Wall clock time and date at job start Mon Mar 30 2020 01:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50704 * 109.47271 * 2 1 4 4 C 1.31000 * 120.00245 * 124.99509 * 3 2 1 5 5 C 1.50697 * 119.99795 * 179.97438 * 4 3 2 6 6 N 1.46508 * 109.47078 * 125.00593 * 5 4 3 7 7 C 1.34768 * 120.00099 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00474 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99979 * 179.97438 * 7 6 5 10 10 H 1.08998 * 109.46844 * 299.99864 * 9 7 6 11 11 C 1.50697 * 109.47118 * 59.99912 * 9 7 6 12 12 H 1.07995 * 120.00122 * 33.08341 * 11 9 7 13 13 C 1.37876 * 119.99793 * 213.08654 * 11 9 7 14 14 N 1.31515 * 119.99869 * 188.38328 * 13 11 9 15 15 Si 1.86803 * 120.00361 * 8.37939 * 13 11 9 16 16 H 1.48498 * 109.46926 * 275.31598 * 15 13 11 17 17 H 1.48502 * 109.46936 * 35.31380 * 15 13 11 18 18 H 1.48497 * 109.47369 * 155.31295 * 15 13 11 19 19 C 1.50704 * 109.47213 * 180.02562 * 9 7 6 20 20 C 1.38233 * 119.99760 * 293.81750 * 19 9 7 21 21 C 1.38236 * 119.99821 * 179.78368 * 20 19 9 22 22 C 1.38236 * 119.99998 * 0.44870 * 21 20 19 23 23 C 1.38232 * 119.99819 * 359.80888 * 22 21 20 24 24 C 1.38233 * 120.00233 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47134 * 60.00305 * 1 2 3 26 26 H 1.09003 * 109.47214 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47394 * 300.00078 * 1 2 3 28 28 H 1.08996 * 109.47516 * 240.00144 * 2 1 3 29 29 H 1.09001 * 109.47134 * 119.99695 * 2 1 3 30 30 H 1.08003 * 119.99767 * 305.00048 * 3 2 1 31 31 H 1.07997 * 120.00210 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.47543 * 5.00435 * 5 4 3 33 33 H 1.08998 * 109.47177 * 245.00162 * 5 4 3 34 34 H 0.96999 * 119.99679 * 359.97438 * 6 5 4 35 35 H 0.97000 * 120.00257 * 180.02562 * 14 13 11 36 36 H 1.08002 * 120.00182 * 0.02562 * 20 19 9 37 37 H 1.07996 * 120.00135 * 180.27649 * 21 20 19 38 38 H 1.08001 * 120.00230 * 179.82899 * 22 21 20 39 39 H 1.08000 * 119.99778 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.00229 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8641 1.8215 0.9294 5 6 3.3668 3.2422 0.9289 6 7 3.0842 3.8606 2.2267 7 6 3.4473 5.1377 2.4579 8 8 4.0075 5.7753 1.5916 9 6 3.1561 5.7740 3.7926 10 1 2.0807 5.7696 3.9702 11 6 3.8483 4.9958 4.8818 12 1 4.7971 4.5188 4.6852 13 6 3.2703 4.8927 6.1293 14 7 3.9441 4.3581 7.1241 15 14 1.5300 5.5124 6.4065 16 1 1.5629 6.9694 6.6916 17 1 0.7165 5.2645 5.1891 18 1 0.9270 4.7959 7.5590 19 6 3.6590 7.1946 3.7923 20 6 5.0157 7.4475 3.7132 21 6 5.4766 8.7507 3.7084 22 6 4.5815 9.8008 3.7920 23 6 3.2252 9.5478 3.8765 24 6 2.7639 8.2447 3.8768 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.7065 2.1088 -0.7662 31 1 3.1901 1.1336 1.6953 32 1 2.8654 3.8049 0.1414 33 1 4.4421 3.2470 0.7507 34 1 2.6358 3.3508 2.9194 35 1 3.5374 4.2852 8.0017 36 1 5.7152 6.6270 3.6512 37 1 6.5363 8.9485 3.6421 38 1 4.9418 10.8190 3.7911 39 1 2.5258 10.3682 3.9414 40 1 1.7042 8.0469 3.9423 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583745480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:10 Heat of formation + Delta-G solvation = -31.399798 kcal Electronic energy + Delta-G solvation = -20357.112166 eV Core-core repulsion = 17328.588278 eV Total energy + Delta-G solvation = -3028.523887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.97946 -39.47086 -37.36221 -35.53610 -35.15013 -33.35285 -31.82200 -31.62420 -29.53177 -27.08319 -25.30359 -23.40766 -23.22423 -22.36488 -21.22037 -20.35909 -19.11712 -17.97667 -17.70112 -16.90746 -16.43403 -16.09269 -15.82319 -15.64119 -15.19721 -14.97583 -14.78553 -14.31411 -14.21602 -14.10403 -13.91004 -13.63924 -13.43425 -12.96217 -12.87335 -12.76673 -12.71841 -12.02363 -11.99897 -11.86180 -11.77337 -11.61042 -11.42592 -10.90122 -10.66506 -10.17898 -9.82948 -9.63930 -9.36754 -8.35211 -6.42873 0.64439 0.70812 1.14055 1.34075 1.38257 1.43886 1.85397 2.30409 2.63624 2.95095 3.17903 3.74238 4.06484 4.10017 4.21262 4.27054 4.32648 4.34843 4.39303 4.49256 4.53633 4.56369 4.59559 4.74707 4.82297 4.90244 4.96694 5.09464 5.17963 5.19916 5.32147 5.38167 5.40626 5.57406 5.69913 5.71507 5.74014 5.86120 5.95022 6.20013 6.30854 6.59205 6.70052 7.22065 7.43799 8.79564 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.005256 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.915520 B = 5326.135601 C = 6296.630362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.125 4.125 4 C -0.185 4.185 5 C 0.152 3.848 6 N -0.717 5.717 7 C 0.529 3.471 8 O -0.588 6.588 9 C 0.025 3.975 10 H 0.077 0.923 11 C -0.503 4.503 12 H 0.037 0.963 13 C 0.037 3.963 14 N -0.929 5.929 15 Si 0.922 3.078 16 H -0.265 1.265 17 H -0.236 1.236 18 H -0.282 1.282 19 C -0.056 4.056 20 C -0.104 4.104 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.125 4.125 24 C -0.152 4.152 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.410 0.590 35 H 0.270 0.730 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 -1.538 -10.656 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 C -0.144 4.144 4 C -0.203 4.203 5 C 0.029 3.971 6 N -0.368 5.368 7 C 0.317 3.683 8 O -0.469 6.469 9 C 0.004 3.996 10 H 0.094 0.906 11 C -0.540 4.540 12 H 0.055 0.945 13 C -0.163 4.163 14 N -0.567 5.567 15 Si 0.745 3.255 16 H -0.190 1.190 17 H -0.160 1.160 18 H -0.208 1.208 19 C -0.057 4.057 20 C -0.122 4.122 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.171 4.171 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.152 0.848 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.982 -1.176 -11.085 13.153 hybrid contribution -0.284 -0.366 0.954 1.061 sum -7.266 -1.542 -10.131 12.562 Atomic orbital electron populations 1.21711 0.94425 1.02395 1.01982 1.20714 0.96690 0.92926 1.03144 1.23146 0.95062 0.98418 0.97783 1.22788 1.00886 0.95246 1.01373 1.20303 0.99935 0.91623 0.85249 1.45894 1.61255 1.12889 1.16744 1.21059 0.76539 0.81800 0.88875 1.90560 1.44278 1.64067 1.48025 1.18430 0.98905 0.90798 0.91491 0.90559 1.20432 1.06485 1.32418 0.94674 0.94473 1.25721 1.01556 0.94101 0.94960 1.70012 1.38985 1.45698 1.01991 0.86069 0.80734 0.79565 0.79107 1.18959 1.15974 1.20768 1.20105 0.94185 0.95304 0.96110 1.20823 0.95331 0.96680 0.99405 1.21357 1.00656 0.92326 1.00892 1.21349 0.93173 0.99557 1.01369 1.21366 0.96539 0.96208 1.00139 1.21252 0.99289 0.93377 1.03133 0.92116 0.91367 0.93379 0.89621 0.91428 0.86545 0.86422 0.91683 0.92645 0.75449 0.92041 0.89438 0.84820 0.83159 0.83317 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.89 71.98 0.71 -1.46 16 2 C -0.10 -1.57 6.38 29.85 0.19 -1.38 16 3 C -0.13 -2.52 9.12 25.65 0.23 -2.29 16 4 C -0.18 -4.53 9.24 25.65 0.24 -4.30 16 5 C 0.15 4.77 6.11 85.63 0.52 5.29 16 6 N -0.72 -27.08 5.45 -466.78 -2.54 -29.62 16 7 C 0.53 23.97 7.04 87.66 0.62 24.59 16 8 O -0.59 -29.21 15.42 -3.04 -0.05 -29.26 16 9 C 0.03 1.18 1.98 -13.03 -0.03 1.15 16 10 H 0.08 3.38 4.81 -2.39 -0.01 3.37 16 11 C -0.50 -27.03 8.00 25.60 0.20 -26.83 16 12 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 13 C 0.04 2.01 5.47 84.65 0.46 2.47 16 14 N -0.93 -54.51 13.96 21.45 0.30 -54.21 16 15 Si 0.92 40.52 27.31 68.60 1.87 42.40 16 16 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.24 -9.25 6.41 99.48 0.64 -8.62 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 19 C -0.06 -2.58 4.30 -19.87 -0.09 -2.67 16 20 C -0.10 -4.79 8.32 22.27 0.19 -4.61 16 21 C -0.13 -5.07 10.05 22.27 0.22 -4.85 16 22 C -0.14 -4.44 10.05 22.27 0.22 -4.21 16 23 C -0.12 -4.16 10.05 22.27 0.22 -3.93 16 24 C -0.15 -6.05 9.67 22.27 0.22 -5.84 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.11 7.79 -2.39 -0.02 1.09 16 30 H 0.12 2.19 7.84 -2.91 -0.02 2.17 16 31 H 0.12 2.84 7.84 -2.91 -0.02 2.81 16 32 H 0.06 2.00 7.79 -2.39 -0.02 1.98 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.41 14.67 8.35 -92.71 -0.77 13.90 16 35 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.09 4.39 7.89 -2.91 -0.02 4.37 16 37 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 38 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 39 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 40 H 0.12 4.35 7.95 -2.91 -0.02 4.33 16 Total: -1.00 -67.11 339.94 3.90 -63.21 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: 0.18 Total: 36.32 kcal Atomic # 6 Polarization: -32.98 SS G_CDS: 4.14 Total: -28.84 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -2.24 Total: -83.83 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.05 Total: -29.26 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.87 Total: 42.40 kcal Total: -67.11 3.90 -63.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583745480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.812 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds