Wall clock time and date at job start Mon Mar 30 2020 02:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47345 * 2 1 4 4 H 1.09005 * 115.56305 * 29.30908 * 3 2 1 5 5 C 1.53072 * 117.49330 * 243.60064 * 3 2 1 6 6 C 1.52998 * 117.50245 * 174.99734 * 3 2 1 7 7 H 1.09008 * 117.49566 * 359.97438 * 6 3 2 8 8 N 1.46500 * 117.50346 * 214.97887 * 6 3 2 9 9 C 1.34774 * 120.00205 * 155.08577 * 8 6 3 10 10 O 1.21279 * 119.99598 * 359.97438 * 9 8 6 11 11 C 1.50699 * 119.99899 * 180.02562 * 9 8 6 12 12 H 1.09000 * 109.47097 * 323.03767 * 11 9 8 13 13 C 1.50693 * 109.47374 * 83.03894 * 11 9 8 14 14 H 1.08008 * 120.00026 * 55.84966 * 13 11 9 15 15 C 1.37878 * 120.00644 * 235.84676 * 13 11 9 16 16 N 1.31512 * 120.00592 * 175.60394 * 15 13 11 17 17 Si 1.86809 * 119.99349 * 355.60685 * 15 13 11 18 18 H 1.48498 * 109.47082 * 83.70652 * 17 15 13 19 19 H 1.48501 * 109.46740 * 203.70545 * 17 15 13 20 20 H 1.48498 * 109.47091 * 323.70306 * 17 15 13 21 21 C 1.50695 * 109.46942 * 203.04310 * 11 9 8 22 22 C 1.38233 * 119.99990 * 292.29708 * 21 11 9 23 23 C 1.38243 * 120.00221 * 179.76859 * 22 21 11 24 24 C 1.38232 * 119.99623 * 0.50714 * 23 22 21 25 25 C 1.38233 * 120.00338 * 359.74469 * 24 23 22 26 26 C 1.38233 * 120.00403 * 112.57315 * 21 11 9 27 27 H 1.09003 * 109.46971 * 60.00213 * 1 2 3 28 28 H 1.09002 * 109.47101 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47561 * 300.00024 * 1 2 3 30 30 H 1.09001 * 109.47343 * 239.99471 * 2 1 3 31 31 H 1.09003 * 109.46971 * 119.99787 * 2 1 3 32 32 H 1.09004 * 117.51000 * 145.03447 * 5 3 2 33 33 H 1.08993 * 117.51319 * 359.97438 * 5 3 2 34 34 H 0.97001 * 119.99607 * 335.08731 * 8 6 3 35 35 H 0.96996 * 119.99780 * 180.02562 * 16 15 13 36 36 H 1.08005 * 120.00162 * 359.97438 * 22 21 11 37 37 H 1.08000 * 119.99906 * 180.23655 * 23 22 21 38 38 H 1.08000 * 119.99622 * 179.72803 * 24 23 22 39 39 H 1.07995 * 120.00609 * 179.97438 * 25 24 23 40 40 H 1.08005 * 119.99927 * 0.02562 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8448 1.9074 -1.2162 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7718 0.1966 8 7 4.0097 2.8284 0.8699 9 6 5.2319 2.8273 1.4379 10 8 5.9511 1.8571 1.3272 11 6 5.7044 4.0313 2.2114 12 1 5.3475 4.9389 1.7246 13 6 5.1638 3.9693 3.6167 14 1 5.3579 3.1033 4.2323 15 6 4.4215 5.0180 4.1168 16 7 3.8771 4.9281 5.3106 17 14 4.1890 6.5668 3.0985 18 1 3.0624 6.3718 2.1510 19 1 3.8875 7.7096 3.9976 20 1 5.4324 6.8502 2.3376 21 6 7.2107 4.0424 2.2526 22 6 7.8899 3.0711 2.9641 23 6 9.2719 3.0784 2.9979 24 6 9.9743 4.0633 2.3290 25 6 9.2951 5.0376 1.6218 26 6 7.9132 5.0272 1.5837 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.7226 2.9426 -1.5350 33 1 3.0111 1.1856 -2.0158 34 1 3.4343 3.6042 0.9587 35 1 3.3546 5.6658 5.6621 36 1 7.3409 2.3044 3.4907 37 1 9.8025 2.3173 3.5506 38 1 11.0539 4.0716 2.3591 39 1 9.8438 5.8073 1.0996 40 1 7.3825 5.7890 1.0319 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524741275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:10 Heat of formation + Delta-G solvation = -4.697002 kcal Electronic energy + Delta-G solvation = -20667.758119 eV Core-core repulsion = 17640.392152 eV Total energy + Delta-G solvation = -3027.365967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.45474 -38.30462 -37.10065 -33.63027 -33.15042 -31.58809 -30.96233 -30.13246 -27.76665 -24.00085 -23.68099 -22.12858 -21.83144 -20.60545 -20.48551 -19.28647 -17.16730 -16.37396 -16.23166 -15.80080 -14.72313 -14.54032 -14.36878 -14.18649 -13.83695 -13.60893 -13.10379 -12.87283 -12.64474 -12.52179 -12.34685 -12.10573 -12.01857 -11.82204 -11.23650 -11.18059 -11.10293 -11.02970 -10.71684 -10.48185 -10.16343 -10.03030 -9.86639 -9.52769 -9.06474 -8.71842 -8.16885 -8.13654 -7.82674 -6.33083 -4.35687 2.13511 2.20861 3.06170 3.19448 3.20190 3.46202 3.76042 4.12338 4.16712 4.61118 4.84781 4.96303 5.02217 5.10532 5.25184 5.36491 5.50716 5.54181 5.58196 5.68921 5.74084 5.82794 5.90682 5.97019 5.99959 6.10512 6.14443 6.15690 6.27500 6.35870 6.40305 6.43112 6.73087 6.85767 7.10856 7.16300 7.24997 7.27563 7.58994 7.78953 8.13159 8.29776 8.71121 9.09725 9.23818 10.78402 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.006098 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.050614 B = 4590.584402 C = 5681.407167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.165 4.165 4 H 0.106 0.894 5 C -0.196 4.196 6 C 0.095 3.905 7 H 0.133 0.867 8 N -0.707 5.707 9 C 0.535 3.465 10 O -0.557 6.557 11 C 0.033 3.967 12 H 0.060 0.940 13 C -0.505 4.505 14 H 0.084 0.916 15 C 0.081 3.919 16 N -0.880 5.880 17 Si 0.867 3.133 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.260 1.260 21 C -0.032 4.032 22 C -0.069 4.069 23 C -0.131 4.131 24 C -0.142 4.142 25 C -0.131 4.131 26 C -0.133 4.133 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.399 0.601 35 H 0.270 0.730 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 -2.839 -10.481 10.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.184 4.184 4 H 0.124 0.876 5 C -0.235 4.235 6 C -0.012 4.012 7 H 0.150 0.850 8 N -0.356 5.356 9 C 0.325 3.675 10 O -0.435 6.435 11 C 0.011 3.989 12 H 0.078 0.922 13 C -0.542 4.542 14 H 0.103 0.897 15 C -0.123 4.123 16 N -0.516 5.516 17 Si 0.693 3.307 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.185 1.185 21 C -0.033 4.033 22 C -0.087 4.087 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.149 4.149 26 C -0.152 4.152 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.233 0.767 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.728 -3.425 -10.369 10.944 hybrid contribution -0.628 1.400 -0.303 1.564 sum -1.357 -2.025 -10.672 10.946 Atomic orbital electron populations 1.21742 0.95631 1.01316 1.01866 1.21080 0.95779 0.94000 1.02045 1.22890 0.94792 0.98417 1.02343 0.87618 1.23607 1.05211 1.02340 0.92361 1.21593 0.93209 0.92222 0.94158 0.84962 1.45440 1.18236 1.17429 1.54465 1.21557 0.79779 0.90536 0.75619 1.90559 1.55483 1.36861 1.60550 1.18358 0.90166 0.92711 0.97683 0.92207 1.20556 1.32980 1.06231 0.94429 0.89749 1.25064 0.94233 0.98004 0.95024 1.69853 1.32363 1.32475 1.16886 0.86992 0.79257 0.83696 0.80718 1.19692 1.20821 1.18475 1.19954 0.95689 0.93669 0.93949 1.20938 0.93156 0.97785 0.96806 1.21062 0.94590 0.98824 1.00477 1.20884 0.98780 0.96349 0.99962 1.20882 0.94231 0.99049 1.00777 1.21003 0.94073 0.99293 1.00782 0.92819 0.92907 0.92584 0.91921 0.91404 0.88914 0.88507 0.76691 0.92031 0.86091 0.87063 0.87315 0.87237 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.87 37.16 0.37 -1.10 16 2 C -0.09 -1.03 6.22 -26.73 -0.17 -1.20 16 3 C -0.16 -2.15 5.66 -90.59 -0.51 -2.66 16 4 H 0.11 1.41 8.08 -51.93 -0.42 0.99 16 5 C -0.20 -2.46 10.11 -26.69 -0.27 -2.73 16 6 C 0.10 1.51 6.15 -67.93 -0.42 1.09 16 7 H 0.13 2.27 7.40 -51.92 -0.38 1.88 16 8 N -0.71 -13.19 5.57 -53.80 -0.30 -13.49 16 9 C 0.54 11.86 6.93 -10.99 -0.08 11.78 16 10 O -0.56 -13.45 14.79 5.56 0.08 -13.37 16 11 C 0.03 0.75 2.23 -94.08 -0.21 0.54 16 12 H 0.06 1.31 4.55 -51.93 -0.24 1.07 16 13 C -0.50 -13.28 8.25 -34.44 -0.28 -13.57 16 14 H 0.08 2.48 7.66 -52.48 -0.40 2.08 16 15 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 16 N -0.88 -25.03 13.96 55.43 0.77 -24.26 16 17 Si 0.87 19.39 26.93 -169.99 -4.58 14.81 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.26 -5.62 6.81 56.52 0.38 -5.23 16 21 C -0.03 -0.71 4.53 -104.63 -0.47 -1.18 16 22 C -0.07 -1.51 8.05 -39.58 -0.32 -1.82 16 23 C -0.13 -2.47 10.05 -39.58 -0.40 -2.86 16 24 C -0.14 -2.44 10.05 -39.59 -0.40 -2.83 16 25 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 26 C -0.13 -2.66 9.67 -39.58 -0.38 -3.04 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.64 7.88 -51.93 -0.41 0.24 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.10 1.07 8.03 -51.93 -0.42 0.65 16 34 H 0.40 6.95 8.83 -40.82 -0.36 6.59 16 35 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.12 2.80 7.41 -52.48 -0.39 2.41 16 37 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.11 2.01 7.96 -52.48 -0.42 1.59 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -29.70 336.53 -8.96 -38.66 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -5.97 Total: 12.81 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -4.04 Total: -20.24 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.47 Total: -37.74 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.37 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.58 Total: 14.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.70 -8.96 -38.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524741275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.963 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds