Wall clock time and date at job start Mon Mar 30 2020 01:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50699 * 119.99630 * 2 1 4 4 C 1.50695 * 120.00069 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.46732 * 95.00351 * 4 2 1 6 6 N 1.46503 * 109.46980 * 179.97438 * 5 4 2 7 7 C 1.34779 * 120.00328 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99419 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00080 * 180.02562 * 7 6 5 10 10 H 1.09001 * 109.47295 * 299.99387 * 9 7 6 11 11 C 1.50696 * 109.47530 * 59.99483 * 9 7 6 12 12 H 1.07997 * 120.00260 * 235.33651 * 11 9 7 13 13 C 1.37879 * 119.99977 * 55.33425 * 11 9 7 14 14 N 1.31516 * 119.99735 * 1.97120 * 13 11 9 15 15 Si 1.86800 * 120.00111 * 181.96775 * 13 11 9 16 16 H 1.48495 * 109.47133 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46977 * 120.00228 * 15 13 11 18 18 H 1.48496 * 109.47065 * 239.99944 * 15 13 11 19 19 C 1.50707 * 109.46942 * 179.97438 * 9 7 6 20 20 C 1.38224 * 120.00104 * 47.22099 * 19 9 7 21 21 C 1.38237 * 120.00255 * 180.02562 * 20 19 9 22 22 C 1.38238 * 119.99745 * 359.95072 * 21 20 19 23 23 C 1.38236 * 119.99912 * 0.02562 * 22 21 20 24 24 C 1.38232 * 119.99717 * 227.19961 * 19 9 7 25 25 H 1.08002 * 119.99503 * 180.02562 * 1 2 3 26 26 H 1.07993 * 120.00270 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47172 * 270.00185 * 3 2 1 28 28 H 1.09004 * 109.47311 * 29.99551 * 3 2 1 29 29 H 1.08995 * 109.47208 * 149.99881 * 3 2 1 30 30 H 1.08997 * 109.47495 * 335.00052 * 4 2 1 31 31 H 1.09001 * 109.46805 * 214.99786 * 4 2 1 32 32 H 1.09000 * 109.47119 * 60.00084 * 5 4 2 33 33 H 1.09001 * 109.47533 * 299.99391 * 5 4 2 34 34 H 0.97004 * 120.00070 * 359.97438 * 6 5 4 35 35 H 0.97003 * 120.00319 * 179.97438 * 14 13 11 36 36 H 1.08000 * 120.00315 * 359.97438 * 20 19 9 37 37 H 1.07994 * 120.00683 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00281 * 179.72897 * 22 21 20 39 39 H 1.07996 * 120.00326 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00068 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 0.0006 5 6 2.4275 -1.6844 -1.4363 6 7 3.1606 -2.9528 -1.4357 7 6 3.5862 -3.4857 -2.5982 8 8 3.3620 -2.9153 -3.6448 9 6 4.3398 -4.7907 -2.5976 10 1 5.2502 -4.6844 -2.0078 11 6 3.4757 -5.8696 -1.9973 12 1 3.8372 -6.4474 -1.1597 13 6 2.2233 -6.1189 -2.5175 14 7 1.7984 -5.4419 -3.5619 15 14 1.1304 -7.4185 -1.7390 16 1 1.8359 -8.0324 -0.5856 17 1 -0.1300 -6.7888 -1.2697 18 1 0.8160 -8.4668 -2.7427 19 6 4.6984 -5.1644 -4.0129 20 6 5.2580 -4.2225 -4.8557 21 6 5.5864 -4.5650 -6.1541 22 6 5.3561 -5.8499 -6.6092 23 6 4.7969 -6.7919 -5.7662 24 6 4.4680 -6.4491 -4.4680 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 2.2451 1.6198 -1.0277 28 1 1.4744 2.0648 0.5138 29 1 3.0159 1.1749 0.5138 30 1 1.4387 -2.0852 0.4352 31 1 2.9743 -1.1985 0.5900 32 1 3.0524 -0.9042 -1.8709 33 1 1.5169 -1.7910 -2.0257 34 1 3.3403 -3.4088 -0.5986 35 1 0.9175 -5.6175 -3.9281 36 1 5.4379 -3.2187 -4.5002 37 1 6.0233 -3.8291 -6.8127 38 1 5.6086 -6.1164 -7.6249 39 1 4.6166 -7.7956 -6.1218 40 1 4.0315 -7.1852 -3.8092 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583295204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:00 Heat of formation + Delta-G solvation = -23.220624 kcal Electronic energy + Delta-G solvation = -20957.508236 eV Core-core repulsion = 17929.339024 eV Total energy + Delta-G solvation = -3028.169212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.70847 -39.19564 -37.62132 -35.47074 -34.91666 -32.64105 -31.34393 -30.46954 -28.75079 -28.06320 -25.85910 -24.09292 -22.93532 -22.12696 -21.03314 -19.30690 -18.53085 -17.52985 -17.02688 -16.70907 -16.62114 -16.30475 -15.58367 -15.45022 -15.22341 -14.92390 -14.42213 -14.22615 -13.99102 -13.93462 -13.66237 -13.50593 -13.00165 -12.83846 -12.79339 -12.55031 -12.49265 -12.28303 -12.10736 -11.91608 -11.76132 -11.40482 -11.14850 -10.65063 -10.18483 -9.93808 -9.64500 -9.37033 -9.08867 -8.06675 -6.26606 0.88659 0.94099 1.28341 1.39696 1.45657 1.53992 2.33148 2.46635 2.82286 3.20721 3.36557 3.94689 4.02372 4.17473 4.34076 4.35093 4.36703 4.51131 4.58729 4.67810 4.70380 4.78861 4.86045 4.98974 5.01607 5.03867 5.07346 5.13598 5.16481 5.21200 5.46663 5.55633 5.70680 5.71156 5.89355 5.92767 5.96819 5.98417 6.00858 6.43806 6.54076 6.77224 7.11386 7.42427 7.94690 8.92350 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.006030 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.554717 B = 4642.673834 C = 5906.537984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.117 4.117 4 C -0.086 4.086 5 C 0.140 3.860 6 N -0.729 5.729 7 C 0.547 3.453 8 O -0.586 6.586 9 C 0.045 3.955 10 H 0.070 0.930 11 C -0.532 4.532 12 H 0.073 0.927 13 C 0.038 3.962 14 N -0.875 5.875 15 Si 0.941 3.059 16 H -0.257 1.257 17 H -0.290 1.290 18 H -0.288 1.288 19 C -0.035 4.035 20 C -0.119 4.119 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.087 4.087 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.024 0.976 34 H 0.406 0.594 35 H 0.254 0.746 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.581 6.254 5.921 8.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.131 4.131 3 C -0.174 4.174 4 C -0.123 4.123 5 C 0.016 3.984 6 N -0.381 5.381 7 C 0.336 3.664 8 O -0.466 6.466 9 C 0.024 3.976 10 H 0.088 0.912 11 C -0.570 4.570 12 H 0.091 0.909 13 C -0.167 4.167 14 N -0.509 5.509 15 Si 0.767 3.233 16 H -0.180 1.180 17 H -0.217 1.217 18 H -0.214 1.214 19 C -0.036 4.036 20 C -0.137 4.137 21 C -0.165 4.165 22 C -0.160 4.160 23 C -0.171 4.171 24 C -0.105 4.105 25 H 0.107 0.893 26 H 0.132 0.868 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.241 0.759 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.147 0.853 38 H 0.156 0.844 39 H 0.144 0.856 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.264 6.699 5.052 8.690 hybrid contribution -1.171 -0.888 0.415 1.527 sum 1.093 5.811 5.466 8.052 Atomic orbital electron populations 1.23863 0.95423 1.02323 1.01980 1.21771 0.95604 0.95767 0.99979 1.20891 1.00500 0.93632 1.02368 1.20819 1.01359 0.95425 0.94742 1.20986 0.94728 0.85608 0.97071 1.45743 1.58836 1.23969 1.09586 1.21062 0.77866 0.85116 0.82348 1.90499 1.59238 1.63930 1.32960 1.18026 0.95548 0.91793 0.92220 0.91244 1.20935 1.00131 1.18729 1.17174 0.90859 1.25608 0.99031 0.97406 0.94620 1.70262 1.18346 1.40268 1.22067 0.85754 0.78981 0.79544 0.78971 1.18038 1.21666 1.21390 1.19938 0.93864 0.93319 0.96519 1.21039 0.99669 0.98016 0.94970 1.21195 1.02434 0.97152 0.95679 1.21179 1.01325 0.93474 0.99973 1.21319 1.01335 1.00050 0.94353 1.21132 0.96971 0.96947 0.95492 0.89322 0.86802 0.91722 0.90438 0.90955 0.91010 0.88873 0.93033 0.95748 0.75942 0.93639 0.88322 0.85253 0.84403 0.85593 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.57 13.89 67.77 0.94 -3.62 16 2 C -0.13 -3.06 5.31 -16.50 -0.09 -3.15 16 3 C -0.12 -2.19 10.03 71.24 0.71 -1.48 16 4 C -0.09 -2.24 5.49 29.85 0.16 -2.07 16 5 C 0.14 4.99 5.66 86.38 0.49 5.47 16 6 N -0.73 -29.15 5.45 -463.05 -2.53 -31.67 16 7 C 0.55 26.58 5.45 87.66 0.48 27.06 16 8 O -0.59 -32.68 13.95 -3.04 -0.04 -32.72 16 9 C 0.05 2.17 2.78 -13.03 -0.04 2.13 16 10 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 11 C -0.53 -25.95 7.12 25.60 0.18 -25.76 16 12 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 13 C 0.04 1.91 3.99 84.65 0.34 2.25 16 14 N -0.88 -49.15 10.88 21.45 0.23 -48.91 16 15 Si 0.94 40.89 29.54 68.60 2.03 42.92 16 16 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 19 C -0.04 -1.73 4.52 -19.87 -0.09 -1.82 16 20 C -0.12 -5.50 8.21 22.27 0.18 -5.31 16 21 C -0.15 -5.90 10.05 22.27 0.22 -5.67 16 22 C -0.14 -5.36 10.05 22.27 0.22 -5.13 16 23 C -0.15 -6.28 10.05 22.27 0.22 -6.05 16 24 C -0.09 -4.15 8.20 22.27 0.18 -3.96 16 25 H 0.09 2.17 7.99 -2.91 -0.02 2.15 16 26 H 0.11 2.15 8.04 -2.91 -0.02 2.13 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.18 8.06 -2.38 -0.02 1.16 16 29 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 30 H 0.07 1.90 7.99 -2.39 -0.02 1.88 16 31 H 0.09 2.05 8.10 -2.39 -0.02 2.03 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.41 14.26 8.36 -92.70 -0.77 13.49 16 35 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.10 4.61 7.01 -2.91 -0.02 4.59 16 37 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 38 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.11 5.53 6.02 -2.91 -0.02 5.51 16 Total: -1.00 -64.56 334.44 4.06 -60.50 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: 0.24 Total: 37.03 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 4.13 Total: -27.13 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -2.29 Total: -80.59 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.04 Total: -32.72 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -64.56 4.06 -60.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583295204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.277 kcal (2) G-P(sol) polarization free energy of solvation -64.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds