Wall clock time and date at job start Mon Mar 30 2020 02:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47345 * 2 1 4 4 H 1.09005 * 115.56305 * 29.30908 * 3 2 1 5 5 C 1.53072 * 117.49330 * 243.60064 * 3 2 1 6 6 C 1.52998 * 117.50245 * 174.99734 * 3 2 1 7 7 H 1.09008 * 117.49566 * 359.97438 * 6 3 2 8 8 N 1.46500 * 117.50346 * 214.97887 * 6 3 2 9 9 C 1.34774 * 120.00205 * 155.08577 * 8 6 3 10 10 O 1.21279 * 119.99598 * 359.97438 * 9 8 6 11 11 C 1.50699 * 119.99899 * 180.02562 * 9 8 6 12 12 H 1.09000 * 109.47097 * 323.03767 * 11 9 8 13 13 C 1.50693 * 109.47374 * 83.03894 * 11 9 8 14 14 H 1.08008 * 120.00026 * 55.84966 * 13 11 9 15 15 C 1.37878 * 120.00644 * 235.84676 * 13 11 9 16 16 N 1.31512 * 120.00592 * 175.60394 * 15 13 11 17 17 Si 1.86809 * 119.99349 * 355.60685 * 15 13 11 18 18 H 1.48498 * 109.47082 * 83.70652 * 17 15 13 19 19 H 1.48501 * 109.46740 * 203.70545 * 17 15 13 20 20 H 1.48498 * 109.47091 * 323.70306 * 17 15 13 21 21 C 1.50695 * 109.46942 * 203.04310 * 11 9 8 22 22 C 1.38233 * 119.99990 * 292.29708 * 21 11 9 23 23 C 1.38243 * 120.00221 * 179.76859 * 22 21 11 24 24 C 1.38232 * 119.99623 * 0.50714 * 23 22 21 25 25 C 1.38233 * 120.00338 * 359.74469 * 24 23 22 26 26 C 1.38233 * 120.00403 * 112.57315 * 21 11 9 27 27 H 1.09003 * 109.46971 * 60.00213 * 1 2 3 28 28 H 1.09002 * 109.47101 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47561 * 300.00024 * 1 2 3 30 30 H 1.09001 * 109.47343 * 239.99471 * 2 1 3 31 31 H 1.09003 * 109.46971 * 119.99787 * 2 1 3 32 32 H 1.09004 * 117.51000 * 145.03447 * 5 3 2 33 33 H 1.08993 * 117.51319 * 359.97438 * 5 3 2 34 34 H 0.97001 * 119.99607 * 335.08731 * 8 6 3 35 35 H 0.96996 * 119.99780 * 180.02562 * 16 15 13 36 36 H 1.08005 * 120.00162 * 359.97438 * 22 21 11 37 37 H 1.08000 * 119.99906 * 180.23655 * 23 22 21 38 38 H 1.08000 * 119.99622 * 179.72803 * 24 23 22 39 39 H 1.07995 * 120.00609 * 179.97438 * 25 24 23 40 40 H 1.08005 * 119.99927 * 0.02562 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8448 1.9074 -1.2162 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7718 0.1966 8 7 4.0097 2.8284 0.8699 9 6 5.2319 2.8273 1.4379 10 8 5.9511 1.8571 1.3272 11 6 5.7044 4.0313 2.2114 12 1 5.3475 4.9389 1.7246 13 6 5.1638 3.9693 3.6167 14 1 5.3579 3.1033 4.2323 15 6 4.4215 5.0180 4.1168 16 7 3.8771 4.9281 5.3106 17 14 4.1890 6.5668 3.0985 18 1 3.0624 6.3718 2.1510 19 1 3.8875 7.7096 3.9976 20 1 5.4324 6.8502 2.3376 21 6 7.2107 4.0424 2.2526 22 6 7.8899 3.0711 2.9641 23 6 9.2719 3.0784 2.9979 24 6 9.9743 4.0633 2.3290 25 6 9.2951 5.0376 1.6218 26 6 7.9132 5.0272 1.5837 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.7226 2.9426 -1.5350 33 1 3.0111 1.1856 -2.0158 34 1 3.4343 3.6042 0.9587 35 1 3.3546 5.6658 5.6621 36 1 7.3409 2.3044 3.4907 37 1 9.8025 2.3173 3.5506 38 1 11.0539 4.0716 2.3591 39 1 9.8438 5.8073 1.0996 40 1 7.3825 5.7890 1.0319 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524741275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:09 Heat of formation + Delta-G solvation = -22.075759 kcal Electronic energy + Delta-G solvation = -20668.511719 eV Core-core repulsion = 17640.392152 eV Total energy + Delta-G solvation = -3028.119567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05869 -39.69858 -38.48480 -35.52441 -34.49031 -33.39113 -32.11730 -31.62676 -29.46001 -25.75611 -24.72105 -23.53457 -23.32728 -22.04071 -21.63387 -20.84262 -19.14926 -17.97294 -17.77063 -17.21240 -16.43888 -15.89964 -15.65360 -15.35098 -15.29797 -15.20121 -14.82503 -14.51904 -14.14099 -13.77793 -13.63077 -13.54220 -13.31956 -12.95199 -12.90604 -12.78121 -12.15829 -12.08891 -11.98713 -11.95073 -11.92027 -11.70198 -11.43038 -10.99059 -10.91566 -10.57898 -9.64342 -9.57396 -9.37737 -8.37918 -6.47168 0.62929 0.70008 1.30324 1.37465 1.46243 1.79111 2.27538 2.31789 2.92085 2.98523 3.15054 3.73536 3.86239 4.04655 4.06801 4.19501 4.22955 4.27577 4.36021 4.41255 4.45967 4.49511 4.60868 4.79193 4.82616 4.88358 4.91128 4.98987 5.15133 5.19105 5.21354 5.27062 5.32554 5.37417 5.46762 5.66381 5.69726 5.74781 5.94061 6.17802 6.30466 6.55618 6.65314 7.16619 7.42059 8.77707 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.006098 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.050614 B = 4590.584402 C = 5681.407167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.153 4.153 4 H 0.105 0.895 5 C -0.165 4.165 6 C 0.053 3.947 7 H 0.112 0.888 8 N -0.698 5.698 9 C 0.530 3.470 10 O -0.587 6.587 11 C 0.036 3.964 12 H 0.075 0.925 13 C -0.506 4.506 14 H 0.028 0.972 15 C 0.028 3.972 16 N -0.933 5.933 17 Si 0.931 3.069 18 H -0.242 1.242 19 H -0.285 1.285 20 H -0.242 1.242 21 C -0.064 4.064 22 C -0.101 4.101 23 C -0.136 4.136 24 C -0.133 4.133 25 C -0.124 4.124 26 C -0.145 4.145 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.405 0.595 35 H 0.272 0.728 36 H 0.084 0.916 37 H 0.132 0.868 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.658 -1.043 -13.581 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.172 4.172 4 H 0.123 0.877 5 C -0.203 4.203 6 C -0.053 4.053 7 H 0.130 0.870 8 N -0.346 5.346 9 C 0.319 3.681 10 O -0.467 6.467 11 C 0.014 3.986 12 H 0.093 0.907 13 C -0.544 4.544 14 H 0.047 0.953 15 C -0.172 4.172 16 N -0.570 5.570 17 Si 0.752 3.248 18 H -0.165 1.165 19 H -0.211 1.211 20 H -0.166 1.166 21 C -0.065 4.065 22 C -0.119 4.119 23 C -0.154 4.154 24 C -0.151 4.151 25 C -0.142 4.142 26 C -0.163 4.163 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.241 0.759 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.150 0.850 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.266 -1.648 -13.504 13.607 hybrid contribution -0.710 0.711 0.694 1.221 sum -0.976 -0.937 -12.809 12.881 Atomic orbital electron populations 1.21716 0.94196 1.02260 1.02032 1.21125 0.96984 0.92790 1.02121 1.22976 0.92408 0.99566 1.02263 0.87671 1.23683 1.01680 1.03640 0.91290 1.21738 0.95044 0.90989 0.97498 0.87015 1.45324 1.17030 1.18495 1.53797 1.21414 0.80781 0.89922 0.75969 1.90527 1.56679 1.37621 1.61886 1.18273 0.91208 0.93579 0.95502 0.90749 1.20483 1.33356 1.04615 0.95898 0.95339 1.25952 0.93506 1.01577 0.96169 1.70013 1.33879 1.33871 1.19258 0.85970 0.80868 0.78396 0.79552 1.16528 1.21067 1.16599 1.20019 0.95323 0.95265 0.95890 1.20852 0.94845 0.97936 0.98311 1.21357 0.93286 1.00073 1.00711 1.21374 1.00880 0.94821 0.98020 1.21380 0.93394 0.99584 0.99793 1.21278 0.95524 0.98831 1.00710 0.91697 0.91648 0.93346 0.90450 0.92845 0.87671 0.86397 0.75947 0.91865 0.89723 0.84962 0.83072 0.83046 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.87 71.98 0.71 -1.88 16 2 C -0.09 -1.99 6.22 30.59 0.19 -1.80 16 3 C -0.15 -3.80 5.66 -10.77 -0.06 -3.86 16 4 H 0.11 2.65 8.08 -2.38 -0.02 2.63 16 5 C -0.16 -3.73 10.11 30.62 0.31 -3.42 16 6 C 0.05 1.69 6.15 44.99 0.28 1.97 16 7 H 0.11 4.01 7.40 -2.38 -0.02 3.99 16 8 N -0.70 -26.43 5.57 -442.53 -2.46 -28.90 16 9 C 0.53 24.45 6.93 87.66 0.61 25.06 16 10 O -0.59 -30.04 14.79 -3.03 -0.04 -30.09 16 11 C 0.04 1.70 2.23 -13.04 -0.03 1.67 16 12 H 0.07 3.19 4.55 -2.39 -0.01 3.18 16 13 C -0.51 -28.29 8.25 25.60 0.21 -28.08 16 14 H 0.03 1.85 7.66 -2.91 -0.02 1.83 16 15 C 0.03 1.53 5.47 84.66 0.46 1.99 16 16 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 17 Si 0.93 39.47 26.93 68.60 1.85 41.32 16 18 H -0.24 -9.06 7.11 99.48 0.71 -8.35 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.24 -9.53 6.81 99.48 0.68 -8.86 16 21 C -0.06 -2.92 4.53 -19.87 -0.09 -3.01 16 22 C -0.10 -4.65 8.05 22.27 0.18 -4.48 16 23 C -0.14 -5.06 10.05 22.27 0.22 -4.84 16 24 C -0.13 -4.14 10.05 22.27 0.22 -3.92 16 25 C -0.12 -3.90 10.05 22.27 0.22 -3.67 16 26 C -0.15 -5.53 9.67 22.27 0.22 -5.31 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.43 7.88 -2.39 -0.02 1.42 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.12 2.21 8.03 -2.39 -0.02 2.19 16 34 H 0.41 13.96 8.83 -92.71 -0.82 13.14 16 35 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.08 4.37 7.41 -2.91 -0.02 4.35 16 37 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 39 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 40 H 0.13 4.26 7.96 -2.91 -0.02 4.24 16 Total: -1.00 -69.98 336.53 3.47 -66.51 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: 0.18 Total: 39.95 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 3.65 Total: -33.57 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -2.16 Total: -84.13 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.04 Total: -30.09 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 1.85 Total: 41.32 kcal Total: -69.98 3.47 -66.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524741275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.433 kcal (2) G-P(sol) polarization free energy of solvation -69.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds