Wall clock time and date at job start Mon Mar 30 2020 01:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47463 * 2 1 4 4 C 1.50698 * 109.46904 * 120.00253 * 2 1 3 5 5 C 1.38264 * 120.08856 * 299.99885 * 4 2 1 6 6 C 1.37951 * 119.71677 * 180.21157 * 5 4 2 7 7 C 1.38837 * 120.51155 * 359.80997 * 6 5 4 8 8 C 1.37674 * 119.84186 * 359.86404 * 7 6 5 9 9 C 1.37906 * 120.08431 * 119.99737 * 4 2 1 10 10 C 1.50604 * 122.86212 * 180.77030 * 8 7 6 11 11 C 1.52798 * 110.84888 * 339.97452 * 10 8 7 12 12 N 1.47232 * 107.89893 * 47.47855 * 11 10 8 13 13 C 1.34779 * 121.33657 * 115.71289 * 12 11 10 14 14 O 1.21689 * 119.99746 * 354.79621 * 13 12 11 15 15 C 1.46375 * 120.00008 * 174.80034 * 13 12 11 16 16 H 1.07996 * 119.99799 * 4.99403 * 15 13 12 17 17 C 1.40047 * 119.99923 * 184.99180 * 15 13 12 18 18 N 1.30672 * 120.00048 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99747 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47210 * 90.00660 * 19 17 15 21 21 H 1.48502 * 109.47083 * 210.00323 * 19 17 15 22 22 H 1.48500 * 109.47478 * 330.00302 * 19 17 15 23 23 C 1.46675 * 117.32462 * 295.73290 * 12 11 10 24 24 H 1.09005 * 109.46601 * 300.00297 * 1 2 3 25 25 H 1.09006 * 109.46644 * 59.99527 * 1 2 3 26 26 H 1.08992 * 109.47282 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46601 * 239.99703 * 2 1 3 28 28 H 1.09005 * 109.46996 * 59.99952 * 3 2 1 29 29 H 1.09002 * 109.47488 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47119 * 300.00177 * 3 2 1 31 31 H 1.07998 * 120.14035 * 0.48102 * 5 4 2 32 32 H 1.08006 * 119.74667 * 179.84025 * 6 5 4 33 33 H 1.08002 * 119.71433 * 0.06652 * 9 4 2 34 34 H 1.08994 * 109.20228 * 219.62719 * 10 8 7 35 35 H 1.08996 * 109.20193 * 100.32483 * 10 8 7 36 36 H 1.08995 * 109.77514 * 287.87535 * 11 10 8 37 37 H 1.09003 * 109.77406 * 167.08062 * 11 10 8 38 38 H 0.97001 * 120.00040 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.43706 * 284.28779 * 23 12 11 40 40 H 1.08998 * 109.40520 * 164.39713 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6994 -0.2397 2.4871 6 6 2.1670 -0.8935 3.6083 7 6 2.9657 -2.0223 3.4842 8 6 3.2926 -2.4962 2.2336 9 6 2.8252 -1.8319 1.1059 10 6 4.1394 -3.7232 2.0203 11 6 4.9557 -4.0448 3.2713 12 7 4.0504 -3.9827 4.4307 13 6 3.7807 -5.0776 5.1689 14 8 4.2125 -6.1629 4.8276 15 6 2.9685 -4.9612 6.3810 16 1 2.5183 -4.0145 6.6405 17 6 2.7751 -6.0776 7.2042 18 7 3.3203 -7.2230 6.8905 19 14 1.7391 -5.9289 8.7514 20 1 0.3216 -6.2318 8.4290 21 1 2.2311 -6.8901 9.7709 22 1 1.8411 -4.5467 9.2845 23 6 3.4535 -2.6814 4.7499 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.0724 0.6335 2.5905 32 1 1.9094 -0.5246 4.5902 33 1 3.0850 -2.1974 0.1234 34 1 4.8173 -3.5500 1.1846 35 1 3.4926 -4.5690 1.7871 36 1 5.7552 -3.3133 3.3880 37 1 5.3799 -5.0454 3.1877 38 1 3.1867 -7.9962 7.4608 39 1 4.2011 -2.0461 5.2248 40 1 2.6145 -2.8251 5.4306 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558859954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:53 Heat of formation + Delta-G solvation = -48.844691 kcal Electronic energy + Delta-G solvation = -20790.642614 eV Core-core repulsion = 17761.362259 eV Total energy + Delta-G solvation = -3029.280355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17446 -39.47685 -37.33629 -35.35333 -34.61247 -33.85521 -31.08637 -30.50377 -28.33952 -27.92240 -26.22823 -24.69784 -23.20529 -22.82838 -21.23143 -19.74868 -18.39299 -17.79845 -17.21748 -16.61905 -16.23272 -16.08108 -15.55253 -15.46029 -14.89029 -14.71424 -14.42395 -14.39080 -13.98609 -13.92606 -13.41575 -13.30175 -13.16656 -13.02308 -12.88253 -12.72660 -12.59400 -12.35353 -12.28230 -12.00551 -11.90750 -11.77646 -11.46690 -11.35364 -10.94613 -9.87807 -9.59984 -9.30682 -9.10308 -8.31260 -6.86738 0.47063 0.52048 1.39017 1.40599 1.55886 2.22613 2.43526 2.77933 2.83265 3.54070 3.72110 3.79293 3.97489 4.05249 4.17076 4.24801 4.32032 4.38402 4.49599 4.52165 4.60078 4.70110 4.75063 4.79900 4.86583 4.88098 5.01828 5.03596 5.04690 5.13268 5.24397 5.27537 5.34182 5.39690 5.44704 5.57558 5.65877 5.78821 5.85439 6.08543 6.17140 6.36666 6.85428 7.38662 8.43135 8.64894 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026515 B = 0.004453 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.754813 B = 6286.964606 C = 6905.829046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.140 4.140 4 C -0.081 4.081 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.111 4.111 8 C -0.082 4.082 9 C -0.127 4.127 10 C -0.086 4.086 11 C 0.116 3.884 12 N -0.646 5.646 13 C 0.544 3.456 14 O -0.631 6.631 15 C -0.569 4.569 16 H 0.092 0.908 17 C 0.029 3.971 18 N -0.822 5.822 19 Si 0.996 3.004 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.245 1.245 23 C 0.162 3.838 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.275 0.725 39 H 0.070 0.930 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 18.419 -10.526 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.081 4.081 5 C -0.134 4.134 6 C -0.135 4.135 7 C -0.112 4.112 8 C -0.082 4.082 9 C -0.144 4.144 10 C -0.124 4.124 11 C -0.008 4.008 12 N -0.382 5.382 13 C 0.350 3.650 14 O -0.518 6.518 15 C -0.605 4.605 16 H 0.110 0.890 17 C -0.186 4.186 18 N -0.452 5.452 19 Si 0.815 3.185 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.168 1.168 23 C 0.039 3.961 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.122 0.878 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.724 17.645 -10.677 21.157 hybrid contribution -0.057 -0.696 0.696 0.985 sum -4.781 16.949 -9.981 20.242 Atomic orbital electron populations 1.21848 0.93774 1.01620 1.02725 1.20143 0.96334 0.96460 0.94254 1.21827 1.00873 0.94326 1.02678 1.20036 0.97024 0.95261 0.95777 1.21083 1.00409 1.00547 0.91397 1.21226 0.97367 0.94703 1.00248 1.20103 0.99514 0.97095 0.94449 1.19611 0.98959 0.96532 0.93073 1.21212 0.99221 0.96200 0.97813 1.20728 0.98095 0.95028 0.98500 1.21272 0.92531 1.01100 0.85859 1.48030 1.49567 1.09276 1.31376 1.18627 0.80621 0.81748 0.83992 1.90534 1.59118 1.28420 1.73730 1.21490 1.33393 0.98416 1.07235 0.88979 1.27006 0.95509 0.93660 1.02435 1.70188 1.36517 1.01607 1.36879 0.85045 0.77927 0.79876 0.75655 1.18727 1.19687 1.16838 1.20318 0.98023 0.83553 0.94228 0.92136 0.90897 0.93707 0.90272 0.92141 0.93127 0.91025 0.83833 0.84436 0.85073 0.87824 0.92886 0.91120 0.92325 0.91549 0.91211 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.01 71.98 0.65 -1.50 16 2 C -0.05 -0.89 3.09 -11.54 -0.04 -0.93 16 3 C -0.14 -1.92 9.01 71.98 0.65 -1.27 16 4 C -0.08 -1.85 4.77 -19.94 -0.10 -1.95 16 5 C -0.12 -2.66 8.72 22.21 0.19 -2.47 16 6 C -0.12 -3.18 9.62 22.34 0.21 -2.96 16 7 C -0.11 -3.73 5.82 -19.82 -0.12 -3.85 16 8 C -0.08 -2.67 5.76 -19.85 -0.11 -2.78 16 9 C -0.13 -3.38 9.22 22.37 0.21 -3.17 16 10 C -0.09 -2.96 5.87 29.75 0.17 -2.78 16 11 C 0.12 4.80 6.43 86.17 0.55 5.36 16 12 N -0.65 -31.20 2.93 -829.12 -2.43 -33.64 16 13 C 0.54 32.74 7.64 86.36 0.66 33.40 16 14 O -0.63 -43.56 14.54 -4.31 -0.06 -43.62 16 15 C -0.57 -32.81 8.83 24.83 0.22 -32.59 16 16 H 0.09 4.74 5.88 -2.91 -0.02 4.72 16 17 C 0.03 1.63 5.50 85.30 0.47 2.10 16 18 N -0.82 -51.14 11.84 21.84 0.26 -50.88 16 19 Si 1.00 41.22 29.56 68.60 2.03 43.25 16 20 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 23 C 0.16 6.33 6.02 85.63 0.52 6.85 16 24 H 0.06 0.87 7.39 -2.38 -0.02 0.85 16 25 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 1.26 7.87 -2.38 -0.02 1.24 16 28 H 0.06 0.79 7.41 -2.38 -0.02 0.77 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.14 2.47 7.13 -2.91 -0.02 2.45 16 32 H 0.14 3.16 8.05 -2.91 -0.02 3.13 16 33 H 0.13 2.97 7.93 -2.91 -0.02 2.95 16 34 H 0.10 2.81 8.11 -2.39 -0.02 2.80 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.06 2.75 7.10 -2.39 -0.02 2.73 16 38 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.09 3.57 5.70 -2.39 -0.01 3.56 16 Total: -1.00 -76.88 323.36 4.96 -71.92 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 1.03 Total: 21.51 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 4.14 Total: -8.54 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -2.17 Total: -84.52 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -0.06 Total: -43.62 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -76.88 4.96 -71.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558859954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.070 kcal (2) G-P(sol) polarization free energy of solvation -76.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds