Wall clock time and date at job start Mon Mar 30 2020 01:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47045 * 2 1 4 4 C 1.37093 * 119.99951 * 94.99637 * 3 2 1 5 5 H 1.08002 * 120.00041 * 214.02259 * 4 3 2 6 6 C 1.38947 * 120.00390 * 33.74506 * 4 3 2 7 7 N 1.31417 * 119.99891 * 22.15565 * 6 4 3 8 8 Si 1.86799 * 120.00397 * 202.15650 * 6 4 3 9 9 H 1.48499 * 109.46954 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47319 * 119.99902 * 8 6 4 11 11 H 1.48503 * 109.47165 * 239.99791 * 8 6 4 12 12 C 1.34774 * 120.00063 * 274.99568 * 3 2 1 13 13 O 1.21292 * 120.00118 * 180.02562 * 12 3 2 14 14 C 1.50710 * 119.99834 * 359.97438 * 12 3 2 15 15 C 1.52995 * 109.46948 * 180.02562 * 14 12 3 16 16 H 1.08998 * 115.55345 * 29.28017 * 15 14 12 17 17 C 1.53001 * 117.50010 * 243.60991 * 15 14 12 18 18 C 1.53001 * 60.00085 * 252.51134 * 17 15 14 19 19 H 1.09004 * 117.50068 * 107.48468 * 18 17 15 20 20 C 1.50699 * 117.49899 * 252.51227 * 18 17 15 21 21 C 1.38239 * 119.99777 * 8.34333 * 20 18 17 22 22 C 1.38234 * 119.99899 * 179.81435 * 21 20 18 23 23 C 1.38235 * 120.00074 * 0.41903 * 22 21 20 24 24 C 1.38242 * 120.00046 * 359.81291 * 23 22 21 25 25 C 1.38237 * 119.99844 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.47276 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47305 * 300.00030 * 1 2 3 28 28 H 1.08998 * 109.47253 * 59.99939 * 1 2 3 29 29 H 1.08995 * 109.46797 * 239.99961 * 2 1 3 30 30 H 1.09004 * 109.46572 * 119.99980 * 2 1 3 31 31 H 0.96996 * 120.00281 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.46993 * 300.00125 * 14 12 3 33 33 H 1.08996 * 109.47108 * 60.00060 * 14 12 3 34 34 H 1.09003 * 117.49505 * 359.97438 * 17 15 14 35 35 H 1.08995 * 117.50533 * 145.02072 * 17 15 14 36 36 H 1.07997 * 119.99905 * 359.97438 * 21 20 18 37 37 H 1.07998 * 120.00179 * 180.20341 * 22 21 20 38 38 H 1.07996 * 120.00296 * 179.79115 * 23 22 21 39 39 H 1.07999 * 120.00140 * 179.97438 * 24 23 22 40 40 H 1.07994 * 120.00048 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3443 1.9930 1.1828 5 1 2.1732 3.0520 1.3081 6 6 2.8896 1.2497 2.2223 7 7 3.4911 0.1090 1.9694 8 14 2.7676 1.8716 3.9795 9 1 2.0486 3.1708 3.9959 10 1 2.0255 0.8842 4.8038 11 1 4.1324 2.0546 4.5357 12 6 2.1472 2.0504 -1.1627 13 8 2.5519 3.1938 -1.1628 14 6 1.7894 1.3777 -2.4630 15 6 2.0258 2.3486 -3.6215 16 1 2.8130 3.0858 -3.4639 17 6 0.8082 2.7797 -4.4417 18 6 1.8320 1.8141 -5.0420 19 1 1.5362 0.7707 -5.1511 20 6 2.7445 2.3470 -6.1164 21 6 2.7581 3.6991 -6.4037 22 6 3.5978 4.1885 -7.3866 23 6 4.4178 3.3247 -8.0882 24 6 4.4007 1.9718 -7.8043 25 6 3.5641 1.4830 -6.8183 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8721 -0.4098 2.6950 32 1 2.4120 0.4932 -2.5978 33 1 0.7400 1.0836 -2.4432 34 1 -0.1612 2.3712 -4.1561 35 1 0.7945 3.8003 -4.8239 36 1 2.1144 4.3735 -5.8584 37 1 3.6108 5.2453 -7.6088 38 1 5.0714 3.7065 -8.8585 39 1 5.0410 1.2968 -8.3528 40 1 3.5505 0.4261 -6.5968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341164033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:03 Heat of formation + Delta-G solvation = -4.211278 kcal Electronic energy + Delta-G solvation = -20358.740702 eV Core-core repulsion = 17331.395797 eV Total energy + Delta-G solvation = -3027.344905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85217 -40.14715 -37.96178 -36.79894 -34.04255 -32.06387 -31.77369 -31.14867 -29.84636 -26.69338 -24.71699 -23.97895 -23.30768 -22.30248 -21.10458 -20.35604 -18.74450 -18.15086 -17.55364 -16.84794 -16.47422 -15.99212 -15.84919 -15.77184 -15.09872 -14.65333 -14.49685 -14.45953 -14.16871 -13.78419 -13.73306 -13.59107 -13.18712 -12.91044 -12.77788 -12.63931 -12.40553 -12.18698 -12.04625 -11.98988 -11.83497 -11.79586 -11.38958 -10.96627 -10.81602 -10.31130 -9.79891 -9.44786 -9.40007 -8.33409 -6.02879 0.43165 0.52430 1.35257 1.40748 1.54543 2.08139 2.29896 2.67752 3.02284 3.09992 3.17433 3.66681 3.88921 3.94737 4.03313 4.16277 4.23561 4.27020 4.32133 4.34022 4.54260 4.61937 4.67974 4.68329 4.77270 4.83504 4.89109 4.94482 5.07941 5.11753 5.19532 5.22912 5.33960 5.37790 5.47602 5.61075 5.61581 5.64193 5.76810 6.15122 6.22256 6.56567 7.20842 7.51822 8.11710 8.68618 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029695 B = 0.003681 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.691275 B = 7604.158221 C = 7814.987340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.092 3.908 3 N -0.456 5.456 4 C -0.343 4.343 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.888 5.888 8 Si 0.979 3.021 9 H -0.273 1.273 10 H -0.262 1.262 11 H -0.279 1.279 12 C 0.443 3.557 13 O -0.633 6.633 14 C -0.088 4.088 15 C -0.135 4.135 16 H 0.078 0.922 17 C -0.161 4.161 18 C -0.102 4.102 19 H 0.132 0.868 20 C -0.066 4.066 21 C -0.139 4.139 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.125 4.125 25 C -0.127 4.127 26 H 0.085 0.915 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.273 0.727 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 -2.191 -16.500 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.031 4.031 3 N -0.175 5.175 4 C -0.471 4.471 5 H 0.078 0.922 6 C -0.199 4.199 7 N -0.526 5.526 8 Si 0.803 3.197 9 H -0.198 1.198 10 H -0.186 1.186 11 H -0.205 1.205 12 C 0.234 3.766 13 O -0.520 6.520 14 C -0.127 4.127 15 C -0.154 4.154 16 H 0.097 0.903 17 C -0.198 4.198 18 C -0.120 4.120 19 H 0.150 0.850 20 C -0.066 4.066 21 C -0.157 4.157 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.142 4.142 25 C -0.145 4.145 26 H 0.104 0.896 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.725 -1.819 -16.369 16.886 hybrid contribution 0.281 0.481 1.203 1.326 sum -3.443 -1.338 -15.166 15.610 Atomic orbital electron populations 1.22101 0.95280 1.02477 1.01285 1.21718 0.94142 0.83424 1.03842 1.43838 1.55928 1.13141 1.04573 1.19414 1.41937 0.94747 0.90981 0.92189 1.26031 0.93622 0.96597 1.03674 1.69984 1.32825 1.15849 1.33980 0.85110 0.78148 0.78661 0.77808 1.19786 1.18628 1.20459 1.21274 0.81240 0.87547 0.86575 1.90453 1.52492 1.21231 1.87831 1.21110 1.03619 0.98114 0.89870 1.21981 1.01811 1.01347 0.90224 0.90321 1.23298 0.94184 1.00012 1.02273 1.21271 0.99946 0.99817 0.90964 0.85034 1.19392 0.97155 0.93878 0.96133 1.21288 1.00289 0.95331 0.98825 1.21416 0.96241 1.00844 0.96084 1.21485 0.99503 0.93713 1.00472 1.21473 0.98845 0.96247 0.97676 1.21251 0.96377 1.00398 0.96486 0.89642 0.94280 0.92494 0.91446 0.89303 0.91677 0.88716 0.87570 0.86832 0.88370 0.86153 0.84470 0.83805 0.83725 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 10.15 71.98 0.73 -4.48 16 2 C 0.09 3.93 5.44 86.38 0.47 4.40 16 3 N -0.46 -23.78 2.56 -635.53 -1.63 -25.40 16 4 C -0.34 -19.94 8.98 84.04 0.75 -19.19 16 5 H 0.06 3.77 7.70 -2.91 -0.02 3.75 16 6 C 0.00 0.16 4.93 84.92 0.42 0.57 16 7 N -0.89 -48.24 11.31 21.66 0.25 -47.99 16 8 Si 0.98 42.91 29.61 68.60 2.03 44.94 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 12 C 0.44 22.47 7.59 87.66 0.67 23.14 16 13 O -0.63 -37.69 15.39 -3.07 -0.05 -37.74 16 14 C -0.09 -3.18 4.59 29.85 0.14 -3.04 16 15 C -0.13 -4.60 5.05 -10.79 -0.05 -4.65 16 16 H 0.08 3.32 7.30 -2.39 -0.02 3.31 16 17 C -0.16 -4.30 9.51 30.60 0.29 -4.00 16 18 C -0.10 -2.65 5.76 -11.54 -0.07 -2.71 16 19 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 20 C -0.07 -1.72 5.61 -19.86 -0.11 -1.83 16 21 C -0.14 -3.59 9.30 22.27 0.21 -3.38 16 22 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 23 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 24 C -0.12 -2.49 10.05 22.27 0.22 -2.26 16 25 C -0.13 -2.92 9.74 22.27 0.22 -2.70 16 26 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.75 6.63 -2.39 -0.02 1.73 16 29 H 0.07 2.55 6.65 -2.39 -0.02 2.53 16 30 H 0.09 4.27 5.33 -2.39 -0.01 4.26 16 31 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 32 H 0.09 3.19 7.41 -2.38 -0.02 3.17 16 33 H 0.11 3.23 6.30 -2.39 -0.02 3.22 16 34 H 0.11 2.61 8.03 -2.39 -0.02 2.59 16 35 H 0.10 2.52 6.17 -2.39 -0.01 2.51 16 36 H 0.12 3.04 6.02 -2.91 -0.02 3.02 16 37 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -71.38 329.47 5.96 -65.42 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 1.03 Total: 25.91 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 4.33 Total: -25.14 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -1.38 Total: -73.40 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.05 Total: -37.74 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -71.38 5.96 -65.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341164033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.207 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds