Wall clock time and date at job start Mon Mar 30 2020 01:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00295 * 2 1 4 4 C 1.52996 * 109.47378 * 94.99653 * 3 2 1 5 5 C 1.50702 * 120.00128 * 179.97438 * 2 1 3 6 6 N 1.46503 * 109.46987 * 95.00084 * 5 2 1 7 7 C 1.34779 * 120.00328 * 180.02562 * 6 5 2 8 8 O 1.21283 * 119.99419 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00080 * 180.02562 * 7 6 5 10 10 H 1.09001 * 109.47295 * 299.99387 * 9 7 6 11 11 C 1.50696 * 109.47530 * 59.99483 * 9 7 6 12 12 H 1.07997 * 120.00260 * 235.33651 * 11 9 7 13 13 C 1.37879 * 119.99977 * 55.33425 * 11 9 7 14 14 N 1.31516 * 119.99735 * 1.97120 * 13 11 9 15 15 Si 1.86800 * 120.00111 * 181.96775 * 13 11 9 16 16 H 1.48495 * 109.47133 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46977 * 120.00228 * 15 13 11 18 18 H 1.48496 * 109.47065 * 239.99944 * 15 13 11 19 19 C 1.50707 * 109.46942 * 179.97438 * 9 7 6 20 20 C 1.38224 * 120.00104 * 47.22099 * 19 9 7 21 21 C 1.38237 * 120.00255 * 180.02562 * 20 19 9 22 22 C 1.38238 * 119.99745 * 359.95072 * 21 20 19 23 23 C 1.38236 * 119.99912 * 0.02562 * 22 21 20 24 24 C 1.38232 * 119.99717 * 227.19961 * 19 9 7 25 25 H 1.07997 * 120.00119 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00049 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47216 * 215.00087 * 3 2 1 28 28 H 1.09005 * 109.47001 * 334.99906 * 3 2 1 29 29 H 1.09002 * 109.46994 * 180.02562 * 4 3 2 30 30 H 1.08996 * 109.47125 * 300.00207 * 4 3 2 31 31 H 1.09005 * 109.46847 * 60.00159 * 4 3 2 32 32 H 1.09000 * 109.46886 * 335.00520 * 5 2 1 33 33 H 1.09001 * 109.47758 * 214.99831 * 5 2 1 34 34 H 0.97004 * 120.00070 * 0.02562 * 6 5 2 35 35 H 0.97003 * 120.00319 * 179.97438 * 14 13 11 36 36 H 1.08000 * 120.00315 * 359.97438 * 20 19 9 37 37 H 1.07994 * 120.00683 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00281 * 179.72897 * 22 21 20 39 39 H 1.07996 * 120.00326 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00068 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.4273 1.6839 1.4370 5 6 2.0635 -1.3051 0.0006 6 7 2.4119 -1.6684 -1.3753 7 6 3.0926 -2.8056 -1.6202 8 8 3.4171 -3.5278 -0.7016 9 6 3.4515 -3.1789 -3.0354 10 1 2.5410 -3.2849 -3.6253 11 6 4.3162 -2.1005 -3.6356 12 1 4.0236 -1.6262 -4.5607 13 6 5.4809 -1.7193 -3.0038 14 7 5.8571 -2.3235 -1.8979 15 14 6.5245 -0.3447 -3.7185 16 1 5.8867 0.1678 -4.9577 17 1 6.6378 0.7566 -2.7286 18 1 7.8782 -0.8653 -4.0368 19 6 4.2050 -4.4841 -3.0349 20 6 3.7308 -5.5555 -2.3015 21 6 4.4222 -6.7526 -2.3006 22 6 5.5873 -6.8784 -3.0340 23 6 6.0612 -5.8070 -3.7678 24 6 5.3700 -4.6098 -3.7682 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.9742 1.1988 -0.5895 28 1 1.4386 2.0855 -0.4343 29 1 2.9720 2.6281 1.4369 30 1 1.5167 1.7902 2.0264 31 1 3.0523 0.9036 1.8713 32 1 1.4385 -2.0853 0.4352 33 1 2.9742 -1.1987 0.5899 34 1 2.1527 -1.0905 -2.1100 35 1 6.6766 -2.0557 -1.4534 36 1 2.8207 -5.4573 -1.7286 37 1 4.0521 -7.5896 -1.7273 38 1 6.1298 -7.8122 -3.0298 39 1 6.9716 -5.9051 -4.3404 40 1 5.7400 -3.7729 -4.3418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583839548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:20 Heat of formation + Delta-G solvation = -5.979104 kcal Electronic energy + Delta-G solvation = -21195.243834 eV Core-core repulsion = 18167.822271 eV Total energy + Delta-G solvation = -3027.421563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.95787 -37.62190 -36.31700 -33.57868 -32.82470 -30.79498 -30.19221 -29.63715 -27.52828 -25.49625 -23.69296 -23.38357 -21.23656 -20.50659 -19.17990 -18.31634 -16.74995 -15.91989 -15.21213 -15.14155 -14.88444 -14.70719 -14.35884 -13.84875 -13.61841 -13.32179 -12.93133 -12.73792 -12.38119 -12.27095 -12.12861 -11.93813 -11.84996 -11.36878 -11.20077 -10.98974 -10.76316 -10.71522 -10.54075 -10.41413 -10.01953 -9.64928 -9.37034 -9.14832 -8.68764 -8.22599 -7.93201 -7.65316 -7.36014 -6.11596 -4.27747 2.25846 2.59202 2.65058 3.19067 3.29748 3.31015 4.18648 4.33035 4.57864 4.92962 5.01006 5.07897 5.16450 5.37674 5.49921 5.68133 5.81569 5.88737 5.99953 6.01960 6.08052 6.10739 6.15140 6.16427 6.32943 6.43843 6.62801 6.71335 6.71822 6.84547 6.94345 7.01985 7.17046 7.25171 7.55961 7.60390 7.68210 7.71160 7.83035 8.20088 8.30933 8.65388 8.85634 9.38616 9.74456 10.88760 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.006684 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.375534 B = 4188.028402 C = 5350.045331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.125 4.125 3 C -0.092 4.092 4 C -0.145 4.145 5 C 0.161 3.839 6 N -0.731 5.731 7 C 0.550 3.450 8 O -0.549 6.549 9 C 0.056 3.944 10 H 0.056 0.944 11 C -0.539 4.539 12 H 0.067 0.933 13 C 0.074 3.926 14 N -0.841 5.841 15 Si 0.884 3.116 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.282 1.282 19 C -0.014 4.014 20 C -0.100 4.100 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.065 4.065 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.396 0.604 35 H 0.264 0.736 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.825 3.255 1.064 7.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.125 4.125 3 C -0.129 4.129 4 C -0.202 4.202 5 C 0.037 3.963 6 N -0.384 5.384 7 C 0.339 3.661 8 O -0.425 6.425 9 C 0.035 3.965 10 H 0.074 0.926 11 C -0.577 4.577 12 H 0.085 0.915 13 C -0.133 4.133 14 N -0.474 5.474 15 Si 0.712 3.288 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.208 1.208 19 C -0.015 4.015 20 C -0.118 4.118 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.167 4.167 24 C -0.083 4.083 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.229 0.771 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.410 2.698 1.912 7.213 hybrid contribution 0.796 1.153 -0.365 1.448 sum -5.615 3.851 1.546 6.982 Atomic orbital electron populations 1.23722 0.95141 1.01661 1.01641 1.21939 0.95323 0.95784 0.99464 1.20623 1.00582 0.94026 0.97718 1.21705 1.01228 1.01199 0.96055 1.20028 0.98192 0.91884 0.86222 1.45814 1.60213 1.25714 1.06698 1.21029 0.73555 0.79041 0.92459 1.90534 1.52559 1.52244 1.47192 1.17888 0.95659 0.92493 0.90482 0.92589 1.20730 1.06795 1.20578 1.09596 0.91499 1.25051 0.97433 0.96010 0.94851 1.70090 1.22637 1.38498 1.16128 0.86642 0.80589 0.82303 0.79293 1.19496 1.20976 1.20829 1.19816 0.94758 0.93490 0.93401 1.20969 1.00134 0.92693 0.98033 1.20817 0.96857 0.97528 1.01079 1.20767 0.97362 0.98100 1.00097 1.20987 0.99876 0.94366 1.01422 1.21139 0.93604 0.95658 0.97855 0.88587 0.88400 0.90592 0.91613 0.92742 0.92939 0.92384 0.92462 0.91986 0.77074 0.92612 0.87537 0.88137 0.88246 0.88080 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 13.88 29.02 0.40 -1.82 16 2 C -0.12 -1.75 4.67 -101.06 -0.47 -2.22 16 3 C -0.09 -1.21 6.10 -27.88 -0.17 -1.38 16 4 C -0.14 -1.72 9.89 37.16 0.37 -1.35 16 5 C 0.16 2.85 5.84 -5.19 -0.03 2.82 16 6 N -0.73 -14.63 5.45 -61.47 -0.33 -14.96 16 7 C 0.55 13.08 5.45 -10.99 -0.06 13.02 16 8 O -0.55 -14.75 13.95 5.55 0.08 -14.67 16 9 C 0.06 1.32 2.78 -94.08 -0.26 1.06 16 10 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 11 C -0.54 -13.15 7.12 -34.44 -0.25 -13.39 16 12 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 13 C 0.07 1.88 3.99 -17.82 -0.07 1.81 16 14 N -0.84 -22.98 10.88 55.43 0.60 -22.38 16 15 Si 0.88 19.79 29.54 -169.99 -5.02 14.77 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.01 -0.33 4.52 -104.63 -0.47 -0.80 16 20 C -0.10 -2.30 8.21 -39.59 -0.33 -2.63 16 21 C -0.14 -3.01 10.05 -39.58 -0.40 -3.41 16 22 C -0.15 -2.92 10.05 -39.58 -0.40 -3.31 16 23 C -0.15 -3.15 10.05 -39.58 -0.40 -3.54 16 24 C -0.06 -1.53 8.20 -39.58 -0.32 -1.85 16 25 H 0.10 0.99 7.99 -52.49 -0.42 0.57 16 26 H 0.10 1.16 7.99 -52.49 -0.42 0.74 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 0.75 7.99 -51.93 -0.41 0.34 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.02 7.99 -51.93 -0.41 0.60 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.40 7.31 8.35 -40.82 -0.34 6.97 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.11 2.43 7.01 -52.49 -0.37 2.06 16 37 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.13 3.09 6.02 -52.49 -0.32 2.78 16 LS Contribution 334.42 15.07 5.04 5.04 Total: -1.00 -29.15 334.42 -8.53 -37.68 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.04 Total: 11.53 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -2.85 Total: -17.01 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.27 Total: -37.34 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.08 Total: -14.67 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.15 -8.53 -37.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583839548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.702 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds