Wall clock time and date at job start Mon Mar 30 2020 01:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47137 * 2 1 4 4 C 1.37099 * 119.99511 * 94.60731 * 3 2 1 5 5 H 1.08002 * 119.99883 * 217.77348 * 4 3 2 6 6 C 1.38950 * 120.00392 * 37.77873 * 4 3 2 7 7 N 1.31408 * 119.99783 * 19.68201 * 6 4 3 8 8 Si 1.86798 * 120.00120 * 199.68532 * 6 4 3 9 9 H 1.48491 * 109.47386 * 89.99737 * 8 6 4 10 10 H 1.48505 * 109.47154 * 210.00085 * 8 6 4 11 11 H 1.48505 * 109.46903 * 329.99492 * 8 6 4 12 12 C 1.34768 * 120.00295 * 274.33780 * 3 2 1 13 13 O 1.21292 * 120.00557 * 180.27718 * 12 3 2 14 14 C 1.50703 * 119.99778 * 0.26680 * 12 3 2 15 15 C 1.50707 * 109.46882 * 180.02562 * 14 12 3 16 16 C 1.38257 * 120.00075 * 269.73006 * 15 14 12 17 17 C 1.38214 * 119.99993 * 179.79186 * 16 15 14 18 18 C 1.38256 * 119.99938 * 0.46188 * 17 16 15 19 19 C 1.38222 * 119.99683 * 359.76674 * 18 17 16 20 20 C 1.50706 * 119.99467 * 179.97438 * 19 18 17 21 21 C 1.52992 * 117.49887 * 8.64984 * 20 19 18 22 22 C 1.52994 * 117.49990 * 300.02262 * 20 19 18 23 23 C 1.38207 * 119.99589 * 90.00500 * 15 14 12 24 24 H 1.09001 * 109.46809 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47078 * 299.99740 * 1 2 3 26 26 H 1.08998 * 109.46952 * 59.99514 * 1 2 3 27 27 H 1.08999 * 109.47078 * 240.00260 * 2 1 3 28 28 H 1.08997 * 109.47175 * 119.99737 * 2 1 3 29 29 H 0.97004 * 120.00018 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47597 * 300.00568 * 14 12 3 31 31 H 1.08997 * 109.47022 * 60.00803 * 14 12 3 32 32 H 1.08006 * 119.99975 * 359.97438 * 16 15 14 33 33 H 1.07997 * 119.99907 * 180.25023 * 17 16 15 34 34 H 1.07991 * 120.00095 * 179.79313 * 18 17 16 35 35 H 1.09001 * 115.54383 * 154.35651 * 20 19 18 36 36 H 1.08992 * 117.50318 * 359.97438 * 21 20 19 37 37 H 1.09007 * 117.49509 * 145.01837 * 21 20 19 38 38 H 1.09000 * 117.49655 * 214.97932 * 22 20 19 39 39 H 1.08993 * 117.50238 * 359.97438 * 22 20 19 40 40 H 1.07997 * 120.00727 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3368 1.9957 1.1835 5 1 2.1092 3.0416 1.3273 6 6 2.9523 1.2728 2.1981 7 7 3.5737 0.1488 1.9200 8 14 2.8964 1.8987 3.9572 9 1 1.6941 1.3550 4.6381 10 1 4.1166 1.4566 4.6789 11 1 2.8343 3.3825 3.9529 12 6 2.1598 2.0460 -1.1637 13 8 2.5688 3.1879 -1.1642 14 6 1.8098 1.3706 -2.4647 15 6 2.0564 2.3222 -3.6070 16 6 1.0442 3.1577 -4.0415 17 6 1.2716 4.0334 -5.0863 18 6 2.5085 4.0673 -5.7032 19 6 3.5190 3.2287 -5.2717 20 6 4.8671 3.2652 -5.9445 21 6 5.1212 4.3836 -6.9570 22 6 4.9192 2.9459 -7.4399 23 6 3.2927 2.3557 -4.2238 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.0031 -0.3560 2.6283 30 1 2.4295 0.4829 -2.5915 31 1 0.7590 1.0814 -2.4527 32 1 0.0765 3.1280 -3.5626 33 1 0.4821 4.6889 -5.4231 34 1 2.6852 4.7492 -6.5217 35 1 5.7075 2.9407 -5.3310 36 1 4.3134 5.0928 -7.1369 37 1 6.1292 4.7953 -7.0097 38 1 5.7942 2.4118 -7.8102 39 1 3.9787 2.7091 -7.9370 40 1 4.0823 1.7002 -3.8870 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413238223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:27 Heat of formation + Delta-G solvation = 12.478420 kcal Electronic energy + Delta-G solvation = -20606.977783 eV Core-core repulsion = 17580.356598 eV Total energy + Delta-G solvation = -3026.621185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.62695 -38.37995 -36.64585 -34.88987 -32.38587 -31.65135 -30.48593 -29.40945 -27.37068 -24.64951 -23.54199 -22.55961 -22.22670 -21.73860 -19.89404 -18.49455 -16.74314 -16.68554 -15.87014 -15.71795 -15.01383 -14.79517 -14.38160 -14.15358 -13.77851 -13.47549 -12.91607 -12.84419 -12.69096 -12.26894 -12.02239 -11.91168 -11.77038 -11.52095 -11.16522 -11.07288 -10.96162 -10.88315 -10.72729 -10.50266 -10.34487 -10.28637 -10.22226 -10.06438 -8.90272 -8.55344 -8.29740 -8.08436 -7.41402 -6.29027 -3.94480 1.66133 1.76108 3.18958 3.27665 3.32752 3.72616 3.97333 4.16229 4.27006 4.59385 4.85910 4.95905 4.99065 5.06015 5.13405 5.24898 5.35750 5.39888 5.56869 5.72856 5.74864 5.78074 5.85199 5.91831 6.01317 6.02974 6.09516 6.10967 6.24697 6.32131 6.40299 6.46522 6.54871 6.78595 6.88074 6.90529 7.05233 7.27225 7.35781 7.62188 8.31565 8.56309 9.24165 9.45114 10.07434 10.75288 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025336 B = 0.004248 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.862567 B = 6589.003442 C = 6962.938037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.444 5.444 4 C -0.305 4.305 5 H 0.089 0.911 6 C 0.036 3.964 7 N -0.873 5.873 8 Si 0.917 3.083 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.464 3.536 13 O -0.573 6.573 14 C -0.103 4.103 15 C -0.038 4.038 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.133 4.133 19 C -0.055 4.055 20 C -0.112 4.112 21 C -0.179 4.179 22 C -0.172 4.172 23 C -0.099 4.099 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.109 0.891 29 H 0.267 0.733 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 0.317 -13.959 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.026 4.026 3 N -0.164 5.164 4 C -0.433 4.433 5 H 0.107 0.893 6 C -0.168 4.168 7 N -0.511 5.511 8 Si 0.744 3.256 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.194 1.194 12 C 0.252 3.748 13 O -0.455 6.455 14 C -0.143 4.143 15 C -0.039 4.039 16 C -0.130 4.130 17 C -0.136 4.136 18 C -0.151 4.151 19 C -0.055 4.055 20 C -0.130 4.130 21 C -0.215 4.215 22 C -0.209 4.209 23 C -0.117 4.117 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.126 0.874 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.143 0.739 -13.829 14.014 hybrid contribution 0.019 0.072 1.001 1.004 sum -2.124 0.810 -12.828 13.028 Atomic orbital electron populations 1.22215 0.98314 1.00294 1.01465 1.21527 0.91626 0.85667 1.03777 1.43494 1.56347 1.11878 1.04664 1.19425 1.37459 0.96864 0.89575 0.89344 1.25366 0.94311 0.96590 1.00494 1.69915 1.31611 1.16387 1.33197 0.86071 0.77579 0.79515 0.82425 1.20378 1.21027 1.19366 1.20185 0.82194 0.87988 0.84446 1.90546 1.49439 1.18744 1.86809 1.20776 1.02905 0.97990 0.92658 1.19442 0.93496 0.96370 0.94546 1.20946 0.99067 0.96151 0.96881 1.20963 0.96887 0.98898 0.96843 1.20857 0.93356 0.99847 1.01000 1.18989 0.93409 0.96713 0.96355 1.21024 0.96327 1.04216 0.91410 1.23038 1.02864 0.91817 1.03815 1.22998 1.03188 0.98613 0.96070 1.20760 0.96503 0.98971 0.95470 0.93127 0.92446 0.93954 0.93415 0.87362 0.92328 0.89294 0.89512 0.86534 0.86529 0.86636 0.87031 0.88443 0.88654 0.88703 0.88717 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 10.16 37.16 0.38 -2.56 16 2 C 0.10 2.12 5.43 -4.04 -0.02 2.10 16 3 N -0.44 -11.30 2.53 -114.81 -0.29 -11.59 16 4 C -0.31 -8.55 8.90 -14.93 -0.13 -8.68 16 5 H 0.09 2.61 7.77 -52.49 -0.41 2.20 16 6 C 0.04 0.96 4.95 -17.47 -0.09 0.88 16 7 N -0.87 -23.64 11.44 55.50 0.63 -23.01 16 8 Si 0.92 20.81 29.60 -169.99 -5.03 15.78 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 12 C 0.46 11.49 7.60 -10.99 -0.08 11.40 16 13 O -0.57 -16.41 15.91 5.55 0.09 -16.32 16 14 C -0.10 -1.95 4.44 -29.03 -0.13 -2.08 16 15 C -0.04 -0.70 4.37 -104.62 -0.46 -1.15 16 16 C -0.11 -1.88 9.70 -39.58 -0.38 -2.26 16 17 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 18 C -0.13 -1.91 9.30 -39.58 -0.37 -2.28 16 19 C -0.05 -0.84 5.61 -104.62 -0.59 -1.43 16 20 C -0.11 -1.42 6.04 -91.78 -0.55 -1.98 16 21 C -0.18 -1.86 9.86 -26.73 -0.26 -2.13 16 22 C -0.17 -1.76 10.16 -26.73 -0.27 -2.03 16 23 C -0.10 -1.73 9.39 -39.59 -0.37 -2.10 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.04 0.70 6.69 -51.93 -0.35 0.35 16 27 H 0.05 0.93 6.62 -51.93 -0.34 0.59 16 28 H 0.11 2.59 5.53 -51.93 -0.29 2.30 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.09 1.56 7.34 -51.93 -0.38 1.18 16 31 H 0.09 1.44 6.57 -51.93 -0.34 1.10 16 32 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.12 1.37 6.02 -52.49 -0.32 1.05 16 35 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.10 0.97 6.18 -51.93 -0.32 0.65 16 37 H 0.10 0.88 8.14 -51.92 -0.42 0.45 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -31.82 330.81 -9.03 -40.85 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.69 Total: 5.73 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -3.73 Total: -16.43 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.34 Total: -34.59 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.09 Total: -16.32 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.82 -9.03 -40.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413238223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.327 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds