Wall clock time and date at job start Mon Mar 30 2020 02:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00323 * 2 1 4 4 H 1.09005 * 109.46822 * 359.97438 * 3 2 1 5 5 C 1.50696 * 109.47473 * 119.99684 * 3 2 1 6 6 O 1.21279 * 120.00203 * 120.00292 * 5 3 2 7 7 N 1.34776 * 119.99809 * 300.00124 * 5 3 2 8 8 C 1.46498 * 119.99889 * 180.02562 * 7 5 3 9 9 C 1.53000 * 109.47114 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.47221 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47304 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99795 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00204 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99660 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00179 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46935 * 60.00308 * 15 13 11 17 17 H 1.48504 * 109.47154 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46767 * 300.00579 * 15 13 11 19 19 C 1.50703 * 109.47091 * 240.00191 * 3 2 1 20 20 C 1.38235 * 120.00292 * 119.99610 * 19 3 2 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 3 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 299.96903 * 19 3 2 25 25 H 1.07994 * 119.99912 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99683 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00050 * 179.97438 * 2 1 3 28 28 H 0.96999 * 120.00297 * 0.02562 * 7 5 3 29 29 H 1.09005 * 109.46972 * 300.00056 * 8 7 5 30 30 H 1.08995 * 109.47474 * 59.99830 * 8 7 5 31 31 H 1.08995 * 109.47198 * 299.99914 * 9 8 7 32 32 H 1.09003 * 109.47122 * 60.00277 * 9 8 7 33 33 H 1.08995 * 109.47328 * 300.00280 * 10 9 8 34 34 H 1.09003 * 109.46482 * 60.00331 * 10 9 8 35 35 H 0.97003 * 119.99580 * 179.97438 * 14 13 11 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 3 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9299 1.3850 1.2304 6 8 4.1325 1.4958 1.1192 7 7 2.3683 1.3333 2.4545 8 6 3.2104 1.4115 3.6507 9 6 2.3307 1.3311 4.8999 10 6 3.2103 1.4121 6.1492 11 6 2.3438 1.3335 7.3797 12 1 1.2728 1.2351 7.2805 13 6 2.9182 1.3862 8.6319 14 7 4.2223 1.5055 8.7526 15 14 1.8441 1.2880 10.1571 16 1 1.1009 0.0024 10.1572 17 1 2.6979 1.3668 11.3697 18 1 0.8798 2.4173 10.1569 19 6 2.9299 1.3849 -1.2305 20 6 2.7455 2.4090 -2.1405 21 6 3.5406 2.4824 -3.2689 22 6 4.5207 1.5322 -3.4869 23 6 4.7060 0.5089 -2.5762 24 6 3.9094 0.4342 -1.4489 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.4065 1.2443 2.5435 29 1 3.9191 0.5833 3.6509 30 1 3.7551 2.3556 3.6505 31 1 1.6224 2.1595 4.8995 32 1 1.7858 0.3871 4.9004 33 1 3.9183 0.5835 6.1495 34 1 3.7555 2.3560 6.1490 35 1 4.6264 1.5429 9.6336 36 1 1.9802 3.1517 -1.9698 37 1 3.3963 3.2822 -3.9801 38 1 5.1390 1.5870 -4.3707 39 1 5.4715 -0.2337 -2.7467 40 1 4.0535 -0.3659 -0.7380 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351154658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:55 Heat of formation + Delta-G solvation = -32.021706 kcal Electronic energy + Delta-G solvation = -19732.755035 eV Core-core repulsion = 16704.204179 eV Total energy + Delta-G solvation = -3028.550855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.34543 -39.63887 -36.98502 -36.12391 -35.15804 -32.96126 -32.09260 -31.73447 -29.15902 -27.64051 -24.97335 -23.60365 -22.68042 -22.32159 -21.70935 -20.46807 -18.58537 -18.14695 -17.86019 -16.89411 -16.73264 -16.46073 -16.05965 -15.97081 -15.34674 -15.22264 -14.64543 -14.26280 -14.24001 -13.98448 -13.79521 -13.58468 -13.36796 -13.24192 -12.71736 -12.56360 -12.42055 -12.31577 -11.99810 -11.77458 -11.67568 -11.59292 -11.28031 -11.12390 -10.55476 -10.26000 -10.08366 -9.75944 -9.60957 -8.19900 -6.31774 0.41580 0.54986 1.27612 1.41445 1.44662 1.52520 1.65186 2.21451 2.42610 2.94909 3.13774 3.69974 3.75319 3.99533 4.02044 4.18597 4.19541 4.20113 4.21847 4.30347 4.53680 4.54954 4.66001 4.78579 4.92729 4.97534 5.03864 5.11140 5.15632 5.17928 5.42510 5.51632 5.57482 5.64256 5.66234 5.66956 5.69376 5.76358 5.83209 6.14146 6.21359 6.56831 6.85674 7.24030 7.37996 8.92126 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.002908 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.354867 B = 9625.742350 C =10083.663829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.169 4.169 3 C -0.028 4.028 4 H 0.131 0.869 5 C 0.513 3.487 6 O -0.578 6.578 7 N -0.711 5.711 8 C 0.130 3.870 9 C -0.101 4.101 10 C 0.024 3.976 11 C -0.542 4.542 12 H 0.067 0.933 13 C -0.004 4.004 14 N -0.936 5.936 15 Si 0.968 3.032 16 H -0.265 1.265 17 H -0.286 1.286 18 H -0.265 1.265 19 C -0.079 4.079 20 C -0.121 4.121 21 C -0.128 4.128 22 C -0.126 4.126 23 C -0.137 4.137 24 C -0.105 4.105 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.415 0.585 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.068 0.932 33 H -0.009 1.009 34 H -0.009 1.009 35 H 0.263 0.737 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 -0.860 -24.881 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.187 4.187 3 C -0.049 4.049 4 H 0.149 0.851 5 C 0.300 3.700 6 O -0.458 6.458 7 N -0.363 5.363 8 C 0.006 3.994 9 C -0.138 4.138 10 C -0.014 4.014 11 C -0.580 4.580 12 H 0.086 0.914 13 C -0.201 4.201 14 N -0.576 5.576 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.079 4.079 20 C -0.139 4.139 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.155 4.155 24 C -0.124 4.124 25 H 0.137 0.863 26 H 0.136 0.864 27 H 0.123 0.877 28 H 0.251 0.749 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.072 0.928 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.161 0.839 39 H 0.150 0.850 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.791 -0.770 -24.815 26.021 hybrid contribution -0.060 -0.214 1.289 1.308 sum -7.851 -0.984 -23.526 24.821 Atomic orbital electron populations 1.24186 0.94602 1.03972 0.96083 1.22477 0.96423 0.95628 1.04173 1.19453 0.96292 1.00179 0.89022 0.85091 1.20995 0.88529 0.75188 0.85261 1.90705 1.17059 1.50751 1.87252 1.45934 1.11711 1.73763 1.04851 1.21221 0.93641 1.00430 0.84105 1.21589 0.98010 1.02108 0.92137 1.18937 0.94810 0.94960 0.92664 1.21656 0.94322 1.50113 0.91904 0.91445 1.26041 0.96322 0.94752 1.03030 1.70111 1.11649 1.51295 1.24572 0.85459 0.78401 0.79314 0.77625 1.18961 1.21197 1.18940 1.19423 0.96982 0.96282 0.95240 1.21311 1.00596 0.97506 0.94478 1.21443 0.95686 0.99607 0.97863 1.21473 0.98545 0.94592 0.99815 1.21372 0.99724 0.99708 0.94672 1.20992 0.95543 0.98823 0.97013 0.86329 0.86419 0.87672 0.74865 0.93478 0.93368 0.91262 0.91370 0.99104 0.99062 0.92801 0.84008 0.83504 0.83890 0.85040 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 14.32 67.78 0.97 -0.87 16 2 C -0.17 -2.92 8.18 25.65 0.21 -2.71 16 3 C -0.03 -0.59 2.67 -13.03 -0.03 -0.63 16 4 H 0.13 2.00 7.52 -2.38 -0.02 1.98 16 5 C 0.51 15.13 7.01 87.66 0.61 15.74 16 6 O -0.58 -22.45 15.11 -3.03 -0.05 -22.49 16 7 N -0.71 -19.88 5.46 -463.07 -2.53 -22.40 16 8 C 0.13 4.69 5.67 86.38 0.49 5.18 16 9 C -0.10 -3.89 5.27 30.60 0.16 -3.73 16 10 C 0.02 1.26 4.97 29.85 0.15 1.41 16 11 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 12 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 13 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 14 N -0.94 -57.54 13.29 21.45 0.28 -57.25 16 15 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 16 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 17 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 19 C -0.08 -1.84 4.39 -19.87 -0.09 -1.92 16 20 C -0.12 -2.35 9.67 22.27 0.22 -2.13 16 21 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 22 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 23 C -0.14 -2.99 10.05 22.27 0.22 -2.77 16 24 C -0.11 -2.68 8.03 22.27 0.18 -2.51 16 25 H 0.12 1.02 7.83 -2.91 -0.02 1.00 16 26 H 0.12 1.16 8.06 -2.91 -0.02 1.13 16 27 H 0.11 2.01 8.03 -2.91 -0.02 1.99 16 28 H 0.41 8.85 8.36 -92.71 -0.77 8.07 16 29 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.14 2.00 7.95 -2.91 -0.02 1.98 16 37 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.10 2.82 7.96 -2.91 -0.02 2.79 16 Total: -1.00 -72.66 344.38 4.21 -68.45 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.23 Total: 16.81 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 4.23 Total: -28.90 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -2.24 Total: -79.66 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.05 Total: -22.49 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -72.66 4.21 -68.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351154658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.432 kcal (2) G-P(sol) polarization free energy of solvation -72.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds