Wall clock time and date at job start Mon Mar 30 2020 01:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47221 * 124.30678 * 3 2 1 5 5 C 1.36940 * 119.99703 * 263.92052 * 4 3 2 6 6 H 1.07999 * 119.99923 * 199.22024 * 5 4 3 7 7 C 1.38811 * 120.00178 * 19.22332 * 5 4 3 8 8 N 1.31623 * 119.99953 * 22.41286 * 7 5 4 9 9 Si 1.86800 * 120.00095 * 202.41254 * 7 5 4 10 10 H 1.48498 * 109.47238 * 89.99801 * 9 7 5 11 11 H 1.48501 * 109.46992 * 209.99852 * 9 7 5 12 12 H 1.48505 * 109.46864 * 330.00031 * 9 7 5 13 13 C 1.46499 * 120.00298 * 83.91937 * 4 3 2 14 14 C 1.52993 * 109.47176 * 90.00060 * 13 4 3 15 15 H 1.09001 * 109.47280 * 305.00099 * 14 13 4 16 16 O 1.42899 * 109.47051 * 65.00229 * 14 13 4 17 17 C 1.53000 * 109.47273 * 184.99801 * 14 13 4 18 18 H 1.09006 * 109.47041 * 60.00138 * 17 14 13 19 19 C 1.53003 * 109.47435 * 300.00124 * 17 14 13 20 20 C 1.50703 * 109.47501 * 179.97438 * 17 14 13 21 21 C 1.38232 * 120.00264 * 240.00518 * 20 17 14 22 22 C 1.38227 * 120.00179 * 179.97438 * 21 20 17 23 23 C 1.38237 * 120.00042 * 359.97438 * 22 21 20 24 24 C 1.38241 * 120.00007 * 359.97438 * 23 22 21 25 25 C 1.38233 * 119.99683 * 359.97438 * 24 23 22 26 26 H 4.40635 * 5.51486 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.47182 * 4.30134 * 3 2 1 28 28 H 1.09004 * 109.46963 * 244.30571 * 3 2 1 29 29 H 0.96999 * 119.99591 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47142 * 329.99681 * 13 4 3 31 31 H 1.09004 * 109.47373 * 210.00108 * 13 4 3 32 32 H 0.96699 * 114.00439 * 60.00089 * 16 14 13 33 33 H 1.08996 * 109.47064 * 299.99905 * 19 17 14 34 34 H 1.09004 * 109.46413 * 59.99832 * 19 17 14 35 35 H 1.08998 * 109.47477 * 179.97438 * 19 17 14 36 36 H 1.08001 * 119.99863 * 0.24937 * 21 20 17 37 37 H 1.07996 * 120.00414 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.00103 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.99931 * 179.97438 * 24 23 22 40 40 H 1.08000 * 119.99750 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7793 -1.1409 5 6 3.4810 0.1455 -2.3042 6 1 4.1170 0.6432 -3.0213 7 6 3.0151 -1.1365 -2.5617 8 7 1.9312 -1.5764 -1.9584 9 14 3.9266 -2.2373 -3.7645 10 1 4.9528 -3.0247 -3.0350 11 1 2.9643 -3.1617 -4.4163 12 1 4.5872 -1.4006 -4.7984 13 6 3.2509 2.2360 -1.0373 14 6 4.6439 2.6004 -0.5203 15 1 4.8296 2.0815 0.4202 16 8 5.6261 2.2098 -1.4818 17 6 4.7247 4.1114 -0.2937 18 1 3.9754 4.4094 0.4397 19 6 4.4641 4.8397 -1.6138 20 6 6.0966 4.4703 0.2162 21 6 6.2381 5.0829 1.4473 22 6 7.4965 5.4116 1.9153 23 6 8.6137 5.1273 1.1523 24 6 8.4724 4.5138 -0.0784 25 6 7.2139 4.1841 -0.5458 26 1 -1.0501 0.0001 0.0002 27 1 3.0099 -1.0240 -0.0771 28 1 3.0092 0.4464 0.9261 29 1 1.6055 -2.4721 -2.1387 30 1 2.4968 2.6128 -0.3464 31 1 3.0994 2.6834 -2.0197 32 1 5.5222 2.6336 -2.3447 33 1 5.2133 4.5417 -2.3472 34 1 3.4716 4.5800 -1.9821 35 1 4.5212 5.9162 -1.4524 36 1 5.3656 5.3006 2.0455 37 1 7.6070 5.8905 2.8769 38 1 9.5969 5.3845 1.5178 39 1 9.3452 4.2921 -0.6746 40 1 7.1035 3.7051 -1.5075 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491689574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:35 Heat of formation + Delta-G solvation = 52.131045 kcal Electronic energy + Delta-G solvation = -20993.677114 eV Core-core repulsion = 17968.775396 eV Total energy + Delta-G solvation = -3024.901718 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.64203 -37.56635 -35.40767 -33.27634 -31.50819 -31.23102 -30.73259 -29.45327 -27.42210 -26.02448 -24.65577 -22.58629 -22.33369 -20.79508 -19.71527 -17.43448 -16.84983 -16.42533 -15.86967 -15.43571 -15.00203 -14.67855 -14.43336 -14.00612 -13.77085 -13.31062 -13.24722 -13.13611 -12.78660 -12.40391 -12.03835 -11.84909 -11.45669 -11.30700 -11.15036 -11.05644 -10.79225 -10.75337 -10.54526 -10.30328 -10.16975 -9.92050 -9.46364 -8.91078 -8.76772 -8.70579 -8.51485 -8.33936 -6.87182 -5.71571 -3.12563 1.49441 1.55991 3.42744 3.50648 3.50950 3.92348 4.17770 4.40306 4.59041 4.75644 4.92911 5.04266 5.09247 5.18973 5.25904 5.38166 5.43304 5.51297 5.60412 5.72808 5.77111 5.83732 5.94223 5.97561 6.06614 6.08037 6.20111 6.24487 6.32539 6.53072 6.59471 6.66704 6.68456 6.80113 6.88078 7.16075 7.23740 7.43690 7.84801 8.24119 8.37439 9.15415 9.22742 9.83559 10.30032 11.32097 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021249 B = 0.005005 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.401700 B = 5593.034561 C = 6333.012453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.095 4.095 3 C 0.268 3.732 4 N -0.579 5.579 5 C -0.248 4.248 6 H 0.075 0.925 7 C -0.001 4.001 8 N -0.891 5.891 9 Si 0.899 3.101 10 H -0.289 1.289 11 H -0.295 1.295 12 H -0.281 1.281 13 C 0.120 3.880 14 C 0.098 3.902 15 H 0.089 0.911 16 O -0.541 6.541 17 C -0.088 4.088 18 H 0.081 0.919 19 C -0.147 4.147 20 C -0.066 4.066 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.126 4.126 25 C -0.096 4.096 26 H 0.190 0.810 27 H 0.092 0.908 28 H 0.034 0.966 29 H 0.252 0.748 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.360 0.640 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.886 13.593 5.166 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 C -0.098 4.098 3 C 0.142 3.858 4 N -0.297 5.297 5 C -0.377 4.377 6 H 0.092 0.908 7 C -0.199 4.199 8 N -0.535 5.535 9 Si 0.729 3.271 10 H -0.216 1.216 11 H -0.222 1.222 12 H -0.206 1.206 13 C -0.007 4.007 14 C 0.036 3.964 15 H 0.107 0.893 16 O -0.345 6.345 17 C -0.108 4.108 18 H 0.099 0.901 19 C -0.204 4.204 20 C -0.067 4.067 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.144 4.144 25 C -0.113 4.113 26 H 0.207 0.793 27 H 0.110 0.890 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.207 0.793 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.033 13.051 5.610 16.320 hybrid contribution -0.131 -0.406 -1.043 1.127 sum 7.902 12.646 4.567 15.595 Atomic orbital electron populations 1.24173 0.95324 1.06200 1.06450 1.24326 0.95321 0.95333 0.94811 1.17720 0.82802 0.97653 0.87604 1.43879 1.74443 0.99767 1.11660 1.19138 1.23489 0.97870 0.97250 0.90772 1.24909 0.96261 0.99531 0.99237 1.70136 1.19620 1.17719 1.45990 0.86343 0.79231 0.80898 0.80599 1.21592 1.22210 1.20608 1.21504 0.93541 0.86317 0.99383 1.22705 0.91077 0.89762 0.92890 0.89328 1.86634 1.52861 1.71209 1.23809 1.20939 0.93532 0.98159 0.98162 0.90101 1.21871 1.02229 0.99878 0.96453 1.19851 0.95286 0.97205 0.94308 1.21071 0.97256 0.99749 0.95985 1.21033 0.92781 1.01090 0.99637 1.21073 0.98276 1.00339 0.95278 1.21171 0.97541 0.99339 0.96339 1.21303 0.91607 0.97545 1.00889 0.79323 0.88987 0.94788 0.93725 0.93856 0.92746 0.79296 0.92417 0.91506 0.92801 0.86520 0.86661 0.86772 0.86527 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.96 19.25 29.55 0.57 -6.39 16 2 C -0.09 -2.33 11.50 -37.12 -0.43 -2.75 16 3 C 0.27 6.37 5.41 -6.83 -0.04 6.33 16 4 N -0.58 -13.75 2.47 -176.58 -0.44 -14.18 16 5 C -0.25 -6.53 9.16 -15.06 -0.14 -6.67 16 6 H 0.07 1.91 7.74 -52.49 -0.41 1.51 16 7 C 0.00 -0.02 4.82 -17.43 -0.08 -0.11 16 8 N -0.89 -25.52 9.61 55.49 0.53 -24.98 16 9 Si 0.90 21.83 29.61 -169.99 -5.03 16.80 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.12 2.28 4.85 -4.05 -0.02 2.26 16 14 C 0.10 1.59 2.99 -26.73 -0.08 1.51 16 15 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 16 O -0.54 -9.28 9.93 -35.23 -0.35 -9.63 16 17 C -0.09 -1.15 2.53 -91.77 -0.23 -1.38 16 18 H 0.08 1.00 7.88 -51.93 -0.41 0.59 16 19 C -0.15 -1.71 8.35 37.16 0.31 -1.40 16 20 C -0.07 -0.88 4.78 -104.62 -0.50 -1.38 16 21 C -0.12 -1.51 9.67 -39.59 -0.38 -1.89 16 22 C -0.13 -1.46 10.05 -39.59 -0.40 -1.85 16 23 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 24 C -0.13 -1.54 10.05 -39.58 -0.40 -1.93 16 25 C -0.10 -1.27 8.30 -39.58 -0.33 -1.60 16 26 H 0.19 3.65 7.80 -54.09 -0.42 3.22 16 27 H 0.09 2.41 6.58 -51.93 -0.34 2.07 16 28 H 0.03 0.71 8.12 -51.93 -0.42 0.29 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.05 1.02 6.61 -51.93 -0.34 0.68 16 32 H 0.36 5.29 7.00 45.56 0.32 5.61 16 33 H 0.06 0.64 6.03 -51.93 -0.31 0.32 16 34 H 0.07 0.79 6.54 -51.93 -0.34 0.45 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.12 1.25 7.95 -52.49 -0.42 0.83 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.13 1.75 5.51 -52.49 -0.29 1.46 16 LS Contribution 329.29 15.07 4.96 4.96 Total: -1.00 -30.56 329.29 -7.92 -38.47 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.05 Total: 7.73 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -2.54 Total: -19.16 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.10 Total: -39.16 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.35 Total: -9.63 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.56 -7.92 -38.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491689574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.606 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds