Wall clock time and date at job start Mon Mar 30 2020 01:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50708 * 119.99784 * 2 1 4 4 C 1.53003 * 109.46829 * 95.00045 * 3 2 1 5 5 C 1.50689 * 120.00323 * 180.02562 * 2 1 3 6 6 N 1.46503 * 109.47365 * 94.99541 * 5 2 1 7 7 C 1.34777 * 120.00592 * 179.97438 * 6 5 2 8 8 O 1.21291 * 119.99339 * 0.02562 * 7 6 5 9 9 C 1.50692 * 120.00414 * 180.02562 * 7 6 5 10 10 H 1.09005 * 109.46777 * 60.00312 * 9 7 6 11 11 C 1.50692 * 109.47178 * 300.00482 * 9 7 6 12 12 H 1.08002 * 120.00093 * 124.62238 * 11 9 7 13 13 C 1.37878 * 119.99925 * 304.33840 * 11 9 7 14 14 N 1.31508 * 120.00110 * 6.38767 * 13 11 9 15 15 Si 1.86805 * 119.99887 * 186.38871 * 13 11 9 16 16 H 1.48502 * 109.47219 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47001 * 120.00368 * 15 13 11 18 18 H 1.48506 * 109.46992 * 240.00220 * 15 13 11 19 19 C 1.50703 * 109.47224 * 180.02562 * 9 7 6 20 20 C 1.38240 * 119.99704 * 313.11149 * 19 9 7 21 21 C 1.38241 * 119.99504 * 179.80760 * 20 19 9 22 22 C 1.38230 * 120.00041 * 0.40109 * 21 20 19 23 23 C 1.38241 * 119.99902 * 359.85802 * 22 21 20 24 24 C 1.38222 * 120.00123 * 359.95141 * 23 22 21 25 25 H 1.08001 * 120.00174 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.99805 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46975 * 215.00290 * 3 2 1 28 28 H 1.09005 * 109.46828 * 335.00352 * 3 2 1 29 29 H 1.08999 * 109.46825 * 60.00255 * 4 3 2 30 30 H 1.09005 * 109.46670 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47039 * 299.99856 * 4 3 2 32 32 H 1.09005 * 109.47066 * 335.00076 * 5 2 1 33 33 H 1.08998 * 109.47739 * 215.00033 * 5 2 1 34 34 H 0.97002 * 119.99564 * 0.02562 * 6 5 2 35 35 H 0.96997 * 119.99941 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.00455 * 0.02562 * 20 19 9 37 37 H 1.07996 * 119.99510 * 180.22987 * 21 20 19 38 38 H 1.08003 * 119.99824 * 179.82874 * 22 21 20 39 39 H 1.08005 * 119.99490 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.99928 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.4273 1.6840 1.4371 5 6 2.0635 -1.3050 -0.0006 6 7 2.4119 -1.6672 -1.3767 7 6 3.0935 -2.8036 -1.6226 8 8 3.4181 -3.5266 -0.7045 9 6 3.4523 -3.1758 -3.0381 10 1 4.0771 -2.3949 -3.4718 11 6 2.1935 -3.3226 -3.8533 12 1 2.0680 -2.7505 -4.7607 13 6 1.2046 -4.1918 -3.4440 14 7 1.3019 -4.7979 -2.2810 15 14 -0.2734 -4.5086 -4.5416 16 1 -0.1454 -3.7100 -5.7871 17 1 -0.3360 -5.9525 -4.8830 18 1 -1.5142 -4.1147 -3.8270 19 6 4.2058 -4.4809 -3.0387 20 6 5.2434 -4.6804 -2.1472 21 6 5.9319 -5.8791 -2.1451 22 6 5.5884 -6.8751 -3.0399 23 6 4.5543 -6.6735 -3.9350 24 6 3.8632 -5.4764 -3.9344 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 2.9741 1.1990 -0.5895 28 1 1.4384 2.0855 -0.4343 29 1 3.0523 0.9036 1.8713 30 1 2.9719 2.6282 1.4371 31 1 1.5166 1.7902 2.0265 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1990 0.5889 34 1 2.1526 -1.0886 -2.1109 35 1 0.6059 -5.4091 -1.9929 36 1 5.5137 -3.9011 -1.4501 37 1 6.7401 -6.0363 -1.4462 38 1 6.1281 -7.8106 -3.0401 39 1 4.2861 -7.4516 -4.6344 40 1 3.0551 -5.3191 -4.6334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583839549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:23 Heat of formation + Delta-G solvation = -21.930697 kcal Electronic energy + Delta-G solvation = -21131.736978 eV Core-core repulsion = 18103.623701 eV Total energy + Delta-G solvation = -3028.113276 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71504 -39.24359 -37.64949 -35.46288 -34.33876 -32.65915 -31.38238 -31.26032 -29.23521 -27.07427 -25.50041 -24.36985 -22.96797 -22.22276 -20.94517 -19.57504 -18.55558 -17.51302 -17.03036 -16.73698 -16.55540 -16.11770 -15.67979 -15.45848 -15.34280 -14.84824 -14.29956 -14.07882 -14.00480 -13.92308 -13.70132 -13.45074 -13.06413 -13.01514 -12.79290 -12.67330 -12.48745 -12.27889 -11.76158 -11.73515 -11.61700 -11.43498 -11.17330 -10.70952 -10.37340 -9.92465 -9.61714 -9.39793 -9.11322 -8.09398 -6.26371 0.85440 0.90132 1.17903 1.39105 1.45084 1.53383 2.34756 2.49790 2.98791 3.19316 3.36548 3.82442 3.90166 4.32757 4.35026 4.37813 4.48635 4.53901 4.56252 4.64044 4.70135 4.78988 4.88401 4.95011 5.00091 5.10007 5.11482 5.15291 5.18009 5.40102 5.44327 5.52607 5.64608 5.70378 5.87210 5.90294 5.93444 5.96587 6.01200 6.41004 6.51347 6.76434 7.13319 7.42082 7.97567 8.91306 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.006565 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.709121 B = 4263.963572 C = 5571.857733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.140 4.140 3 C -0.083 4.083 4 C -0.144 4.144 5 C 0.167 3.833 6 N -0.721 5.721 7 C 0.551 3.449 8 O -0.588 6.588 9 C 0.046 3.954 10 H 0.068 0.932 11 C -0.533 4.533 12 H 0.072 0.928 13 C 0.041 3.959 14 N -0.875 5.875 15 Si 0.939 3.061 16 H -0.258 1.258 17 H -0.286 1.286 18 H -0.289 1.289 19 C -0.038 4.038 20 C -0.118 4.118 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.151 4.151 24 C -0.096 4.096 25 H 0.128 0.872 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.054 0.946 34 H 0.403 0.597 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.128 0.872 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.988 8.684 1.208 8.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.120 4.120 4 C -0.201 4.201 5 C 0.043 3.957 6 N -0.373 5.373 7 C 0.341 3.659 8 O -0.468 6.468 9 C 0.025 3.975 10 H 0.086 0.914 11 C -0.571 4.571 12 H 0.090 0.910 13 C -0.163 4.163 14 N -0.509 5.509 15 Si 0.765 3.235 16 H -0.181 1.181 17 H -0.213 1.213 18 H -0.215 1.215 19 C -0.039 4.039 20 C -0.136 4.136 21 C -0.163 4.163 22 C -0.159 4.159 23 C -0.169 4.169 24 C -0.114 4.114 25 H 0.146 0.854 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.237 0.763 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.157 0.843 39 H 0.146 0.854 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.140 8.038 2.006 8.557 hybrid contribution -1.330 -0.435 -0.478 1.478 sum 0.810 7.603 1.528 7.797 Atomic orbital electron populations 1.23925 0.95076 1.02437 0.98852 1.21811 0.95561 0.94797 1.01855 1.20600 0.99981 0.93028 0.98426 1.21718 1.01678 1.01421 0.95264 1.19976 0.97765 0.93454 0.84484 1.45695 1.58968 1.24672 1.07951 1.20999 0.75003 0.78379 0.91521 1.90487 1.56845 1.51237 1.48196 1.18007 0.96035 0.92552 0.90923 0.91406 1.20918 1.00740 1.26035 1.09422 0.91014 1.25578 1.00017 0.95273 0.95451 1.70206 1.33690 1.27619 1.19432 0.85796 0.79863 0.77914 0.79935 1.18139 1.21254 1.21531 1.19981 0.92982 0.96980 0.93971 1.21059 0.96544 0.98197 0.97779 1.21217 1.00983 0.93977 1.00098 1.21201 0.98554 0.99479 0.96647 1.21338 0.97450 0.97448 1.00638 1.21178 0.98074 0.93033 0.99131 0.85422 0.90092 0.91561 0.89496 0.93774 0.90946 0.92218 0.95203 0.92797 0.76286 0.93550 0.88248 0.85151 0.84253 0.85389 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 13.88 67.78 0.94 -3.32 16 2 C -0.14 -3.86 4.67 -16.49 -0.08 -3.93 16 3 C -0.08 -1.77 6.10 29.85 0.18 -1.59 16 4 C -0.14 -2.70 9.89 71.98 0.71 -1.99 16 5 C 0.17 6.17 5.83 85.63 0.50 6.67 16 6 N -0.72 -29.74 5.45 -466.79 -2.54 -32.29 16 7 C 0.55 27.11 5.28 87.65 0.46 27.57 16 8 O -0.59 -32.89 13.86 -3.06 -0.04 -32.94 16 9 C 0.05 2.22 2.78 -13.04 -0.04 2.18 16 10 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16 11 C -0.53 -26.29 7.11 25.60 0.18 -26.11 16 12 H 0.07 3.39 7.82 -2.91 -0.02 3.37 16 13 C 0.04 2.10 3.90 84.66 0.33 2.43 16 14 N -0.88 -49.23 11.11 21.45 0.24 -49.00 16 15 Si 0.94 41.08 29.54 68.60 2.03 43.11 16 16 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 17 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 19 C -0.04 -1.87 4.63 -19.86 -0.09 -1.96 16 20 C -0.12 -5.43 8.21 22.27 0.18 -5.25 16 21 C -0.14 -5.77 10.05 22.27 0.22 -5.55 16 22 C -0.14 -5.26 10.05 22.27 0.22 -5.03 16 23 C -0.15 -6.12 10.05 22.27 0.22 -5.89 16 24 C -0.10 -4.53 8.46 22.26 0.19 -4.34 16 25 H 0.13 2.49 7.99 -2.91 -0.02 2.47 16 26 H 0.08 2.40 7.99 -2.91 -0.02 2.38 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.52 7.99 -2.38 -0.02 1.50 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.03 1.28 7.99 -2.38 -0.02 1.26 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.40 15.12 8.35 -92.71 -0.77 14.35 16 35 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.10 4.65 6.98 -2.91 -0.02 4.63 16 37 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 38 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 39 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.11 5.53 6.05 -2.91 -0.02 5.51 16 Total: -1.00 -64.11 334.67 4.07 -60.04 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: 0.24 Total: 37.17 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 4.15 Total: -26.10 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -2.30 Total: -81.28 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.04 Total: -32.94 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -64.11 4.07 -60.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583839549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.107 kcal (2) G-P(sol) polarization free energy of solvation -64.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds