Wall clock time and date at job start Mon Mar 30 2020 01:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47406 * 2 1 4 4 C 1.30997 * 120.00309 * 125.00033 * 3 2 1 5 5 C 1.50696 * 120.00309 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47258 * 124.99997 * 5 4 3 7 7 C 1.34777 * 120.00066 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99987 * 359.97438 * 7 6 5 9 9 C 1.50691 * 120.00237 * 180.02562 * 7 6 5 10 10 H 1.09002 * 109.47502 * 59.99741 * 9 7 6 11 11 C 1.50703 * 109.47089 * 300.00071 * 9 7 6 12 12 H 1.08001 * 119.99695 * 325.09683 * 11 9 7 13 13 C 1.37878 * 120.00092 * 145.09568 * 11 9 7 14 14 N 1.31512 * 119.99890 * 184.98420 * 13 11 9 15 15 Si 1.86800 * 120.00076 * 4.98609 * 13 11 9 16 16 H 1.48501 * 109.47174 * 84.66495 * 15 13 11 17 17 H 1.48498 * 109.46748 * 204.66821 * 15 13 11 18 18 H 1.48498 * 109.46658 * 324.66664 * 15 13 11 19 19 C 1.50696 * 109.47429 * 179.97438 * 9 7 6 20 20 C 1.38237 * 119.99972 * 65.02257 * 19 9 7 21 21 C 1.38235 * 119.99921 * 179.81077 * 20 19 9 22 22 C 1.38236 * 120.00103 * 0.39634 * 21 20 19 23 23 C 1.38236 * 119.99862 * 359.85500 * 22 21 20 24 24 C 1.38232 * 120.00157 * 245.29493 * 19 9 7 25 25 H 1.08995 * 109.47431 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47038 * 300.00550 * 1 2 3 27 27 H 1.09000 * 109.46897 * 60.00025 * 1 2 3 28 28 H 1.08999 * 109.46794 * 239.99940 * 2 1 3 29 29 H 1.09000 * 109.46897 * 119.99975 * 2 1 3 30 30 H 1.08002 * 119.99556 * 304.99800 * 3 2 1 31 31 H 1.08002 * 119.99676 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.46957 * 4.99531 * 5 4 3 33 33 H 1.09005 * 109.47140 * 245.00020 * 5 4 3 34 34 H 0.96992 * 120.00009 * 359.97438 * 6 5 4 35 35 H 0.97002 * 120.00277 * 180.02562 * 14 13 11 36 36 H 1.08000 * 120.00328 * 359.97438 * 20 19 9 37 37 H 1.08007 * 119.99552 * 180.22502 * 21 20 19 38 38 H 1.07995 * 119.99756 * 179.83432 * 22 21 20 39 39 H 1.07992 * 119.99997 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.99894 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8642 1.8214 0.9293 5 6 3.3662 3.2423 0.9296 6 7 3.0836 3.8598 2.2277 7 6 3.4451 5.1373 2.4593 8 8 4.0048 5.7757 1.5931 9 6 3.1550 5.7723 3.7947 10 1 3.6576 5.2097 4.5815 11 6 1.6685 5.7639 4.0426 12 1 0.9829 5.8948 3.2184 13 6 1.1838 5.5892 5.3215 14 7 -0.1112 5.4837 5.5252 15 14 2.3665 5.5023 6.7648 16 1 2.6921 6.8774 7.2214 17 1 1.7352 4.7477 7.8771 18 1 3.6122 4.8128 6.3431 19 6 3.6568 7.1933 3.7950 20 6 3.0880 8.1273 2.9495 21 6 3.5457 9.4317 2.9526 22 6 4.5777 9.8001 3.7953 23 6 5.1500 8.8648 4.6370 24 6 4.6897 7.5613 4.6367 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7066 2.1087 -0.7662 31 1 3.1903 1.1333 1.6952 32 1 2.8643 3.8051 0.1425 33 1 4.4415 3.2479 0.7510 34 1 2.6357 3.3494 2.9203 35 1 -0.4522 5.3611 6.4249 36 1 2.2842 7.8387 2.2884 37 1 3.0988 10.1623 2.2946 38 1 4.9371 10.8185 3.7957 39 1 5.9566 9.1525 5.2950 40 1 5.1368 6.8306 5.2944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583745481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:13 Heat of formation + Delta-G solvation = -30.841947 kcal Electronic energy + Delta-G solvation = -20396.139568 eV Core-core repulsion = 17367.639871 eV Total energy + Delta-G solvation = -3028.499697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.98102 -39.47171 -37.35569 -35.53613 -35.14909 -33.35948 -31.82082 -31.62992 -29.52232 -27.08999 -25.30265 -23.42132 -23.22554 -22.36277 -21.22198 -20.36467 -19.11449 -17.99267 -17.68661 -16.90843 -16.45072 -16.10325 -15.73990 -15.68316 -15.18229 -15.04475 -14.74718 -14.31369 -14.21456 -14.14269 -13.87952 -13.65580 -13.44777 -12.97847 -12.88405 -12.73572 -12.71449 -12.03440 -11.97583 -11.87003 -11.77615 -11.61724 -11.41085 -10.92697 -10.64123 -10.17362 -9.81394 -9.64626 -9.36933 -8.34981 -6.43101 0.63872 0.70124 1.14557 1.32158 1.39841 1.43919 1.86677 2.29704 2.63687 2.96634 3.16749 3.74599 4.07181 4.09467 4.21570 4.27096 4.33036 4.35622 4.39104 4.48048 4.53285 4.55765 4.60695 4.74601 4.81974 4.90108 4.96630 5.07766 5.16348 5.19782 5.31833 5.37857 5.39232 5.58583 5.69567 5.70656 5.73724 5.86811 5.94487 6.20071 6.30429 6.59081 6.70696 7.21858 7.44471 8.79584 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.005316 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.145001 B = 5266.303153 C = 6301.619844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.133 4.133 4 C -0.181 4.181 5 C 0.151 3.849 6 N -0.716 5.716 7 C 0.529 3.471 8 O -0.589 6.589 9 C 0.021 3.979 10 H 0.081 0.919 11 C -0.500 4.500 12 H 0.036 0.964 13 C 0.037 3.963 14 N -0.930 5.930 15 Si 0.923 3.077 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.234 1.234 19 C -0.056 4.056 20 C -0.104 4.104 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.125 4.125 24 C -0.153 4.153 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.410 0.590 35 H 0.270 0.730 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.460 -5.954 -4.754 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.152 4.152 4 C -0.199 4.199 5 C 0.028 3.972 6 N -0.367 5.367 7 C 0.318 3.682 8 O -0.470 6.470 9 C 0.000 4.000 10 H 0.098 0.902 11 C -0.538 4.538 12 H 0.054 0.946 13 C -0.164 4.164 14 N -0.568 5.568 15 Si 0.746 3.254 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.157 1.157 19 C -0.057 4.057 20 C -0.123 4.123 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.142 4.142 24 C -0.172 4.172 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.246 0.754 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.152 0.848 38 H 0.169 0.831 39 H 0.167 0.833 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.699 -5.558 -5.248 10.850 hybrid contribution -0.523 -0.145 0.850 1.009 sum 7.176 -5.703 -4.398 10.167 Atomic orbital electron populations 1.21727 0.94965 1.02385 1.01688 1.20688 0.96222 0.92776 1.03387 1.23155 0.95287 0.98538 0.98204 1.22825 1.00756 0.95194 1.01148 1.20305 1.00251 0.91474 0.85133 1.45889 1.60992 1.12980 1.16874 1.21057 0.75702 0.81468 0.90017 1.90560 1.44716 1.63424 1.48283 1.18507 0.97238 0.91213 0.93039 0.90154 1.20433 0.88203 1.50867 0.94249 0.94567 1.25704 0.96424 0.93233 1.01019 1.69993 1.14222 1.49586 1.22993 0.86100 0.80545 0.79610 0.79106 1.19316 1.20769 1.15733 1.20102 0.94006 0.96408 0.95193 1.20822 0.98998 0.94050 0.98418 1.21361 0.98135 0.95448 1.00207 1.21352 0.96861 1.00568 0.96666 1.21373 1.00603 0.92577 0.99673 1.21252 0.97427 0.97991 1.00487 0.91053 0.93894 0.92487 0.89421 0.90894 0.87430 0.85369 0.93137 0.91290 0.75443 0.92029 0.89425 0.84779 0.83150 0.83308 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.90 71.98 0.71 -1.98 16 2 C -0.09 -1.64 6.38 29.85 0.19 -1.45 16 3 C -0.13 -2.96 9.12 25.65 0.23 -2.73 16 4 C -0.18 -4.48 9.24 25.65 0.24 -4.24 16 5 C 0.15 4.79 6.11 85.63 0.52 5.32 16 6 N -0.72 -27.24 5.45 -466.79 -2.54 -29.78 16 7 C 0.53 24.02 7.04 87.65 0.62 24.64 16 8 O -0.59 -29.22 15.37 -3.04 -0.05 -29.27 16 9 C 0.02 1.00 1.89 -13.04 -0.02 0.98 16 10 H 0.08 3.56 4.89 -2.39 -0.01 3.54 16 11 C -0.50 -26.91 8.07 25.60 0.21 -26.71 16 12 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 13 C 0.04 1.98 5.47 84.66 0.46 2.44 16 14 N -0.93 -54.38 13.96 21.45 0.30 -54.08 16 15 Si 0.92 40.80 27.18 68.60 1.86 42.67 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.23 -9.18 6.06 99.48 0.60 -8.58 16 19 C -0.06 -2.56 4.09 -19.87 -0.08 -2.64 16 20 C -0.10 -4.76 8.25 22.27 0.18 -4.57 16 21 C -0.13 -4.97 10.05 22.27 0.22 -4.74 16 22 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 23 C -0.12 -4.10 10.05 22.27 0.22 -3.88 16 24 C -0.15 -6.04 9.46 22.27 0.21 -5.83 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.20 7.79 -2.39 -0.02 1.19 16 30 H 0.11 2.44 7.84 -2.91 -0.02 2.42 16 31 H 0.13 2.78 7.84 -2.91 -0.02 2.76 16 32 H 0.05 1.72 7.79 -2.39 -0.02 1.70 16 33 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.41 14.86 8.35 -92.71 -0.77 14.09 16 35 H 0.27 14.82 8.31 -92.71 -0.77 14.04 16 36 H 0.09 4.34 7.93 -2.91 -0.02 4.32 16 37 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 40 H 0.12 4.32 7.95 -2.91 -0.02 4.30 16 Total: -1.00 -67.00 339.01 3.86 -63.15 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: 0.14 Total: 36.85 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 4.14 Total: -29.54 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -2.24 Total: -83.86 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.05 Total: -29.27 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.86 Total: 42.67 kcal Total: -67.00 3.86 -63.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583745481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.304 kcal (2) G-P(sol) polarization free energy of solvation -67.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds