Wall clock time and date at job start Mon Mar 30 2020 01:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00076 * 2 1 4 4 H 1.48507 * 109.47178 * 240.00279 * 3 2 1 5 5 H 1.48505 * 109.47098 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47269 * 119.99955 * 3 2 1 7 7 C 1.37881 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00257 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99926 * 0.02562 * 7 2 1 10 10 O 1.42893 * 109.46963 * 180.02562 * 9 7 2 11 11 C 1.35961 * 116.99671 * 180.02562 * 10 9 7 12 12 C 1.38647 * 120.05828 * 0.02562 * 11 10 9 13 13 C 1.38262 * 119.95681 * 179.97438 * 12 11 10 14 14 Br 1.89104 * 119.96143 * 179.97438 * 13 12 11 15 15 C 1.38348 * 120.08112 * 0.02562 * 13 12 11 16 16 C 1.38251 * 120.11034 * 359.95622 * 15 13 12 17 17 C 1.38333 * 120.04295 * 0.04578 * 16 15 13 18 18 F 1.35099 * 120.03880 * 180.25794 * 17 16 15 19 19 H 0.97003 * 119.99813 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47047 * 59.99577 * 9 7 2 21 21 H 1.09007 * 109.46658 * 300.00112 * 9 7 2 22 22 H 1.07995 * 120.02110 * 359.95748 * 12 11 10 23 23 H 1.07995 * 119.94544 * 180.02562 * 15 13 12 24 24 H 1.08000 * 119.97849 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0017 11 6 1.6600 -4.8416 0.0014 12 6 0.2856 -5.0247 -0.0007 13 6 -0.2406 -6.3032 -0.0016 14 35 -2.1151 -6.5530 -0.0037 15 6 0.6025 -7.4001 0.0000 16 6 1.9734 -7.2212 0.0017 17 6 2.5051 -5.9441 0.0027 18 9 3.8447 -5.7693 -0.0010 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8904 22 1 -0.3734 -4.1691 -0.0013 23 1 0.1891 -8.3978 -0.0011 24 1 2.6296 -8.0789 0.0026 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095738535.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:31 Heat of formation + Delta-G solvation = -64.898781 kcal Electronic energy + Delta-G solvation = -13207.322940 eV Core-core repulsion = 10467.640736 eV Total energy + Delta-G solvation = -2739.682204 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 273.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.50025 -39.48690 -36.99545 -33.02818 -31.92958 -30.10385 -28.91423 -27.47339 -23.81225 -21.99369 -21.70410 -17.95262 -16.84427 -16.58232 -16.06018 -15.63528 -14.84552 -14.47902 -14.33594 -14.10921 -13.41885 -12.75026 -12.61494 -12.17969 -11.59069 -11.17806 -11.12430 -10.96710 -10.71397 -10.27510 -10.21656 -10.16714 -9.42296 -8.70747 -8.63722 -7.76772 -6.31270 -4.35957 1.06397 1.41860 1.66986 3.23400 3.26322 3.29349 3.61851 3.86511 4.29889 4.53243 4.82454 5.05979 5.12979 5.26874 5.66394 5.80512 6.10085 6.18200 6.28610 6.66158 6.83395 6.99478 7.57855 7.83308 8.21414 8.73833 9.29487 10.79707 Molecular weight = 273.97amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.005909 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.984316 B = 4737.473129 C = 6007.312129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.916 3.084 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.072 0.928 9 C 0.190 3.810 10 O -0.302 6.302 11 C 0.130 3.870 12 C -0.161 4.161 13 C -0.059 4.059 14 Br -0.051 7.051 15 C -0.122 4.122 16 C -0.114 4.114 17 C 0.065 3.935 18 F -0.131 7.131 19 H 0.269 0.731 20 H 0.026 0.974 21 H 0.026 0.974 22 H 0.153 0.847 23 H 0.137 0.863 24 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 -15.006 -0.002 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.090 0.910 9 C 0.117 3.883 10 O -0.214 6.214 11 C 0.079 3.921 12 C -0.182 4.182 13 C -0.139 4.139 14 Br 0.034 6.966 15 C -0.143 4.143 16 C -0.133 4.133 17 C 0.045 3.955 18 F -0.109 7.109 19 H 0.079 0.921 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.171 0.829 23 H 0.155 0.845 24 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.008 -14.862 -0.004 15.392 hybrid contribution 0.692 1.035 0.000 1.245 sum -3.316 -13.827 -0.004 14.219 Atomic orbital electron populations 1.69934 1.06126 1.27923 1.49054 1.24936 0.95085 0.99582 0.94467 0.86264 0.79267 0.81176 0.79079 1.19778 1.20910 1.19772 1.20896 0.94337 0.88448 1.52894 0.91006 1.20810 0.88657 0.81560 0.97224 1.86247 1.38789 1.10950 1.85430 1.19189 0.91028 0.86991 0.94872 1.21312 0.94254 0.97390 1.05229 1.21525 0.90354 0.95413 1.06561 1.96681 1.04792 1.97456 1.97669 1.20670 0.91877 0.97970 1.03743 1.20854 0.95502 0.94996 1.01988 1.17131 0.77214 0.92167 1.09017 1.91491 1.29112 1.96182 1.94142 0.92127 0.95642 0.95647 0.82912 0.84492 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 13.29 55.43 0.74 -24.68 14 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 14 3 Si 0.92 21.07 29.54 -169.99 -5.02 16.05 14 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 14 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 14 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 14 7 C -0.53 -14.91 9.43 -34.44 -0.32 -15.23 14 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 14 9 C 0.19 4.94 4.49 36.01 0.16 5.10 14 10 O -0.30 -7.27 9.99 -19.62 -0.20 -7.46 14 11 C 0.13 2.60 6.69 -39.18 -0.26 2.33 14 12 C -0.16 -2.93 8.78 -39.42 -0.35 -3.28 14 13 C -0.06 -0.89 6.22 -39.53 -0.25 -1.14 14 14 Br -0.05 -0.69 33.70 -68.01 -2.29 -2.98 14 15 C -0.12 -1.59 9.78 -39.54 -0.39 -1.98 14 16 C -0.11 -1.53 10.02 -39.54 -0.40 -1.93 14 17 C 0.07 1.14 7.31 -39.30 -0.29 0.85 14 18 F -0.13 -2.40 17.11 2.25 0.04 -2.36 14 19 H 0.27 7.19 8.31 -40.82 -0.34 6.85 14 20 H 0.03 0.68 7.66 -51.93 -0.40 0.28 14 21 H 0.03 0.68 7.67 -51.93 -0.40 0.28 14 22 H 0.15 2.95 6.30 -52.49 -0.33 2.62 14 23 H 0.14 1.38 8.06 -52.49 -0.42 0.95 14 24 H 0.14 1.46 8.06 -52.49 -0.42 1.04 14 LS Contribution 246.99 15.07 3.72 3.72 Total: -1.00 -28.54 246.99 -6.71 -35.26 By element: Atomic # 1 Polarization: -2.36 SS G_CDS: -1.52 Total: -3.88 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.18 Total: -13.66 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.74 Total: -24.68 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.20 Total: -7.46 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.29 Total: -2.98 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.54 -6.71 -35.26 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095738535.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.641 kcal (2) G-P(sol) polarization free energy of solvation -28.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds