Wall clock time and date at job start Mon Mar 30 2020 01:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50708 * 119.99784 * 2 1 4 4 C 1.53003 * 109.46829 * 95.00045 * 3 2 1 5 5 C 1.50689 * 120.00323 * 180.02562 * 2 1 3 6 6 N 1.46503 * 109.47365 * 94.99541 * 5 2 1 7 7 C 1.34777 * 120.00592 * 179.97438 * 6 5 2 8 8 O 1.21291 * 119.99339 * 0.02562 * 7 6 5 9 9 C 1.50692 * 120.00414 * 180.02562 * 7 6 5 10 10 H 1.09005 * 109.46777 * 60.00312 * 9 7 6 11 11 C 1.50692 * 109.47178 * 300.00482 * 9 7 6 12 12 H 1.08002 * 120.00093 * 124.62238 * 11 9 7 13 13 C 1.37878 * 119.99925 * 304.33840 * 11 9 7 14 14 N 1.31508 * 120.00110 * 6.38767 * 13 11 9 15 15 Si 1.86805 * 119.99887 * 186.38871 * 13 11 9 16 16 H 1.48502 * 109.47219 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47001 * 120.00368 * 15 13 11 18 18 H 1.48506 * 109.46992 * 240.00220 * 15 13 11 19 19 C 1.50703 * 109.47224 * 180.02562 * 9 7 6 20 20 C 1.38240 * 119.99704 * 313.11149 * 19 9 7 21 21 C 1.38241 * 119.99504 * 179.80760 * 20 19 9 22 22 C 1.38230 * 120.00041 * 0.40109 * 21 20 19 23 23 C 1.38241 * 119.99902 * 359.85802 * 22 21 20 24 24 C 1.38222 * 120.00123 * 359.95141 * 23 22 21 25 25 H 1.08001 * 120.00174 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.99805 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46975 * 215.00290 * 3 2 1 28 28 H 1.09005 * 109.46828 * 335.00352 * 3 2 1 29 29 H 1.08999 * 109.46825 * 60.00255 * 4 3 2 30 30 H 1.09005 * 109.46670 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47039 * 299.99856 * 4 3 2 32 32 H 1.09005 * 109.47066 * 335.00076 * 5 2 1 33 33 H 1.08998 * 109.47739 * 215.00033 * 5 2 1 34 34 H 0.97002 * 119.99564 * 0.02562 * 6 5 2 35 35 H 0.96997 * 119.99941 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.00455 * 0.02562 * 20 19 9 37 37 H 1.07996 * 119.99510 * 180.22987 * 21 20 19 38 38 H 1.08003 * 119.99824 * 179.82874 * 22 21 20 39 39 H 1.08005 * 119.99490 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.99928 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.4273 1.6840 1.4371 5 6 2.0635 -1.3050 -0.0006 6 7 2.4119 -1.6672 -1.3767 7 6 3.0935 -2.8036 -1.6226 8 8 3.4181 -3.5266 -0.7045 9 6 3.4523 -3.1758 -3.0381 10 1 4.0771 -2.3949 -3.4718 11 6 2.1935 -3.3226 -3.8533 12 1 2.0680 -2.7505 -4.7607 13 6 1.2046 -4.1918 -3.4440 14 7 1.3019 -4.7979 -2.2810 15 14 -0.2734 -4.5086 -4.5416 16 1 -0.1454 -3.7100 -5.7871 17 1 -0.3360 -5.9525 -4.8830 18 1 -1.5142 -4.1147 -3.8270 19 6 4.2058 -4.4809 -3.0387 20 6 5.2434 -4.6804 -2.1472 21 6 5.9319 -5.8791 -2.1451 22 6 5.5884 -6.8751 -3.0399 23 6 4.5543 -6.6735 -3.9350 24 6 3.8632 -5.4764 -3.9344 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 2.9741 1.1990 -0.5895 28 1 1.4384 2.0855 -0.4343 29 1 3.0523 0.9036 1.8713 30 1 2.9719 2.6282 1.4371 31 1 1.5166 1.7902 2.0265 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1990 0.5889 34 1 2.1526 -1.0886 -2.1109 35 1 0.6059 -5.4091 -1.9929 36 1 5.5137 -3.9011 -1.4501 37 1 6.7401 -6.0363 -1.4462 38 1 6.1281 -7.8106 -3.0401 39 1 4.2861 -7.4516 -4.6344 40 1 3.0551 -5.3191 -4.6334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583839549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:23 Heat of formation + Delta-G solvation = -5.953641 kcal Electronic energy + Delta-G solvation = -21131.044161 eV Core-core repulsion = 18103.623701 eV Total energy + Delta-G solvation = -3027.420459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.93918 -37.62234 -36.30188 -33.56061 -32.79758 -30.81576 -30.18907 -29.68468 -27.51749 -25.46537 -23.71321 -23.41450 -21.26156 -20.51747 -19.14482 -18.29065 -16.74322 -15.94007 -15.25118 -15.09950 -14.76656 -14.75847 -14.36942 -13.87784 -13.62201 -13.30500 -13.06346 -12.55312 -12.41774 -12.33759 -12.16608 -11.94196 -11.84979 -11.34653 -11.22512 -10.96940 -10.82421 -10.72168 -10.51260 -10.41824 -10.02545 -9.66547 -9.37453 -9.11566 -8.70510 -8.17438 -7.87198 -7.68694 -7.39338 -6.13030 -4.26530 2.31524 2.55761 2.60345 3.20091 3.30676 3.31970 4.21638 4.35909 4.63223 4.93730 4.98571 5.04560 5.17058 5.34543 5.43512 5.65633 5.85713 5.85861 5.93396 5.97734 6.04960 6.08059 6.12282 6.23263 6.27925 6.41791 6.63373 6.68497 6.78560 6.82685 6.94389 7.05887 7.13929 7.21502 7.54525 7.62087 7.66393 7.71642 7.81285 8.16462 8.28414 8.67689 8.89224 9.39493 9.80241 10.88816 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.006565 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.709121 B = 4263.963572 C = 5571.857733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.134 4.134 3 C -0.088 4.088 4 C -0.145 4.145 5 C 0.164 3.836 6 N -0.730 5.730 7 C 0.554 3.446 8 O -0.551 6.551 9 C 0.055 3.945 10 H 0.056 0.944 11 C -0.540 4.540 12 H 0.067 0.933 13 C 0.076 3.924 14 N -0.841 5.841 15 Si 0.884 3.116 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.284 1.284 19 C -0.015 4.015 20 C -0.099 4.099 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.147 4.147 24 C -0.074 4.074 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.395 0.605 35 H 0.264 0.736 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 7.976 1.839 8.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.135 4.135 3 C -0.126 4.126 4 C -0.203 4.203 5 C 0.039 3.961 6 N -0.383 5.383 7 C 0.343 3.657 8 O -0.428 6.428 9 C 0.034 3.966 10 H 0.074 0.926 11 C -0.578 4.578 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.474 5.474 15 Si 0.711 3.289 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.210 1.210 19 C -0.016 4.016 20 C -0.117 4.117 21 C -0.161 4.161 22 C -0.163 4.163 23 C -0.165 4.165 24 C -0.092 4.092 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.076 7.284 2.666 8.030 hybrid contribution -1.350 -0.210 -0.678 1.525 sum 0.726 7.075 1.988 7.385 Atomic orbital electron populations 1.23787 0.95323 1.01794 1.00305 1.21896 0.95426 0.95540 1.00626 1.20593 1.00227 0.94240 0.97505 1.21722 1.01368 1.01001 0.96184 1.19989 0.97920 0.92134 0.86014 1.45769 1.60254 1.25649 1.06633 1.20928 0.75003 0.77962 0.91790 1.90523 1.55193 1.49798 1.47253 1.17886 0.95941 0.91774 0.90981 0.92583 1.20723 1.00691 1.26736 1.09619 0.91517 1.25042 0.97890 0.95442 0.94792 1.70041 1.33144 1.26570 1.17653 0.86661 0.82834 0.78403 0.81030 1.19468 1.20718 1.21028 1.19873 0.92163 0.96590 0.92992 1.20999 0.95913 0.97094 0.97707 1.20841 1.00797 0.94817 0.99671 1.20781 0.99197 0.98341 0.98026 1.20998 0.97653 0.97831 1.00048 1.21176 0.97455 0.91746 0.98782 0.88657 0.88192 0.91043 0.91619 0.92444 0.92790 0.92843 0.92075 0.92568 0.77182 0.92573 0.87365 0.88039 0.88157 0.87988 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 13.88 29.01 0.40 -1.96 16 2 C -0.13 -1.91 4.67 -101.07 -0.47 -2.38 16 3 C -0.09 -1.03 6.10 -27.88 -0.17 -1.20 16 4 C -0.15 -1.51 9.89 37.16 0.37 -1.14 16 5 C 0.16 2.94 5.83 -5.20 -0.03 2.91 16 6 N -0.73 -14.75 5.45 -61.48 -0.33 -15.09 16 7 C 0.55 13.25 5.28 -10.99 -0.06 13.19 16 8 O -0.55 -14.86 13.86 5.55 0.08 -14.78 16 9 C 0.06 1.31 2.78 -94.08 -0.26 1.05 16 10 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 11 C -0.54 -13.25 7.11 -34.44 -0.24 -13.49 16 12 H 0.07 1.60 7.82 -52.49 -0.41 1.19 16 13 C 0.08 1.94 3.90 -17.82 -0.07 1.87 16 14 N -0.84 -23.13 11.11 55.43 0.62 -22.51 16 15 Si 0.88 19.93 29.54 -169.99 -5.02 14.91 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 C -0.02 -0.37 4.63 -104.62 -0.48 -0.85 16 20 C -0.10 -2.26 8.21 -39.58 -0.32 -2.59 16 21 C -0.14 -2.96 10.05 -39.58 -0.40 -3.36 16 22 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 23 C -0.15 -3.09 10.05 -39.59 -0.40 -3.49 16 24 C -0.07 -1.73 8.46 -39.59 -0.33 -2.06 16 25 H 0.10 1.08 7.99 -52.49 -0.42 0.66 16 26 H 0.10 1.48 7.99 -52.49 -0.42 1.06 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.68 7.99 -51.93 -0.41 0.27 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 1.25 7.99 -51.93 -0.41 0.83 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 7.39 8.35 -40.82 -0.34 7.05 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.11 2.46 6.98 -52.49 -0.37 2.09 16 37 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 40 H 0.13 3.07 6.05 -52.48 -0.32 2.75 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -29.37 334.67 -8.54 -37.91 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.04 Total: 11.33 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -2.87 Total: -16.80 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.28 Total: -37.60 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.08 Total: -14.78 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.37 -8.54 -37.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583839549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.955 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds