Wall clock time and date at job start Mon Mar 30 2020 01:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.63046 * 2 1 4 4 C 1.53247 * 109.63198 * 239.60340 * 2 1 3 5 5 N 1.46467 * 109.86006 * 178.29281 * 4 2 1 6 6 C 1.46897 * 111.00271 * 197.76496 * 5 4 2 7 7 C 1.52995 * 109.47552 * 148.64331 * 6 5 4 8 8 C 1.52994 * 109.47182 * 66.09381 * 7 6 5 9 9 C 1.53008 * 109.46869 * 306.09540 * 7 6 5 10 10 C 1.52995 * 109.47576 * 186.09897 * 7 6 5 11 11 C 1.50695 * 109.47261 * 179.97438 * 10 7 6 12 12 H 1.07997 * 120.00031 * 359.97438 * 11 10 7 13 13 C 1.37881 * 120.00076 * 179.97438 * 11 10 7 14 14 N 1.31513 * 120.00081 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00223 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46837 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47064 * 240.00371 * 15 13 11 18 18 H 1.48497 * 109.46788 * 120.00018 * 15 13 11 19 19 C 1.46469 * 112.55839 * 72.65704 * 5 4 2 20 20 C 1.53247 * 109.86168 * 287.34587 * 19 5 4 21 21 S 1.81897 * 109.62798 * 120.59098 * 2 1 3 22 22 O 1.42101 * 109.47001 * 286.85123 * 21 2 1 23 23 H 1.09002 * 109.47641 * 180.39361 * 1 2 3 24 24 H 1.09001 * 109.47241 * 300.39504 * 1 2 3 25 25 H 1.09007 * 109.47289 * 60.39602 * 1 2 3 26 26 H 1.08992 * 109.40760 * 58.17284 * 4 2 1 27 27 H 1.09007 * 109.34142 * 298.36802 * 4 2 1 28 28 H 1.09003 * 109.46744 * 28.64279 * 6 5 4 29 29 H 1.09004 * 109.47479 * 268.64703 * 6 5 4 30 30 H 1.09002 * 109.47675 * 164.44410 * 8 7 6 31 31 H 1.09007 * 109.47444 * 284.44186 * 8 7 6 32 32 H 1.09002 * 109.47496 * 44.44591 * 8 7 6 33 33 H 1.08997 * 109.47543 * 300.00041 * 9 7 6 34 34 H 1.09008 * 109.46743 * 59.99797 * 9 7 6 35 35 H 1.08995 * 109.46882 * 179.97438 * 9 7 6 36 36 H 1.09005 * 109.47216 * 59.99664 * 10 7 6 37 37 H 1.09006 * 109.46730 * 299.99780 * 10 7 6 38 38 H 0.97009 * 119.99919 * 359.97438 * 14 13 11 39 39 H 1.09004 * 109.40665 * 47.46400 * 19 5 4 40 40 H 1.09002 * 109.40728 * 167.22149 * 19 5 4 41 41 H 1.09004 * 109.62975 * 302.29457 * 20 19 5 42 42 H 1.09001 * 109.79861 * 181.80768 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0448 -0.7303 -1.2450 5 7 3.5089 -0.6980 -1.2710 6 6 4.0184 -0.9999 -2.6152 7 6 5.3310 -0.2479 -2.8440 8 6 6.4030 -0.7938 -1.8987 9 6 5.1196 1.2424 -2.5691 10 6 5.7831 -0.4399 -4.2930 11 6 7.0756 0.3013 -4.5184 12 1 7.5291 0.8544 -3.7093 13 6 7.6793 0.2733 -5.7577 14 7 7.1269 -0.3998 -6.7432 15 14 9.2812 1.1927 -6.0374 16 1 9.6913 1.8665 -4.7792 17 1 9.0893 2.2084 -7.1036 18 1 10.3365 0.2336 -6.4515 19 6 4.1083 -1.5847 -0.2711 20 6 3.9229 -0.9908 1.1294 21 16 2.1410 -0.8719 1.4748 22 8 1.9343 -0.0616 2.6237 23 1 -0.3634 -1.0276 0.0071 24 1 -0.3634 0.5200 0.8864 25 1 -0.3634 0.5077 -0.8936 26 1 1.6559 -0.2417 -2.1382 27 1 1.7058 -1.7661 -1.2220 28 1 3.2862 -0.6876 -3.3599 29 1 4.1935 -2.0720 -2.7052 30 1 7.3864 -0.4680 -2.2376 31 1 6.2236 -0.4193 -0.8908 32 1 6.3628 -1.8831 -1.8940 33 1 4.3559 1.6313 -3.2425 34 1 4.7975 1.3792 -1.5367 35 1 6.0548 1.7780 -2.7316 36 1 5.0193 -0.0510 -4.9665 37 1 5.9337 -1.5016 -4.4889 38 1 6.2948 -0.8770 -6.5981 39 1 3.6260 -2.5611 -0.3172 40 1 5.1724 -1.6976 -0.4786 41 1 4.3705 0.0023 1.1683 42 1 4.3972 -1.6353 1.8695 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353810281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:12 Heat of formation + Delta-G solvation = -47.315488 kcal Electronic energy + Delta-G solvation = -20264.521420 eV Core-core repulsion = 17370.751328 eV Total energy + Delta-G solvation = -2893.770092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.150 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.97477 -36.07683 -35.63886 -33.54004 -32.37781 -30.61101 -27.13730 -26.44049 -26.27996 -24.87652 -22.82126 -22.17515 -21.05103 -18.29380 -17.56654 -16.42245 -16.05201 -15.66276 -15.50835 -14.82212 -14.53344 -14.25505 -13.82722 -13.60509 -13.23103 -13.03361 -12.74203 -12.62076 -12.40275 -11.93849 -11.86401 -11.77049 -11.55217 -11.40178 -11.13114 -11.05974 -10.88796 -10.70085 -10.51755 -10.12921 -10.03619 -9.81885 -9.66850 -9.25365 -8.47829 -8.33764 -8.28659 -8.11335 -6.31003 -3.98732 1.48300 2.42630 3.44997 3.48418 3.61349 3.66818 3.83470 4.56626 4.64807 4.81548 4.94582 4.99919 5.07551 5.23064 5.32489 5.42292 5.45691 5.53881 5.64039 5.72141 5.81979 5.84904 5.86275 5.89754 5.98920 6.10901 6.18974 6.40771 6.58134 6.65407 6.75765 7.04089 7.11438 7.16667 7.23824 7.30390 7.42153 7.58370 8.28652 8.52447 8.94211 9.71557 11.09000 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.038141 B = 0.004128 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.934847 B = 6781.467934 C = 7035.494447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.396 4.396 3 H 0.099 0.901 4 C 0.084 3.916 5 N -0.552 5.552 6 C 0.070 3.930 7 C -0.047 4.047 8 C -0.134 4.134 9 C -0.113 4.113 10 C 0.020 3.980 11 C -0.587 4.587 12 H 0.053 0.947 13 C 0.012 3.988 14 N -0.918 5.918 15 Si 1.069 2.931 16 H -0.290 1.290 17 H -0.289 1.289 18 H -0.289 1.289 19 C 0.061 3.939 20 C -0.428 4.428 21 S 1.220 4.780 22 O -0.861 6.861 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.268 0.732 39 H 0.045 0.955 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.781 -5.676 13.213 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.515 4.515 3 H 0.117 0.883 4 C -0.046 4.046 5 N -0.276 5.276 6 C -0.057 4.057 7 C -0.047 4.047 8 C -0.191 4.191 9 C -0.170 4.170 10 C -0.018 4.018 11 C -0.625 4.625 12 H 0.072 0.928 13 C -0.191 4.191 14 N -0.555 5.555 15 Si 0.899 3.101 16 H -0.216 1.216 17 H -0.215 1.215 18 H -0.215 1.215 19 C -0.067 4.067 20 C -0.566 4.566 21 S 1.420 4.580 22 O -0.856 6.856 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.023 0.977 37 H 0.022 0.978 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.006 -5.171 13.026 17.820 hybrid contribution -0.381 0.993 0.647 1.245 sum -11.387 -4.177 13.673 18.278 Atomic orbital electron populations 1.21406 0.91512 1.02624 1.02870 1.27330 1.02371 1.09815 1.11950 0.88272 1.21799 0.87734 0.98442 0.96583 1.61051 1.05492 1.54461 1.06616 1.22330 0.98109 0.98139 0.87081 1.20447 0.91627 0.94961 0.97690 1.21990 1.00817 0.98647 0.97653 1.21565 1.00728 0.95500 0.99220 1.19259 0.96568 0.96094 0.89830 1.22071 1.07962 1.33766 0.98736 0.92834 1.25763 1.03383 0.97219 0.92704 1.70724 1.20183 1.30813 1.33813 0.83535 0.75297 0.76031 0.75272 1.21592 1.21504 1.21506 1.22106 1.03274 0.92860 0.88475 1.27534 1.19168 1.07158 1.02769 1.70236 0.90407 1.14553 0.82836 1.93091 1.80951 1.72509 1.39059 0.91492 0.92258 0.91406 0.89952 0.93538 0.91488 0.94343 0.91256 0.93912 0.94391 0.94588 0.93830 0.92722 0.97733 0.97820 0.92164 0.93695 0.87624 0.88658 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 9.23 37.15 0.34 -0.69 16 2 C -0.40 -4.08 3.32 -26.61 -0.09 -4.17 16 3 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 4 C 0.08 0.86 4.69 -3.93 -0.02 0.84 16 5 N -0.55 -7.12 3.23 -235.04 -0.76 -7.88 16 6 C 0.07 1.09 4.24 -3.83 -0.02 1.07 16 7 C -0.05 -0.90 0.61 -154.51 -0.09 -0.99 16 8 C -0.13 -2.44 6.88 37.15 0.26 -2.18 16 9 C -0.11 -2.20 7.93 37.16 0.29 -1.90 16 10 C 0.02 0.48 3.35 -27.89 -0.09 0.39 16 11 C -0.59 -15.95 7.43 -34.44 -0.26 -16.21 16 12 H 0.05 1.45 5.80 -52.49 -0.30 1.15 16 13 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 14 N -0.92 -27.76 13.65 55.43 0.76 -27.00 16 15 Si 1.07 25.31 29.90 -169.99 -5.08 20.23 16 16 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 C 0.06 0.68 4.72 -3.93 -0.02 0.66 16 20 C -0.43 -4.56 6.67 37.29 0.25 -4.31 16 21 S 1.22 12.24 13.19 -107.50 -1.42 10.82 16 22 O -0.86 -14.09 18.14 -35.23 -0.64 -14.73 16 23 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.89 7.55 -51.93 -0.39 0.50 16 27 H 0.05 0.36 7.91 -51.93 -0.41 -0.05 16 28 H 0.07 1.05 7.41 -51.93 -0.38 0.66 16 29 H 0.04 0.58 7.75 -51.93 -0.40 0.17 16 30 H 0.07 1.44 6.27 -51.93 -0.33 1.11 16 31 H 0.04 0.70 6.57 -51.93 -0.34 0.36 16 32 H 0.04 0.63 7.28 -51.93 -0.38 0.25 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.78 7.45 -51.92 -0.39 0.40 16 35 H 0.05 1.17 6.62 -51.93 -0.34 0.82 16 36 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 37 H 0.00 0.09 8.01 -51.93 -0.42 -0.32 16 38 H 0.27 8.05 7.22 -40.82 -0.29 7.75 16 39 H 0.04 0.38 7.91 -51.93 -0.41 -0.03 16 40 H 0.11 1.32 3.99 -51.93 -0.21 1.11 16 41 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -34.44 326.69 -8.93 -43.37 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.17 Total: -2.50 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 0.46 Total: -27.23 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.00 Total: -34.88 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.64 Total: -14.73 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Atomic # 16 Polarization: 12.24 SS G_CDS: -1.42 Total: 10.82 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.44 -8.93 -43.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353810281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.948 kcal (2) G-P(sol) polarization free energy of solvation -34.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds