Wall clock time and date at job start Mon Mar 30 2020 01:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47221 * 124.30678 * 3 2 1 5 5 C 1.36940 * 119.99703 * 263.92052 * 4 3 2 6 6 H 1.07999 * 119.99923 * 199.22024 * 5 4 3 7 7 C 1.38811 * 120.00178 * 19.22332 * 5 4 3 8 8 N 1.31623 * 119.99953 * 22.41286 * 7 5 4 9 9 Si 1.86800 * 120.00095 * 202.41254 * 7 5 4 10 10 H 1.48498 * 109.47238 * 89.99801 * 9 7 5 11 11 H 1.48501 * 109.46992 * 209.99852 * 9 7 5 12 12 H 1.48505 * 109.46864 * 330.00031 * 9 7 5 13 13 C 1.46499 * 120.00298 * 83.91937 * 4 3 2 14 14 C 1.52993 * 109.47176 * 90.00060 * 13 4 3 15 15 H 1.09001 * 109.47280 * 305.00099 * 14 13 4 16 16 O 1.42899 * 109.47051 * 65.00229 * 14 13 4 17 17 C 1.53000 * 109.47273 * 184.99801 * 14 13 4 18 18 H 1.09006 * 109.47041 * 60.00138 * 17 14 13 19 19 C 1.53003 * 109.47435 * 300.00124 * 17 14 13 20 20 C 1.50703 * 109.47501 * 179.97438 * 17 14 13 21 21 C 1.38232 * 120.00264 * 240.00518 * 20 17 14 22 22 C 1.38227 * 120.00179 * 179.97438 * 21 20 17 23 23 C 1.38237 * 120.00042 * 359.97438 * 22 21 20 24 24 C 1.38241 * 120.00007 * 359.97438 * 23 22 21 25 25 C 1.38233 * 119.99683 * 359.97438 * 24 23 22 26 26 H 4.40635 * 5.51486 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.47182 * 4.30134 * 3 2 1 28 28 H 1.09004 * 109.46963 * 244.30571 * 3 2 1 29 29 H 0.96999 * 119.99591 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47142 * 329.99681 * 13 4 3 31 31 H 1.09004 * 109.47373 * 210.00108 * 13 4 3 32 32 H 0.96699 * 114.00439 * 60.00089 * 16 14 13 33 33 H 1.08996 * 109.47064 * 299.99905 * 19 17 14 34 34 H 1.09004 * 109.46413 * 59.99832 * 19 17 14 35 35 H 1.08998 * 109.47477 * 179.97438 * 19 17 14 36 36 H 1.08001 * 119.99863 * 0.24937 * 21 20 17 37 37 H 1.07996 * 120.00414 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.00103 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.99931 * 179.97438 * 24 23 22 40 40 H 1.08000 * 119.99750 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7793 -1.1409 5 6 3.4810 0.1455 -2.3042 6 1 4.1170 0.6432 -3.0213 7 6 3.0151 -1.1365 -2.5617 8 7 1.9312 -1.5764 -1.9584 9 14 3.9266 -2.2373 -3.7645 10 1 4.9528 -3.0247 -3.0350 11 1 2.9643 -3.1617 -4.4163 12 1 4.5872 -1.4006 -4.7984 13 6 3.2509 2.2360 -1.0373 14 6 4.6439 2.6004 -0.5203 15 1 4.8296 2.0815 0.4202 16 8 5.6261 2.2098 -1.4818 17 6 4.7247 4.1114 -0.2937 18 1 3.9754 4.4094 0.4397 19 6 4.4641 4.8397 -1.6138 20 6 6.0966 4.4703 0.2162 21 6 6.2381 5.0829 1.4473 22 6 7.4965 5.4116 1.9153 23 6 8.6137 5.1273 1.1523 24 6 8.4724 4.5138 -0.0784 25 6 7.2139 4.1841 -0.5458 26 1 -1.0501 0.0001 0.0002 27 1 3.0099 -1.0240 -0.0771 28 1 3.0092 0.4464 0.9261 29 1 1.6055 -2.4721 -2.1387 30 1 2.4968 2.6128 -0.3464 31 1 3.0994 2.6834 -2.0197 32 1 5.5222 2.6336 -2.3447 33 1 5.2133 4.5417 -2.3472 34 1 3.4716 4.5800 -1.9821 35 1 4.5212 5.9162 -1.4524 36 1 5.3656 5.3006 2.0455 37 1 7.6070 5.8905 2.8769 38 1 9.5969 5.3845 1.5178 39 1 9.3452 4.2921 -0.6746 40 1 7.1035 3.7051 -1.5075 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491689574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:35 Heat of formation + Delta-G solvation = 35.639614 kcal Electronic energy + Delta-G solvation = -20994.392236 eV Core-core repulsion = 17968.775396 eV Total energy + Delta-G solvation = -3025.616840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68446 -38.85012 -37.10204 -34.41222 -33.45071 -32.98422 -31.63924 -30.58863 -28.81449 -27.91474 -26.01640 -23.94314 -23.33163 -22.23685 -20.83781 -19.31641 -18.34376 -17.64682 -17.24967 -16.76619 -16.54079 -15.87973 -15.76889 -15.38942 -15.14210 -15.03783 -14.48471 -14.38958 -14.07888 -13.50958 -13.28763 -13.12840 -12.97110 -12.91361 -12.72179 -12.36024 -12.23257 -12.15214 -11.99197 -11.85717 -11.69027 -11.50369 -10.89229 -10.75198 -10.50529 -10.27700 -9.67971 -9.47668 -8.76196 -7.76399 -5.16936 0.57077 0.64215 1.48094 1.52289 1.58142 2.33389 2.53533 2.62779 2.99820 3.34364 3.59148 3.84026 3.93925 4.00193 4.11301 4.22156 4.25841 4.29584 4.44669 4.52932 4.59436 4.64824 4.76154 4.82656 4.87858 5.01126 5.07704 5.13225 5.21261 5.27011 5.30980 5.35639 5.47290 5.65922 5.69455 5.75229 5.76452 5.89893 6.25833 6.35980 7.01707 7.17650 7.36696 7.89594 8.32754 9.25021 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021249 B = 0.005005 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.401700 B = 5593.034561 C = 6333.012453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.133 4.133 3 C 0.270 3.730 4 N -0.593 5.593 5 C -0.242 4.242 6 H 0.077 0.923 7 C -0.053 4.053 8 N -0.918 5.918 9 Si 0.954 3.046 10 H -0.294 1.294 11 H -0.304 1.304 12 H -0.270 1.270 13 C 0.121 3.879 14 C 0.113 3.887 15 H 0.070 0.930 16 O -0.556 6.556 17 C -0.077 4.077 18 H 0.089 0.911 19 C -0.144 4.144 20 C -0.081 4.081 21 C -0.133 4.133 22 C -0.132 4.132 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.113 4.113 26 H 0.222 0.778 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.242 0.758 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.371 0.629 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.626 15.309 5.570 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.136 4.136 3 C 0.145 3.855 4 N -0.313 5.313 5 C -0.372 4.372 6 H 0.095 0.905 7 C -0.249 4.249 8 N -0.564 5.564 9 Si 0.784 3.216 10 H -0.222 1.222 11 H -0.231 1.231 12 H -0.195 1.195 13 C -0.005 4.005 14 C 0.051 3.949 15 H 0.088 0.912 16 O -0.362 6.362 17 C -0.096 4.096 18 H 0.108 0.892 19 C -0.201 4.201 20 C -0.081 4.081 21 C -0.151 4.151 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.156 4.156 25 C -0.130 4.130 26 H 0.238 0.762 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.795 14.813 6.010 18.245 hybrid contribution -0.329 -0.853 -1.119 1.445 sum 8.467 13.960 4.891 17.044 Atomic orbital electron populations 1.24995 0.96343 1.04715 1.05133 1.24673 0.96115 0.96706 0.96099 1.17610 0.82933 0.96305 0.88702 1.44066 1.74568 1.01684 1.10934 1.19409 1.22204 0.97934 0.97638 0.90495 1.25512 0.97149 1.00866 1.01340 1.70285 1.21022 1.17250 1.47829 0.85458 0.77771 0.79246 0.79092 1.22204 1.23138 1.19484 1.21672 0.95335 0.83636 0.99872 1.22362 0.88916 0.91966 0.91658 0.91231 1.86605 1.53032 1.71891 1.24640 1.20777 0.94142 0.95468 0.99202 0.89231 1.21844 1.02044 1.00482 0.95702 1.19891 0.95035 0.98211 0.94990 1.21327 0.98379 0.99633 0.95764 1.21377 0.92404 1.00600 1.00573 1.21417 0.99542 0.99498 0.94850 1.21432 0.97662 0.99401 0.97070 1.21390 0.92339 0.98283 1.01029 0.76153 0.92158 0.92357 0.94804 0.93204 0.92510 0.78128 0.92102 0.91856 0.91555 0.85158 0.84295 0.84435 0.85174 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.19 19.25 74.32 1.43 -11.76 16 2 C -0.13 -6.51 11.50 31.13 0.36 -6.15 16 3 C 0.27 12.99 5.41 84.58 0.46 13.44 16 4 N -0.59 -28.15 2.47 -712.57 -1.76 -29.91 16 5 C -0.24 -12.71 9.16 84.03 0.77 -11.95 16 6 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 7 C -0.05 -2.94 4.82 84.86 0.41 -2.53 16 8 N -0.92 -53.45 9.61 21.65 0.21 -53.24 16 9 Si 0.95 45.46 29.61 68.60 2.03 47.49 16 10 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 11 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 C 0.12 4.49 4.85 86.38 0.42 4.90 16 14 C 0.11 3.58 2.99 30.59 0.09 3.67 16 15 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 16 O -0.56 -18.75 9.93 -148.98 -1.48 -20.23 16 17 C -0.08 -1.88 2.53 -11.54 -0.03 -1.91 16 18 H 0.09 2.04 7.88 -2.38 -0.02 2.02 16 19 C -0.14 -3.09 8.35 71.98 0.60 -2.49 16 20 C -0.08 -2.03 4.78 -19.86 -0.09 -2.12 16 21 C -0.13 -3.00 9.67 22.27 0.22 -2.79 16 22 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 23 C -0.14 -2.76 10.05 22.27 0.22 -2.53 16 24 C -0.14 -3.14 10.05 22.27 0.22 -2.91 16 25 C -0.11 -2.87 8.30 22.27 0.18 -2.68 16 26 H 0.22 8.03 7.80 -4.41 -0.03 8.00 16 27 H 0.06 3.26 6.58 -2.39 -0.02 3.25 16 28 H 0.06 2.44 8.12 -2.38 -0.02 2.42 16 29 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.05 1.78 8.07 -2.39 -0.02 1.76 16 31 H 0.06 2.07 6.61 -2.38 -0.02 2.06 16 32 H 0.37 10.59 7.00 -74.06 -0.52 10.07 16 33 H 0.06 1.26 6.03 -2.39 -0.01 1.25 16 34 H 0.06 1.40 6.54 -2.39 -0.02 1.38 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.13 2.48 7.95 -2.91 -0.02 2.46 16 37 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 40 H 0.13 3.28 5.51 -2.91 -0.02 3.26 16 Total: -1.00 -64.74 329.29 4.99 -59.74 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.51 Total: 26.39 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 5.48 Total: -30.24 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -1.55 Total: -83.16 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -1.48 Total: -20.23 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -64.74 4.99 -59.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491689574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.383 kcal (2) G-P(sol) polarization free energy of solvation -64.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds