Wall clock time and date at job start Mon Mar 30 2020 01:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50704 * 109.47173 * 2 1 4 4 C 1.31002 * 119.99971 * 127.22588 * 3 2 1 5 5 C 1.50699 * 119.99971 * 7.62015 * 4 3 2 6 6 N 1.46499 * 109.47089 * 126.97189 * 5 4 3 7 7 C 1.34784 * 119.99894 * 180.02562 * 6 5 4 8 8 O 1.21273 * 120.00117 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99641 * 179.97438 * 7 6 5 10 10 H 1.09000 * 109.47405 * 59.99975 * 9 7 6 11 11 C 1.50701 * 109.47396 * 299.99648 * 9 7 6 12 12 H 1.07991 * 119.99708 * 325.12284 * 11 9 7 13 13 C 1.37881 * 119.99654 * 145.12211 * 11 9 7 14 14 N 1.31517 * 119.99678 * 184.98010 * 13 11 9 15 15 Si 1.86790 * 120.00317 * 4.97717 * 13 11 9 16 16 H 1.48509 * 109.47181 * 84.74816 * 15 13 11 17 17 H 1.48500 * 109.47131 * 204.74771 * 15 13 11 18 18 H 1.48506 * 109.47375 * 324.74979 * 15 13 11 19 19 C 1.50699 * 109.46836 * 179.97438 * 9 7 6 20 20 C 1.38233 * 120.00128 * 65.07836 * 19 9 7 21 21 C 1.38241 * 119.99914 * 179.81106 * 20 19 9 22 22 C 1.38229 * 119.99986 * 0.39639 * 21 20 19 23 23 C 1.38234 * 120.00190 * 359.85517 * 22 21 20 24 24 C 1.38233 * 119.99758 * 359.95743 * 23 22 21 25 25 H 1.08998 * 109.47116 * 299.99612 * 1 2 3 26 26 H 1.09000 * 109.47568 * 59.99975 * 1 2 3 27 27 H 1.09006 * 109.46846 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47209 * 240.00702 * 2 1 3 29 29 H 1.09000 * 109.47568 * 120.00025 * 2 1 3 30 30 H 1.08002 * 120.00180 * 307.23732 * 3 2 1 31 31 H 1.07996 * 119.99716 * 187.61359 * 4 3 2 32 32 H 1.08999 * 109.47414 * 6.97217 * 5 4 3 33 33 H 1.08994 * 109.46914 * 246.97209 * 5 4 3 34 34 H 0.97001 * 120.00393 * 359.97438 * 6 5 4 35 35 H 0.96992 * 120.00104 * 179.97438 * 14 13 11 36 36 H 1.08000 * 119.99780 * 359.97438 * 20 19 9 37 37 H 1.08003 * 119.99922 * 180.22933 * 21 20 19 38 38 H 1.08002 * 119.99700 * 179.83323 * 22 21 20 39 39 H 1.07999 * 120.00206 * 179.97438 * 23 22 21 40 40 H 1.08005 * 119.99658 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8977 1.8096 0.9034 5 6 3.5209 0.8007 1.8333 6 7 4.9797 0.9234 1.7802 7 6 5.7518 0.1160 2.5343 8 8 5.2389 -0.7117 3.2571 9 6 7.2525 0.2419 2.4792 10 1 7.5444 1.2465 2.7853 11 6 7.7266 -0.0119 1.0714 12 1 7.2192 -0.7377 0.4534 13 6 8.8083 0.6826 0.5725 14 7 9.1617 0.5338 -0.6855 15 14 9.7715 1.8347 1.6833 16 1 10.7904 1.0597 2.4361 17 1 10.4462 2.8687 0.8582 18 1 8.8438 2.4917 2.6389 19 6 7.8757 -0.7670 3.4092 20 6 7.7336 -2.1188 3.1579 21 6 8.3085 -3.0442 4.0089 22 6 9.0186 -2.6178 5.1156 23 6 9.1563 -1.2660 5.3698 24 6 8.5846 -0.3407 4.5167 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.6787 2.1187 -0.7446 31 1 3.1646 2.8531 0.9816 32 1 3.2294 -0.2041 1.5273 33 1 3.1776 0.9843 2.8513 34 1 5.3901 1.5852 1.2018 35 1 9.9224 1.0226 -1.0366 36 1 7.1756 -2.4520 2.2953 37 1 8.2007 -4.1004 3.8105 38 1 9.4655 -3.3409 5.7818 39 1 9.7107 -0.9329 6.2346 40 1 8.6919 0.7155 4.7155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583745479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:07 Heat of formation + Delta-G solvation = -5.803465 kcal Electronic energy + Delta-G solvation = -20561.774175 eV Core-core repulsion = 17534.360228 eV Total energy + Delta-G solvation = -3027.413947 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.32796 -37.98416 -36.51486 -33.66204 -33.50311 -31.49887 -30.54556 -30.10739 -27.92088 -25.62792 -23.47079 -23.19280 -21.83410 -20.97776 -19.39469 -18.42245 -17.13475 -16.22471 -16.10869 -15.91426 -15.04331 -14.59928 -14.25036 -14.23236 -13.98851 -13.56644 -13.51681 -12.88212 -12.66812 -12.59070 -12.29252 -12.12637 -12.09179 -11.83214 -11.74403 -11.13580 -11.03494 -10.98480 -10.47729 -10.43550 -10.21636 -9.90511 -9.51927 -9.21081 -8.92339 -8.63953 -8.29145 -8.10981 -7.78523 -6.29551 -4.33425 2.12129 2.19406 2.25968 3.15596 3.23563 3.28206 3.63126 4.14623 4.22843 4.67852 4.77374 5.01939 5.02805 5.16935 5.29907 5.49323 5.57292 5.59978 5.62226 5.73510 5.81557 5.86417 5.98176 6.00088 6.06369 6.15155 6.22649 6.32697 6.35345 6.49135 6.65112 6.77074 6.83197 6.87917 7.16750 7.19656 7.27789 7.30782 7.61813 7.82505 8.21606 8.34276 8.71093 9.14972 9.28566 10.81496 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.005637 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.854794 B = 4965.714894 C = 6046.193746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.141 4.141 4 C -0.172 4.172 5 C 0.141 3.859 6 N -0.724 5.724 7 C 0.535 3.465 8 O -0.564 6.564 9 C 0.018 3.982 10 H 0.073 0.927 11 C -0.509 4.509 12 H 0.082 0.918 13 C 0.085 3.915 14 N -0.883 5.883 15 Si 0.866 3.134 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.262 1.262 19 C -0.027 4.027 20 C -0.073 4.073 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.129 4.129 24 C -0.137 4.137 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.406 0.594 35 H 0.269 0.731 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.092 1.669 4.094 10.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.160 4.160 4 C -0.190 4.190 5 C 0.018 3.982 6 N -0.376 5.376 7 C 0.324 3.676 8 O -0.443 6.443 9 C -0.003 4.003 10 H 0.091 0.909 11 C -0.547 4.547 12 H 0.100 0.900 13 C -0.120 4.120 14 N -0.519 5.519 15 Si 0.693 3.307 16 H -0.192 1.192 17 H -0.211 1.211 18 H -0.187 1.187 19 C -0.028 4.028 20 C -0.091 4.091 21 C -0.147 4.147 22 C -0.162 4.162 23 C -0.147 4.147 24 C -0.156 4.156 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.241 0.759 35 H 0.079 0.921 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.324 1.130 4.450 10.393 hybrid contribution 0.918 1.042 0.067 1.391 sum -8.405 2.172 4.516 9.786 Atomic orbital electron populations 1.21682 0.95204 1.01569 1.01693 1.20878 0.95895 0.94845 1.03399 1.22825 0.98333 0.97438 0.97375 1.22889 0.98904 0.99463 0.97740 1.20374 0.81321 0.98212 0.98323 1.45852 1.05073 1.40014 1.46661 1.21124 0.90157 0.79122 0.77234 1.90586 1.76121 1.36410 1.41145 1.18584 0.88418 0.96217 0.97113 0.90945 1.20531 1.15586 1.25028 0.93517 0.90005 1.24979 0.96336 0.96015 0.94648 1.69863 1.27035 1.41830 1.13171 0.87015 0.81260 0.81241 0.81148 1.19153 1.21149 1.18709 1.20077 0.95106 0.95110 0.92463 1.20842 0.97493 0.92563 0.98185 1.21032 0.99118 0.98904 0.95680 1.20856 1.01538 0.95404 0.98392 1.20878 1.00955 0.93433 0.99413 1.20975 1.00429 0.98787 0.95376 0.92734 0.92851 0.92619 0.90958 0.90237 0.87087 0.86792 0.90762 0.91832 0.75889 0.92141 0.86540 0.87133 0.87341 0.87282 0.87432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.89 37.15 0.37 -0.96 16 2 C -0.11 -1.28 6.02 -27.88 -0.17 -1.45 16 3 C -0.14 -1.63 9.51 -36.02 -0.34 -1.97 16 4 C -0.17 -2.19 9.63 -36.03 -0.35 -2.53 16 5 C 0.14 2.20 5.76 -5.19 -0.03 2.17 16 6 N -0.72 -13.43 5.45 -61.48 -0.33 -13.77 16 7 C 0.53 11.76 7.04 -10.98 -0.08 11.68 16 8 O -0.56 -13.50 15.37 5.56 0.09 -13.41 16 9 C 0.02 0.42 1.89 -94.08 -0.18 0.24 16 10 H 0.07 1.63 4.89 -51.93 -0.25 1.37 16 11 C -0.51 -13.12 8.06 -34.44 -0.28 -13.40 16 12 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 13 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 14 N -0.88 -24.97 13.96 55.43 0.77 -24.19 16 15 Si 0.87 19.98 27.18 -169.99 -4.62 15.36 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.26 -5.61 6.06 56.52 0.34 -5.27 16 19 C -0.03 -0.60 4.09 -104.62 -0.43 -1.03 16 20 C -0.07 -1.61 8.26 -39.58 -0.33 -1.94 16 21 C -0.13 -2.48 10.05 -39.58 -0.40 -2.87 16 22 C -0.14 -2.55 10.05 -39.59 -0.40 -2.95 16 23 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 24 C -0.14 -2.84 9.46 -39.58 -0.37 -3.22 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.98 5.30 -51.93 -0.28 0.71 16 30 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.07 1.21 5.30 -51.93 -0.28 0.94 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.41 7.22 8.35 -40.82 -0.34 6.88 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.12 2.66 7.93 -52.49 -0.42 2.25 16 37 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.11 2.06 7.95 -52.48 -0.42 1.64 16 LS Contribution 334.53 15.07 5.04 5.04 Total: -1.00 -29.77 334.53 -8.35 -38.13 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.82 Total: 11.68 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -3.47 Total: -18.83 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.44 Total: -37.96 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.62 Total: 15.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.77 -8.35 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583745479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.322 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds