.700 6 O -0.409 6.409 7 N -0.373 5.373 8 C -0.006 4.006 9 C -0.158 4.158 10 C -0.013 4.013 11 C -0.562 4.562 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.061 4.061 20 C -0.130 4.130 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.100 4.100 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.232 0.768 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.937 -1.223 -23.766 24.304 hybrid contribution -0.957 -0.064 1.036 1.412 sum -5.894 -1.288 -22.730 23.517 Atomic orbital electron populations 1.23930 0.95429 1.02472 0.99535 1.22623 0.95810 0.96785 1.01070 1.19511 0.96777 0.98339 0.91710 0.87634 1.20235 0.88642 0.76771 0.84356 1.90727 1.14771 1.48831 1.86573 1.46169 1.11234 1.73979 1.05905 1.21652 0.93874 1.01904 0.83182 1.21886 0.98831 1.00844 0.94278 1.19023 0.94714 0.97611 0.89990 1.21167 0.93452 1.50599 0.90942 0.92699 1.25029 0.94964 0.95259 0.99195 1.69957 1.09528 1.50113 1.23695 0.86640 0.80310 0.78605 0.82327 1.20235 1.21260 1.20238 1.19203 0.96633 0.95808 0.94418 1.20979 0.99909 0.97605 0.94523 1.21044 0.96349 0.99185 0.97688 1.21126 0.98288 0.95159 0.99381 1.21120 0.99497 0.98759 0.94674 1.20925 0.94208 0.98401 0.96417 0.88159 0.87696 0.86619 0.76795 0.91780 0.91783 0.92747 0.92730 0.96294 0.96299 0.92856 0.86215 0.86177 0.86306 0.86142 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 14.32 29.02 0.42 -0.93 16 2 C -0.14 -1.35 8.18 -36.02 -0.29 -1.65 16 3 C -0.04 -0.46 2.67 -94.08 -0.25 -0.71 16 4 H 0.11 0.96 7.52 -51.93 -0.39 0.57 16 5 C 0.52 7.60 7.01 -10.99 -0.08 7.53 16 6 O -0.53 -9.98 15.11 5.56 0.08 -9.89 16 7 N -0.72 -10.35 5.46 -60.30 -0.33 -10.68 16 8 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 9 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 10 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 11 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 12 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 C -0.06 -0.72 4.39 -104.62 -0.46 -1.18 16 20 C -0.11 -1.19 9.67 -39.59 -0.38 -1.57 16 21 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 22 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 23 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 24 C -0.08 -1.00 8.03 -39.58 -0.32 -1.32 16 25 H 0.10 0.65 7.83 -52.49 -0.41 0.24 16 26 H 0.10 0.69 8.06 -52.49 -0.42 0.26 16 27 H 0.12 1.10 8.03 -52.48 -0.42 0.68 16 28 H 0.40 4.67 8.36 -40.82 -0.34 4.33 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.12 1.02 7.95 -52.49 -0.42 0.60 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.48 7.96 -52.49 -0.42 1.06 16 LS Contribution 344.38 15.07 5.19 5.19 Total: -1.00 -32.71 344.38 -8.78 -41.49 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.17 Total: 1.74 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -3.27 Total: -18.15 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.41 Total: -36.83 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.71 -8.78 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351154658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.566 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds