Wall clock time and date at job start Mon Mar 30 2020 01:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47463 * 2 1 4 4 C 1.50698 * 109.46904 * 120.00253 * 2 1 3 5 5 C 1.38264 * 120.08856 * 299.99885 * 4 2 1 6 6 C 1.37951 * 119.71677 * 180.21157 * 5 4 2 7 7 C 1.38837 * 120.51155 * 359.80997 * 6 5 4 8 8 C 1.37674 * 119.84186 * 359.86404 * 7 6 5 9 9 C 1.37906 * 120.08431 * 119.99737 * 4 2 1 10 10 C 1.50604 * 122.86212 * 180.77030 * 8 7 6 11 11 C 1.52798 * 110.84888 * 339.97452 * 10 8 7 12 12 N 1.47232 * 107.89893 * 47.47855 * 11 10 8 13 13 C 1.34779 * 121.33657 * 115.71289 * 12 11 10 14 14 O 1.21689 * 119.99746 * 354.79621 * 13 12 11 15 15 C 1.46375 * 120.00008 * 174.80034 * 13 12 11 16 16 H 1.07996 * 119.99799 * 4.99403 * 15 13 12 17 17 C 1.40047 * 119.99923 * 184.99180 * 15 13 12 18 18 N 1.30672 * 120.00048 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99747 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47210 * 90.00660 * 19 17 15 21 21 H 1.48502 * 109.47083 * 210.00323 * 19 17 15 22 22 H 1.48500 * 109.47478 * 330.00302 * 19 17 15 23 23 C 1.46675 * 117.32462 * 295.73290 * 12 11 10 24 24 H 1.09005 * 109.46601 * 300.00297 * 1 2 3 25 25 H 1.09006 * 109.46644 * 59.99527 * 1 2 3 26 26 H 1.08992 * 109.47282 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46601 * 239.99703 * 2 1 3 28 28 H 1.09005 * 109.46996 * 59.99952 * 3 2 1 29 29 H 1.09002 * 109.47488 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47119 * 300.00177 * 3 2 1 31 31 H 1.07998 * 120.14035 * 0.48102 * 5 4 2 32 32 H 1.08006 * 119.74667 * 179.84025 * 6 5 4 33 33 H 1.08002 * 119.71433 * 0.06652 * 9 4 2 34 34 H 1.08994 * 109.20228 * 219.62719 * 10 8 7 35 35 H 1.08996 * 109.20193 * 100.32483 * 10 8 7 36 36 H 1.08995 * 109.77514 * 287.87535 * 11 10 8 37 37 H 1.09003 * 109.77406 * 167.08062 * 11 10 8 38 38 H 0.97001 * 120.00040 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.43706 * 284.28779 * 23 12 11 40 40 H 1.08998 * 109.40520 * 164.39713 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6994 -0.2397 2.4871 6 6 2.1670 -0.8935 3.6083 7 6 2.9657 -2.0223 3.4842 8 6 3.2926 -2.4962 2.2336 9 6 2.8252 -1.8319 1.1059 10 6 4.1394 -3.7232 2.0203 11 6 4.9557 -4.0448 3.2713 12 7 4.0504 -3.9827 4.4307 13 6 3.7807 -5.0776 5.1689 14 8 4.2125 -6.1629 4.8276 15 6 2.9685 -4.9612 6.3810 16 1 2.5183 -4.0145 6.6405 17 6 2.7751 -6.0776 7.2042 18 7 3.3203 -7.2230 6.8905 19 14 1.7391 -5.9289 8.7514 20 1 0.3216 -6.2318 8.4290 21 1 2.2311 -6.8901 9.7709 22 1 1.8411 -4.5467 9.2845 23 6 3.4535 -2.6814 4.7499 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.0724 0.6335 2.5905 32 1 1.9094 -0.5246 4.5902 33 1 3.0850 -2.1974 0.1234 34 1 4.8173 -3.5500 1.1846 35 1 3.4926 -4.5690 1.7871 36 1 5.7552 -3.3133 3.3880 37 1 5.3799 -5.0454 3.1877 38 1 3.1867 -7.9962 7.4608 39 1 4.2011 -2.0461 5.2248 40 1 2.6145 -2.8251 5.4306 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558859954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:53 Heat of formation + Delta-G solvation = -29.362766 kcal Electronic energy + Delta-G solvation = -20789.797815 eV Core-core repulsion = 17761.362259 eV Total energy + Delta-G solvation = -3028.435555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.90444 -37.77875 -35.87409 -33.93704 -32.52622 -32.40913 -29.78801 -29.12548 -27.25496 -26.33876 -24.75917 -23.26024 -21.96164 -21.62148 -19.67279 -18.28420 -16.63753 -16.12454 -15.69657 -15.32354 -14.77429 -14.39160 -14.26408 -14.09140 -13.67240 -13.48736 -13.40389 -12.88998 -12.70081 -12.47589 -12.29413 -11.84749 -11.79594 -11.51568 -11.46783 -11.33185 -11.08444 -11.00598 -10.92587 -10.78217 -10.57094 -10.29986 -10.13949 -10.00833 -8.87164 -8.46774 -8.10315 -7.61308 -7.25717 -6.21596 -4.66600 1.62139 1.65584 3.13133 3.20000 3.22918 3.96620 4.07116 4.51105 4.55252 4.64834 4.76399 5.10921 5.14841 5.19143 5.23940 5.35231 5.48684 5.54504 5.62616 5.64726 5.69924 5.73354 5.82882 5.88766 5.93982 5.99028 6.11195 6.12831 6.22540 6.24974 6.30983 6.42706 6.49789 6.64447 6.75466 6.82000 7.01124 7.29663 7.43271 7.56712 8.10003 8.33985 9.00295 9.41574 10.55408 10.73891 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026515 B = 0.004453 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.754813 B = 6286.964606 C = 6905.829046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.142 4.142 4 C -0.088 4.088 5 C -0.121 4.121 6 C -0.115 4.115 7 C -0.085 4.085 8 C -0.060 4.060 9 C -0.122 4.122 10 C -0.096 4.096 11 C 0.120 3.880 12 N -0.642 5.642 13 C 0.562 3.438 14 O -0.576 6.576 15 C -0.544 4.544 16 H 0.072 0.928 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.264 1.264 23 C 0.161 3.839 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.269 0.731 39 H 0.057 0.943 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 15.220 -10.180 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.200 4.200 4 C -0.088 4.088 5 C -0.139 4.139 6 C -0.134 4.134 7 C -0.086 4.086 8 C -0.060 4.060 9 C -0.140 4.140 10 C -0.134 4.134 11 C -0.005 4.005 12 N -0.380 5.380 13 C 0.369 3.631 14 O -0.459 6.459 15 C -0.580 4.580 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.396 5.396 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.188 1.188 23 C 0.036 3.964 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.014 14.375 -10.297 17.937 hybrid contribution -0.611 0.209 0.707 0.958 sum -3.625 14.584 -9.589 17.826 Atomic orbital electron populations 1.21850 0.94584 1.02037 1.01591 1.20070 0.95765 0.95829 0.95572 1.21843 1.01192 0.95321 1.01602 1.19635 0.98567 0.96115 0.94438 1.20751 1.01012 1.00187 0.91990 1.21032 0.98168 0.95572 0.98625 1.20224 0.97344 0.95518 0.95502 1.19573 0.97931 0.96341 0.92205 1.21030 0.99139 0.95889 0.97918 1.20861 0.98129 0.95232 0.99182 1.21125 0.91910 1.02068 0.85361 1.48185 1.49548 1.08984 1.31290 1.18212 0.80597 0.81233 0.83081 1.90591 1.57047 1.25996 1.72230 1.20962 1.33036 0.97054 1.06987 0.91015 1.25722 0.94490 0.94601 0.98370 1.70012 1.34549 1.00287 1.34772 0.86391 0.80295 0.78942 0.81285 1.19699 1.20411 1.18825 1.20245 0.98212 0.85228 0.92666 0.92477 0.92725 0.92514 0.90839 0.92500 0.92611 0.92730 0.86640 0.86136 0.86759 0.91123 0.90522 0.93401 0.89355 0.92053 0.92521 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.01 37.16 0.33 -0.99 16 2 C -0.05 -0.54 3.09 -91.78 -0.28 -0.83 16 3 C -0.14 -1.25 9.01 37.15 0.33 -0.91 16 4 C -0.09 -1.13 4.77 -104.73 -0.50 -1.63 16 5 C -0.12 -1.58 8.72 -39.68 -0.35 -1.93 16 6 C -0.12 -1.69 9.62 -39.47 -0.38 -2.07 16 7 C -0.08 -1.46 5.82 -104.55 -0.61 -2.07 16 8 C -0.06 -1.01 5.76 -104.60 -0.60 -1.61 16 9 C -0.12 -1.74 9.22 -39.43 -0.36 -2.11 16 10 C -0.10 -1.63 5.87 -28.03 -0.16 -1.80 16 11 C 0.12 2.38 6.43 -3.75 -0.02 2.36 16 12 N -0.64 -14.92 2.93 -176.05 -0.52 -15.44 16 13 C 0.56 16.13 7.64 -12.99 -0.10 16.03 16 14 O -0.58 -18.69 14.54 5.20 0.08 -18.62 16 15 C -0.54 -15.27 8.83 -35.63 -0.31 -15.58 16 16 H 0.07 1.83 5.88 -52.49 -0.31 1.52 16 17 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 18 N -0.77 -22.96 11.84 55.55 0.66 -22.31 16 19 Si 0.91 20.02 29.56 -169.99 -5.02 14.99 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 23 C 0.16 3.12 6.02 -5.05 -0.03 3.09 16 24 H 0.06 0.52 7.39 -51.93 -0.38 0.13 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.71 7.87 -51.93 -0.41 0.30 16 28 H 0.06 0.49 7.41 -51.93 -0.38 0.10 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.12 1.25 7.13 -52.49 -0.37 0.87 16 32 H 0.12 1.53 8.05 -52.48 -0.42 1.11 16 33 H 0.11 1.43 7.93 -52.49 -0.42 1.01 16 34 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.93 7.10 -51.93 -0.37 1.56 16 38 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.10 2.00 5.70 -51.93 -0.30 1.70 16 LS Contribution 323.36 15.07 4.87 4.87 Total: -1.00 -33.49 323.36 -8.96 -42.45 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.88 Total: 1.74 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -3.14 Total: -7.69 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.14 Total: -37.75 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.08 Total: -18.62 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.49 -8.96 -42.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558859954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.085 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds