Wall clock time and date at job start Mon Mar 30 2020 01:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47406 * 2 1 4 4 C 1.30997 * 120.00309 * 125.00033 * 3 2 1 5 5 C 1.50696 * 120.00309 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47258 * 124.99997 * 5 4 3 7 7 C 1.34777 * 120.00066 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99987 * 359.97438 * 7 6 5 9 9 C 1.50691 * 120.00237 * 180.02562 * 7 6 5 10 10 H 1.09002 * 109.47502 * 59.99741 * 9 7 6 11 11 C 1.50703 * 109.47089 * 300.00071 * 9 7 6 12 12 H 1.08001 * 119.99695 * 325.09683 * 11 9 7 13 13 C 1.37878 * 120.00092 * 145.09568 * 11 9 7 14 14 N 1.31512 * 119.99890 * 184.98420 * 13 11 9 15 15 Si 1.86800 * 120.00076 * 4.98609 * 13 11 9 16 16 H 1.48501 * 109.47174 * 84.66495 * 15 13 11 17 17 H 1.48498 * 109.46748 * 204.66821 * 15 13 11 18 18 H 1.48498 * 109.46658 * 324.66664 * 15 13 11 19 19 C 1.50696 * 109.47429 * 179.97438 * 9 7 6 20 20 C 1.38237 * 119.99972 * 65.02257 * 19 9 7 21 21 C 1.38235 * 119.99921 * 179.81077 * 20 19 9 22 22 C 1.38236 * 120.00103 * 0.39634 * 21 20 19 23 23 C 1.38236 * 119.99862 * 359.85500 * 22 21 20 24 24 C 1.38232 * 120.00157 * 245.29493 * 19 9 7 25 25 H 1.08995 * 109.47431 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47038 * 300.00550 * 1 2 3 27 27 H 1.09000 * 109.46897 * 60.00025 * 1 2 3 28 28 H 1.08999 * 109.46794 * 239.99940 * 2 1 3 29 29 H 1.09000 * 109.46897 * 119.99975 * 2 1 3 30 30 H 1.08002 * 119.99556 * 304.99800 * 3 2 1 31 31 H 1.08002 * 119.99676 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.46957 * 4.99531 * 5 4 3 33 33 H 1.09005 * 109.47140 * 245.00020 * 5 4 3 34 34 H 0.96992 * 120.00009 * 359.97438 * 6 5 4 35 35 H 0.97002 * 120.00277 * 180.02562 * 14 13 11 36 36 H 1.08000 * 120.00328 * 359.97438 * 20 19 9 37 37 H 1.08007 * 119.99552 * 180.22502 * 21 20 19 38 38 H 1.07995 * 119.99756 * 179.83432 * 22 21 20 39 39 H 1.07992 * 119.99997 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.99894 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8642 1.8214 0.9293 5 6 3.3662 3.2423 0.9296 6 7 3.0836 3.8598 2.2277 7 6 3.4451 5.1373 2.4593 8 8 4.0048 5.7757 1.5931 9 6 3.1550 5.7723 3.7947 10 1 3.6576 5.2097 4.5815 11 6 1.6685 5.7639 4.0426 12 1 0.9829 5.8948 3.2184 13 6 1.1838 5.5892 5.3215 14 7 -0.1112 5.4837 5.5252 15 14 2.3665 5.5023 6.7648 16 1 2.6921 6.8774 7.2214 17 1 1.7352 4.7477 7.8771 18 1 3.6122 4.8128 6.3431 19 6 3.6568 7.1933 3.7950 20 6 3.0880 8.1273 2.9495 21 6 3.5457 9.4317 2.9526 22 6 4.5777 9.8001 3.7953 23 6 5.1500 8.8648 4.6370 24 6 4.6897 7.5613 4.6367 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7066 2.1087 -0.7662 31 1 3.1903 1.1333 1.6952 32 1 2.8643 3.8051 0.1425 33 1 4.4415 3.2479 0.7510 34 1 2.6357 3.3494 2.9203 35 1 -0.4522 5.3611 6.4249 36 1 2.2842 7.8387 2.2884 37 1 3.0988 10.1623 2.2946 38 1 4.9371 10.8185 3.7957 39 1 5.9566 9.1525 5.2950 40 1 5.1368 6.8306 5.2944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583745481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:14 Heat of formation + Delta-G solvation = -13.838568 kcal Electronic energy + Delta-G solvation = -20395.402247 eV Core-core repulsion = 17367.639871 eV Total energy + Delta-G solvation = -3027.762375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.30848 -37.93210 -36.23680 -33.84697 -33.61668 -31.51039 -30.69969 -30.10795 -27.89702 -25.76386 -23.51528 -22.25009 -21.81945 -20.85815 -19.90672 -18.99689 -17.12841 -16.41644 -16.05492 -15.47046 -14.89293 -14.58320 -14.53849 -14.22268 -13.74163 -13.70411 -13.25566 -12.86364 -12.71449 -12.62963 -12.46100 -12.12379 -11.93783 -11.85903 -11.64645 -11.13236 -11.08202 -10.98644 -10.81724 -10.44846 -10.21929 -9.90704 -9.52253 -9.26837 -8.92532 -8.63555 -8.33999 -8.11034 -7.78484 -6.29670 -4.33556 2.13146 2.19588 2.26069 3.15436 3.23406 3.28045 3.62932 4.12812 4.22678 4.66956 4.75767 4.97836 5.01924 5.24029 5.29965 5.40481 5.57323 5.62069 5.63497 5.74071 5.82854 5.84845 5.91950 5.98038 5.98261 6.15826 6.21236 6.32486 6.35266 6.49062 6.67514 6.77005 6.80665 6.87877 7.16044 7.19544 7.27769 7.30572 7.61750 7.82473 8.21437 8.33978 8.70925 9.14729 9.28430 10.81346 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.005316 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.145001 B = 5266.303153 C = 6301.619844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.143 4.143 4 C -0.169 4.169 5 C 0.151 3.849 6 N -0.725 5.725 7 C 0.535 3.465 8 O -0.564 6.564 9 C 0.018 3.982 10 H 0.073 0.927 11 C -0.509 4.509 12 H 0.082 0.918 13 C 0.085 3.915 14 N -0.883 5.883 15 Si 0.866 3.134 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.262 1.262 19 C -0.027 4.027 20 C -0.073 4.073 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.129 4.129 24 C -0.137 4.137 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.407 0.593 35 H 0.269 0.731 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.271 -5.887 -5.555 9.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.162 4.162 4 C -0.187 4.187 5 C 0.027 3.973 6 N -0.377 5.377 7 C 0.323 3.677 8 O -0.443 6.443 9 C -0.003 4.003 10 H 0.091 0.909 11 C -0.547 4.547 12 H 0.100 0.900 13 C -0.120 4.120 14 N -0.519 5.519 15 Si 0.693 3.307 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.187 1.187 19 C -0.028 4.028 20 C -0.091 4.091 21 C -0.147 4.147 22 C -0.162 4.162 23 C -0.147 4.147 24 C -0.156 4.156 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.241 0.759 35 H 0.079 0.921 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.504 -5.459 -6.029 9.821 hybrid contribution 0.200 -0.223 1.243 1.279 sum 5.704 -5.682 -4.786 9.366 Atomic orbital electron populations 1.21720 0.95008 1.01491 1.02472 1.20643 0.96314 0.94182 1.02109 1.22914 0.96799 0.97350 0.99184 1.22952 0.99324 0.96768 0.99681 1.20201 1.00018 0.89933 0.87142 1.45872 1.62258 1.13929 1.15654 1.21133 0.75559 0.80541 0.90429 1.90591 1.43274 1.62589 1.47806 1.18582 0.99419 0.90005 0.92328 0.90938 1.20533 0.86998 1.51619 0.95519 0.90008 1.24979 0.95013 0.93569 0.98424 1.69864 1.12145 1.47600 1.22282 0.87016 0.81542 0.79510 0.82616 1.19146 1.21143 1.18702 1.20076 0.92157 0.96988 0.93535 1.20842 0.98492 0.92123 0.97630 1.21034 0.97748 0.96374 0.99591 1.20857 0.98347 0.98631 0.98350 1.20879 1.00346 0.93694 0.99765 1.20974 0.97737 0.96221 1.00637 0.92744 0.92147 0.92637 0.91332 0.91583 0.87154 0.86922 0.91843 0.91568 0.75850 0.92139 0.86546 0.87129 0.87335 0.87275 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.90 37.16 0.37 -1.07 16 2 C -0.10 -0.92 6.38 -27.88 -0.18 -1.10 16 3 C -0.14 -1.66 9.12 -36.03 -0.33 -1.99 16 4 C -0.17 -2.14 9.24 -36.03 -0.33 -2.47 16 5 C 0.15 2.35 6.11 -5.20 -0.03 2.32 16 6 N -0.72 -13.46 5.45 -61.47 -0.33 -13.79 16 7 C 0.53 11.78 7.04 -10.99 -0.08 11.71 16 8 O -0.56 -13.56 15.37 5.55 0.09 -13.48 16 9 C 0.02 0.42 1.89 -94.08 -0.18 0.24 16 10 H 0.07 1.63 4.89 -51.93 -0.25 1.38 16 11 C -0.51 -13.14 8.07 -34.44 -0.28 -13.42 16 12 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 13 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 14 N -0.88 -24.97 13.96 55.43 0.77 -24.20 16 15 Si 0.87 19.99 27.18 -169.99 -4.62 15.37 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.26 -5.62 6.06 56.52 0.34 -5.27 16 19 C -0.03 -0.60 4.09 -104.63 -0.43 -1.03 16 20 C -0.07 -1.61 8.25 -39.58 -0.33 -1.94 16 21 C -0.13 -2.49 10.05 -39.58 -0.40 -2.88 16 22 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 23 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 24 C -0.14 -2.85 9.46 -39.58 -0.37 -3.22 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.62 7.79 -51.93 -0.40 0.21 16 30 H 0.11 1.27 7.84 -52.49 -0.41 0.86 16 31 H 0.11 1.30 7.84 -52.49 -0.41 0.89 16 32 H 0.06 1.04 7.79 -51.93 -0.40 0.63 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.41 7.23 8.35 -40.82 -0.34 6.89 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.12 2.67 7.93 -52.49 -0.42 2.26 16 37 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.11 2.06 7.95 -52.49 -0.42 1.64 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -29.83 339.01 -8.50 -38.33 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -6.06 Total: 11.09 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -3.46 Total: -18.43 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.44 Total: -37.99 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.62 Total: 15.37 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.83 -8.50 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583745481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.495 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds