Wall clock time and date at job start Mon Mar 30 2020 01:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.63046 * 2 1 4 4 C 1.53247 * 109.63198 * 239.60340 * 2 1 3 5 5 N 1.46467 * 109.86006 * 178.29281 * 4 2 1 6 6 C 1.46897 * 111.00271 * 197.76496 * 5 4 2 7 7 C 1.52995 * 109.47552 * 148.64331 * 6 5 4 8 8 C 1.52994 * 109.47182 * 66.09381 * 7 6 5 9 9 C 1.53008 * 109.46869 * 306.09540 * 7 6 5 10 10 C 1.52995 * 109.47576 * 186.09897 * 7 6 5 11 11 C 1.50695 * 109.47261 * 179.97438 * 10 7 6 12 12 H 1.07997 * 120.00031 * 359.97438 * 11 10 7 13 13 C 1.37881 * 120.00076 * 179.97438 * 11 10 7 14 14 N 1.31513 * 120.00081 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00223 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46837 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47064 * 240.00371 * 15 13 11 18 18 H 1.48497 * 109.46788 * 120.00018 * 15 13 11 19 19 C 1.46469 * 112.55839 * 72.65704 * 5 4 2 20 20 C 1.53247 * 109.86168 * 287.34587 * 19 5 4 21 21 S 1.81897 * 109.62798 * 120.59098 * 2 1 3 22 22 O 1.42101 * 109.47001 * 286.85123 * 21 2 1 23 23 H 1.09002 * 109.47641 * 180.39361 * 1 2 3 24 24 H 1.09001 * 109.47241 * 300.39504 * 1 2 3 25 25 H 1.09007 * 109.47289 * 60.39602 * 1 2 3 26 26 H 1.08992 * 109.40760 * 58.17284 * 4 2 1 27 27 H 1.09007 * 109.34142 * 298.36802 * 4 2 1 28 28 H 1.09003 * 109.46744 * 28.64279 * 6 5 4 29 29 H 1.09004 * 109.47479 * 268.64703 * 6 5 4 30 30 H 1.09002 * 109.47675 * 164.44410 * 8 7 6 31 31 H 1.09007 * 109.47444 * 284.44186 * 8 7 6 32 32 H 1.09002 * 109.47496 * 44.44591 * 8 7 6 33 33 H 1.08997 * 109.47543 * 300.00041 * 9 7 6 34 34 H 1.09008 * 109.46743 * 59.99797 * 9 7 6 35 35 H 1.08995 * 109.46882 * 179.97438 * 9 7 6 36 36 H 1.09005 * 109.47216 * 59.99664 * 10 7 6 37 37 H 1.09006 * 109.46730 * 299.99780 * 10 7 6 38 38 H 0.97009 * 119.99919 * 359.97438 * 14 13 11 39 39 H 1.09004 * 109.40665 * 47.46400 * 19 5 4 40 40 H 1.09002 * 109.40728 * 167.22149 * 19 5 4 41 41 H 1.09004 * 109.62975 * 302.29457 * 20 19 5 42 42 H 1.09001 * 109.79861 * 181.80768 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0448 -0.7303 -1.2450 5 7 3.5089 -0.6980 -1.2710 6 6 4.0184 -0.9999 -2.6152 7 6 5.3310 -0.2479 -2.8440 8 6 6.4030 -0.7938 -1.8987 9 6 5.1196 1.2424 -2.5691 10 6 5.7831 -0.4399 -4.2930 11 6 7.0756 0.3013 -4.5184 12 1 7.5291 0.8544 -3.7093 13 6 7.6793 0.2733 -5.7577 14 7 7.1269 -0.3998 -6.7432 15 14 9.2812 1.1927 -6.0374 16 1 9.6913 1.8665 -4.7792 17 1 9.0893 2.2084 -7.1036 18 1 10.3365 0.2336 -6.4515 19 6 4.1083 -1.5847 -0.2711 20 6 3.9229 -0.9908 1.1294 21 16 2.1410 -0.8719 1.4748 22 8 1.9343 -0.0616 2.6237 23 1 -0.3634 -1.0276 0.0071 24 1 -0.3634 0.5200 0.8864 25 1 -0.3634 0.5077 -0.8936 26 1 1.6559 -0.2417 -2.1382 27 1 1.7058 -1.7661 -1.2220 28 1 3.2862 -0.6876 -3.3599 29 1 4.1935 -2.0720 -2.7052 30 1 7.3864 -0.4680 -2.2376 31 1 6.2236 -0.4193 -0.8908 32 1 6.3628 -1.8831 -1.8940 33 1 4.3559 1.6313 -3.2425 34 1 4.7975 1.3792 -1.5367 35 1 6.0548 1.7780 -2.7316 36 1 5.0193 -0.0510 -4.9665 37 1 5.9337 -1.5016 -4.4889 38 1 6.2948 -0.8770 -6.5981 39 1 3.6260 -2.5611 -0.3172 40 1 5.1724 -1.6976 -0.4786 41 1 4.3705 0.0023 1.1683 42 1 4.3972 -1.6353 1.8695 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353810281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:11 Heat of formation + Delta-G solvation = -71.047457 kcal Electronic energy + Delta-G solvation = -20265.550515 eV Core-core repulsion = 17370.751328 eV Total energy + Delta-G solvation = -2894.799188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.15366 -37.46526 -36.77805 -34.84200 -33.96505 -31.63059 -28.74076 -28.11389 -27.46952 -26.17828 -24.56020 -23.08492 -22.00698 -19.92616 -18.46085 -18.42116 -17.05949 -16.67536 -16.44438 -16.02747 -15.72195 -15.56654 -15.30894 -15.16965 -14.52188 -14.30044 -13.93751 -13.66862 -13.48196 -13.39343 -13.16118 -12.93265 -12.79048 -12.76654 -12.49975 -12.33698 -12.24608 -12.14649 -12.01051 -11.94835 -11.53693 -11.38215 -11.00724 -10.64534 -10.47177 -10.40784 -9.26600 -9.13341 -8.57898 -6.25315 0.65616 1.52018 1.59722 1.60584 1.76156 2.58055 2.75642 2.87964 3.24313 3.79999 3.95211 4.03831 4.08667 4.18225 4.29028 4.31095 4.34271 4.49189 4.65891 4.69917 4.77277 4.82510 4.87530 4.92835 4.94267 4.99090 5.05225 5.07382 5.13508 5.17949 5.24279 5.37001 5.39648 5.51115 5.63879 5.74487 6.05913 6.20572 6.30468 6.31672 6.72051 7.52640 8.82683 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.038141 B = 0.004128 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.934847 B = 6781.467934 C = 7035.494447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.393 4.393 3 H 0.068 0.932 4 C 0.082 3.918 5 N -0.569 5.569 6 C 0.083 3.917 7 C -0.046 4.046 8 C -0.125 4.125 9 C -0.102 4.102 10 C 0.025 3.975 11 C -0.589 4.589 12 H 0.051 0.949 13 C -0.042 4.042 14 N -0.946 5.946 15 Si 1.113 2.887 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.280 1.280 19 C 0.057 3.943 20 C -0.427 4.427 21 S 1.283 4.717 22 O -0.925 6.925 23 H 0.100 0.900 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.027 0.973 34 H 0.059 0.941 35 H 0.029 0.971 36 H -0.019 1.019 37 H -0.012 1.012 38 H 0.256 0.744 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.426 -6.903 14.358 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.513 4.513 3 H 0.086 0.914 4 C -0.046 4.046 5 N -0.294 5.294 6 C -0.044 4.044 7 C -0.047 4.047 8 C -0.182 4.182 9 C -0.160 4.160 10 C -0.013 4.013 11 C -0.627 4.627 12 H 0.069 0.931 13 C -0.239 4.239 14 N -0.585 5.585 15 Si 0.936 3.064 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.206 1.206 19 C -0.071 4.071 20 C -0.566 4.566 21 S 1.484 4.516 22 O -0.920 6.920 23 H 0.119 0.881 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.048 0.952 36 H -0.001 1.001 37 H 0.006 0.994 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.670 -6.399 14.203 19.464 hybrid contribution -0.204 1.384 0.288 1.429 sum -11.874 -5.014 14.492 19.395 Atomic orbital electron populations 1.21478 0.89776 1.04797 1.02544 1.27323 1.03933 1.08034 1.11999 0.91361 1.21888 0.85943 1.00619 0.96168 1.60867 1.07300 1.55756 1.05431 1.21998 0.95797 0.97938 0.88705 1.20366 0.94319 0.95446 0.94551 1.21893 0.98452 0.99651 0.98161 1.21452 0.99086 0.95514 0.99913 1.19170 0.94869 0.94313 0.92927 1.22431 1.08809 1.33049 0.98434 0.93068 1.27155 1.06249 0.97551 0.92925 1.70854 1.20366 1.32601 1.34676 0.82964 0.72060 0.75321 0.76016 1.19826 1.20966 1.20620 1.22181 1.02936 0.94328 0.87660 1.27552 1.19303 1.06224 1.03498 1.69439 0.89052 1.12417 0.80646 1.92975 1.82277 1.74024 1.42763 0.88109 0.93389 0.91018 0.90411 0.89618 0.91867 0.93246 0.94429 0.91920 0.92793 0.95372 0.92239 0.95233 1.00071 0.99418 0.93495 0.89762 0.88819 0.91382 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.23 71.98 0.66 -1.12 16 2 C -0.39 -7.29 3.32 30.68 0.10 -7.18 16 3 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.08 1.44 4.69 86.47 0.41 1.84 16 5 N -0.57 -13.20 3.23 -897.54 -2.89 -16.10 16 6 C 0.08 2.42 4.24 86.30 0.37 2.79 16 7 C -0.05 -1.75 0.61 -52.18 -0.03 -1.78 16 8 C -0.12 -4.40 6.88 71.98 0.50 -3.90 16 9 C -0.10 -3.99 7.93 71.98 0.57 -3.42 16 10 C 0.02 1.22 3.35 29.84 0.10 1.32 16 11 C -0.59 -32.56 7.43 25.60 0.19 -32.37 16 12 H 0.05 2.81 5.80 -2.91 -0.02 2.79 16 13 C -0.04 -2.42 5.46 84.66 0.46 -1.96 16 14 N -0.95 -58.33 13.65 21.45 0.29 -58.04 16 15 Si 1.11 51.02 29.90 68.60 2.05 53.07 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 19 C 0.06 1.06 4.72 86.47 0.41 1.47 16 20 C -0.43 -7.97 6.67 72.06 0.48 -7.49 16 21 S 1.28 22.74 13.19 -56.49 -0.74 22.00 16 22 O -0.92 -29.45 18.14 -148.98 -2.70 -32.15 16 23 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.08 1.48 7.55 -2.39 -0.02 1.46 16 27 H 0.09 0.89 7.91 -2.38 -0.02 0.87 16 28 H 0.06 1.89 7.41 -2.39 -0.02 1.87 16 29 H 0.05 1.34 7.75 -2.38 -0.02 1.32 16 30 H 0.04 1.54 6.27 -2.39 -0.01 1.53 16 31 H 0.06 1.95 6.57 -2.38 -0.02 1.93 16 32 H 0.05 1.70 7.28 -2.39 -0.02 1.69 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 2.10 7.45 -2.38 -0.02 2.09 16 35 H 0.03 1.26 6.62 -2.39 -0.02 1.24 16 36 H -0.02 -1.02 8.01 -2.38 -0.02 -1.04 16 37 H -0.01 -0.65 8.01 -2.38 -0.02 -0.67 16 38 H 0.26 15.86 7.22 -92.70 -0.67 15.19 16 39 H 0.08 0.97 7.91 -2.39 -0.02 0.95 16 40 H 0.09 2.02 3.99 -2.39 -0.01 2.01 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -76.95 326.69 1.29 -75.66 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 1.08 Total: 7.36 kcal Atomic # 6 Polarization: -56.01 SS G_CDS: 4.21 Total: -51.80 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -2.60 Total: -74.13 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -2.70 Total: -32.15 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Atomic # 16 Polarization: 22.74 SS G_CDS: -0.74 Total: 22.00 kcal Total: -76.95 1.29 -75.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353810281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.608 kcal (2) G-P(sol) polarization free energy of solvation -76.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds