Wall clock time and date at job start Mon Mar 30 2020 01:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50704 * 109.47173 * 2 1 4 4 C 1.31002 * 119.99971 * 127.22588 * 3 2 1 5 5 C 1.50699 * 119.99971 * 7.62015 * 4 3 2 6 6 N 1.46499 * 109.47089 * 126.97189 * 5 4 3 7 7 C 1.34784 * 119.99894 * 180.02562 * 6 5 4 8 8 O 1.21273 * 120.00117 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99641 * 179.97438 * 7 6 5 10 10 H 1.09000 * 109.47405 * 59.99975 * 9 7 6 11 11 C 1.50701 * 109.47396 * 299.99648 * 9 7 6 12 12 H 1.07991 * 119.99708 * 325.12284 * 11 9 7 13 13 C 1.37881 * 119.99654 * 145.12211 * 11 9 7 14 14 N 1.31517 * 119.99678 * 184.98010 * 13 11 9 15 15 Si 1.86790 * 120.00317 * 4.97717 * 13 11 9 16 16 H 1.48509 * 109.47181 * 84.74816 * 15 13 11 17 17 H 1.48500 * 109.47131 * 204.74771 * 15 13 11 18 18 H 1.48506 * 109.47375 * 324.74979 * 15 13 11 19 19 C 1.50699 * 109.46836 * 179.97438 * 9 7 6 20 20 C 1.38233 * 120.00128 * 65.07836 * 19 9 7 21 21 C 1.38241 * 119.99914 * 179.81106 * 20 19 9 22 22 C 1.38229 * 119.99986 * 0.39639 * 21 20 19 23 23 C 1.38234 * 120.00190 * 359.85517 * 22 21 20 24 24 C 1.38233 * 119.99758 * 359.95743 * 23 22 21 25 25 H 1.08998 * 109.47116 * 299.99612 * 1 2 3 26 26 H 1.09000 * 109.47568 * 59.99975 * 1 2 3 27 27 H 1.09006 * 109.46846 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47209 * 240.00702 * 2 1 3 29 29 H 1.09000 * 109.47568 * 120.00025 * 2 1 3 30 30 H 1.08002 * 120.00180 * 307.23732 * 3 2 1 31 31 H 1.07996 * 119.99716 * 187.61359 * 4 3 2 32 32 H 1.08999 * 109.47414 * 6.97217 * 5 4 3 33 33 H 1.08994 * 109.46914 * 246.97209 * 5 4 3 34 34 H 0.97001 * 120.00393 * 359.97438 * 6 5 4 35 35 H 0.96992 * 120.00104 * 179.97438 * 14 13 11 36 36 H 1.08000 * 119.99780 * 359.97438 * 20 19 9 37 37 H 1.08003 * 119.99922 * 180.22933 * 21 20 19 38 38 H 1.08002 * 119.99700 * 179.83323 * 22 21 20 39 39 H 1.07999 * 120.00206 * 179.97438 * 23 22 21 40 40 H 1.08005 * 119.99658 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8977 1.8096 0.9034 5 6 3.5209 0.8007 1.8333 6 7 4.9797 0.9234 1.7802 7 6 5.7518 0.1160 2.5343 8 8 5.2389 -0.7117 3.2571 9 6 7.2525 0.2419 2.4792 10 1 7.5444 1.2465 2.7853 11 6 7.7266 -0.0119 1.0714 12 1 7.2192 -0.7377 0.4534 13 6 8.8083 0.6826 0.5725 14 7 9.1617 0.5338 -0.6855 15 14 9.7715 1.8347 1.6833 16 1 10.7904 1.0597 2.4361 17 1 10.4462 2.8687 0.8582 18 1 8.8438 2.4917 2.6389 19 6 7.8757 -0.7670 3.4092 20 6 7.7336 -2.1188 3.1579 21 6 8.3085 -3.0442 4.0089 22 6 9.0186 -2.6178 5.1156 23 6 9.1563 -1.2660 5.3698 24 6 8.5846 -0.3407 4.5167 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.6787 2.1187 -0.7446 31 1 3.1646 2.8531 0.9816 32 1 3.2294 -0.2041 1.5273 33 1 3.1776 0.9843 2.8513 34 1 5.3901 1.5852 1.2018 35 1 9.9224 1.0226 -1.0366 36 1 7.1756 -2.4520 2.2953 37 1 8.2007 -4.1004 3.8105 38 1 9.4655 -3.3409 5.7818 39 1 9.7107 -0.9329 6.2346 40 1 8.6919 0.7155 4.7155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583745479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:06 Heat of formation + Delta-G solvation = -22.912892 kcal Electronic energy + Delta-G solvation = -20562.516096 eV Core-core repulsion = 17534.360228 eV Total energy + Delta-G solvation = -3028.155868 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.99002 -39.49822 -37.68260 -35.53141 -34.91516 -33.34269 -31.62842 -31.60181 -29.54607 -27.04252 -25.22515 -24.15210 -23.37558 -22.52880 -21.01108 -19.59728 -19.11402 -17.79105 -17.65552 -17.18282 -16.54590 -16.27009 -15.80594 -15.59023 -15.20054 -14.92115 -14.79854 -14.66603 -14.23679 -14.14535 -13.83931 -13.47342 -13.39950 -12.99584 -12.94418 -12.84115 -12.71389 -12.03268 -11.96513 -11.89809 -11.63219 -11.46435 -11.40133 -10.91993 -10.61934 -10.16016 -9.74146 -9.64361 -9.36790 -8.34653 -6.42679 0.64094 0.70358 1.13642 1.32470 1.40113 1.44164 1.87499 2.30026 2.64992 2.97049 3.17145 3.76791 4.07864 4.10245 4.19427 4.21927 4.29724 4.37512 4.39318 4.41475 4.48495 4.59294 4.68747 4.75027 4.82138 4.90177 4.96344 5.10343 5.19983 5.20120 5.32090 5.33986 5.39611 5.59012 5.67557 5.69998 5.74070 5.88957 5.94817 6.20459 6.30693 6.59527 6.71659 7.22286 7.45344 8.79937 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.005637 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.854794 B = 4965.714894 C = 6046.193746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C -0.127 4.127 4 C -0.186 4.186 5 C 0.141 3.859 6 N -0.715 5.715 7 C 0.529 3.471 8 O -0.588 6.588 9 C 0.021 3.979 10 H 0.080 0.920 11 C -0.499 4.499 12 H 0.036 0.964 13 C 0.037 3.963 14 N -0.930 5.930 15 Si 0.923 3.077 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.234 1.234 19 C -0.056 4.056 20 C -0.104 4.104 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.125 4.125 24 C -0.154 4.154 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.410 0.590 35 H 0.270 0.730 36 H 0.088 0.912 37 H 0.134 0.866 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.885 2.610 6.061 11.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C -0.146 4.146 4 C -0.204 4.204 5 C 0.018 3.982 6 N -0.366 5.366 7 C 0.318 3.682 8 O -0.470 6.470 9 C 0.000 4.000 10 H 0.098 0.902 11 C -0.537 4.537 12 H 0.055 0.945 13 C -0.163 4.163 14 N -0.568 5.568 15 Si 0.747 3.253 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.158 1.158 19 C -0.057 4.057 20 C -0.123 4.123 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.142 4.142 24 C -0.172 4.172 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.245 0.755 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.152 0.848 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.151 2.088 6.414 11.368 hybrid contribution 0.773 0.610 -0.562 1.134 sum -8.378 2.698 5.852 10.570 Atomic orbital electron populations 1.21650 0.93277 1.02257 1.02474 1.20938 0.97621 0.94694 1.02434 1.23105 0.96981 0.97756 0.96718 1.22810 1.00027 0.99504 0.98087 1.20478 0.79525 0.98903 0.99298 1.45863 1.06408 1.38959 1.45390 1.21043 0.90210 0.79366 0.77600 1.90555 1.76423 1.37496 1.42489 1.18508 0.89120 0.96889 0.95481 0.90194 1.20430 1.15139 1.23494 0.94647 0.94539 1.25697 0.97166 0.97715 0.95758 1.69992 1.28033 1.43623 1.15159 0.86099 0.80087 0.79355 0.79795 1.19341 1.20784 1.15782 1.20104 0.96665 0.95013 0.93928 1.20824 0.99210 0.93535 0.98693 1.21358 0.98512 0.99676 0.95576 1.21351 0.99986 0.96305 0.97817 1.21370 0.99833 0.93291 0.99736 1.21250 1.00447 1.00247 0.95220 0.92450 0.91512 0.92081 0.91264 0.91916 0.84643 0.85121 0.91804 0.91862 0.75481 0.92037 0.89391 0.84775 0.83160 0.83335 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.89 71.98 0.71 -1.67 16 2 C -0.12 -2.66 6.02 29.85 0.18 -2.48 16 3 C -0.13 -2.77 9.51 25.65 0.24 -2.52 16 4 C -0.19 -4.59 9.63 25.64 0.25 -4.35 16 5 C 0.14 4.47 5.76 85.63 0.49 4.97 16 6 N -0.72 -27.22 5.45 -466.80 -2.54 -29.76 16 7 C 0.53 24.01 7.04 87.65 0.62 24.62 16 8 O -0.59 -29.16 15.37 -3.01 -0.05 -29.20 16 9 C 0.02 1.00 1.89 -13.03 -0.02 0.98 16 10 H 0.08 3.54 4.89 -2.39 -0.01 3.53 16 11 C -0.50 -26.84 8.06 25.60 0.21 -26.63 16 12 H 0.04 2.24 8.06 -2.92 -0.02 2.21 16 13 C 0.04 2.00 5.47 84.66 0.46 2.46 16 14 N -0.93 -54.32 13.96 21.45 0.30 -54.02 16 15 Si 0.92 40.80 27.18 68.60 1.86 42.66 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.23 -9.21 6.06 99.48 0.60 -8.61 16 19 C -0.06 -2.56 4.09 -19.87 -0.08 -2.64 16 20 C -0.10 -4.73 8.26 22.27 0.18 -4.55 16 21 C -0.13 -4.94 10.05 22.27 0.22 -4.72 16 22 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 23 C -0.12 -4.10 10.05 22.27 0.22 -3.88 16 24 C -0.15 -6.04 9.46 22.27 0.21 -5.83 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.06 1.60 5.30 -2.39 -0.01 1.59 16 30 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.06 2.18 5.30 -2.39 -0.01 2.17 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.41 14.83 8.35 -92.71 -0.77 14.05 16 35 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.09 4.34 7.93 -2.91 -0.02 4.32 16 37 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 39 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 40 H 0.12 4.31 7.95 -2.91 -0.02 4.29 16 Total: -1.00 -66.90 334.53 3.85 -63.05 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: 0.15 Total: 37.64 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 4.12 Total: -30.38 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -2.24 Total: -83.78 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.05 Total: -29.20 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.86 Total: 42.66 kcal Total: -66.90 3.85 -63.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583745479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.136 kcal (2) G-P(sol) polarization free energy of solvation -66.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds