Wall clock time and date at job start Mon Mar 30 2020 01:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46499 * 2 1 4 4 C 1.53003 * 109.46838 * 240.00001 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00165 * 4 2 1 6 6 H 1.07998 * 120.00074 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99467 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99869 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00123 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47396 * 90.00009 * 9 7 5 11 11 H 1.48506 * 109.47206 * 210.00132 * 9 7 5 12 12 H 1.48506 * 109.47312 * 329.99806 * 9 7 5 13 13 C 1.52994 * 109.46799 * 120.00339 * 2 1 3 14 14 N 1.46901 * 109.47412 * 295.61566 * 13 2 1 15 15 C 1.47908 * 111.00159 * 294.35533 * 14 13 2 16 16 C 1.53992 * 107.05735 * 214.15197 * 15 14 13 17 17 C 1.54599 * 105.13940 * 1.22170 * 16 15 14 18 18 C 1.48530 * 111.00342 * 176.95443 * 14 13 2 19 19 H 1.08995 * 110.66637 * 41.29036 * 18 14 13 20 20 C 1.50699 * 110.66750 * 278.15823 * 18 14 13 21 21 C 1.38237 * 120.00043 * 319.72390 * 20 18 14 22 22 C 1.38232 * 120.00001 * 179.78817 * 21 20 18 23 23 C 1.38235 * 120.00210 * 0.46284 * 22 21 20 24 24 C 1.38239 * 119.99821 * 359.77288 * 23 22 21 25 25 C 1.38235 * 119.99834 * 0.02562 * 24 23 22 26 26 H 1.08999 * 109.47169 * 304.83007 * 1 2 3 27 27 H 1.09001 * 109.47209 * 64.83252 * 1 2 3 28 28 H 1.09004 * 109.46905 * 184.82969 * 1 2 3 29 29 H 1.09007 * 109.46585 * 184.99716 * 4 2 1 30 30 H 1.09000 * 109.47258 * 305.00345 * 4 2 1 31 31 H 0.96994 * 120.00259 * 180.02562 * 8 7 5 32 32 H 1.09008 * 109.47140 * 175.62094 * 13 2 1 33 33 H 1.09002 * 109.47489 * 55.61789 * 13 2 1 34 34 H 1.09003 * 109.91107 * 333.50301 * 15 14 13 35 35 H 1.09000 * 109.91529 * 94.79724 * 15 14 13 36 36 H 1.09003 * 110.30650 * 120.13843 * 16 15 14 37 37 H 1.08995 * 110.31136 * 242.30612 * 16 15 14 38 38 H 1.09005 * 110.72215 * 140.31261 * 17 16 15 39 39 H 1.08997 * 110.72537 * 263.42059 * 17 16 15 40 40 H 1.08003 * 119.99691 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.99935 * 180.25479 * 22 21 20 42 42 H 1.07998 * 120.00238 * 179.78691 * 23 22 21 43 43 H 1.07995 * 120.00046 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.99834 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3756 7 6 1.9932 -0.4017 -3.7283 8 7 1.6448 0.2773 -4.7994 9 14 2.9634 -1.9883 -3.9028 10 1 2.0242 -3.1326 -4.0201 11 1 3.8125 -1.9181 -5.1192 12 1 3.8251 -2.1757 -2.7079 13 6 2.0400 -0.7213 1.2492 14 7 1.6386 0.0295 2.4463 15 6 2.3070 1.3481 2.4939 16 6 2.5719 1.6671 3.9769 17 6 2.0433 0.4399 4.7545 18 6 2.0538 -0.6797 3.6836 19 1 3.0552 -1.0952 3.5712 20 6 1.0642 -1.7607 4.0345 21 6 -0.2911 -1.5312 3.8878 22 6 -1.1986 -2.5243 4.2055 23 6 -0.7514 -3.7436 4.6791 24 6 0.6037 -3.9714 4.8304 25 6 1.5114 -2.9798 4.5087 26 1 -0.3633 0.5869 0.8435 27 1 -0.3634 0.4370 -0.9301 28 1 -0.3633 -1.0241 0.0865 29 1 3.1264 -0.7994 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 1.8920 -0.0456 -5.6800 32 1 3.1272 -0.7898 1.2109 33 1 1.6139 -1.7238 1.2893 34 1 3.2500 1.3062 1.9488 35 1 1.6580 2.1091 2.0605 36 1 3.6403 1.7942 4.1515 37 1 2.0299 2.5650 4.2735 38 1 2.7097 0.1901 5.5802 39 1 1.0317 0.6201 5.1181 40 1 -0.6406 -0.5773 3.5212 41 1 -2.2572 -2.3464 4.0870 42 1 -1.4606 -4.5183 4.9306 43 1 0.9530 -4.9238 5.2008 44 1 2.5700 -3.1576 4.6274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602434187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:51 Heat of formation + Delta-G solvation = 11.699197 kcal Electronic energy + Delta-G solvation = -21264.726612 eV Core-core repulsion = 18373.904731 eV Total energy + Delta-G solvation = -2890.821880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.91417 -38.18104 -35.40757 -32.45869 -31.87394 -30.84807 -30.73597 -27.69444 -27.32912 -25.35714 -23.05489 -22.50147 -22.11205 -20.89796 -19.97684 -18.63499 -16.99109 -16.78547 -15.98217 -15.57712 -14.79503 -14.54485 -14.28857 -13.98810 -13.80854 -13.40436 -13.17666 -12.99175 -12.74584 -12.61603 -12.24528 -12.06968 -11.75422 -11.56141 -11.31666 -11.14965 -11.00530 -10.91603 -10.77858 -10.65157 -10.54617 -10.39957 -9.70956 -9.69222 -9.37814 -9.02810 -8.85973 -8.63058 -8.48907 -8.19115 -5.99536 -3.95995 1.37791 1.47415 3.33270 3.40416 3.44294 3.78452 4.13793 4.49218 4.62840 4.74325 4.92744 4.95757 5.02863 5.05312 5.21271 5.31265 5.34259 5.47494 5.56213 5.61274 5.66683 5.74030 5.78970 5.80973 5.95487 6.03632 6.07011 6.09243 6.14499 6.19990 6.36086 6.44033 6.49190 6.57475 6.62546 6.70067 6.89236 7.01779 7.06681 7.14489 7.23600 7.31378 7.39693 7.53070 7.85905 8.60464 9.06392 9.63735 11.13972 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.004783 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.562005 B = 5852.733337 C = 6594.690806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.070 4.070 3 H 0.061 0.939 4 C -0.009 4.009 5 C -0.510 4.510 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.052 3.948 14 N -0.503 5.503 15 C 0.037 3.963 16 C -0.131 4.131 17 C -0.111 4.111 18 C 0.099 3.901 19 H 0.057 0.943 20 C -0.066 4.066 21 C -0.084 4.084 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.126 4.126 25 C -0.119 4.119 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.011 0.989 30 H 0.010 0.990 31 H 0.262 0.738 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.631 -3.636 22.354 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.089 4.089 3 H 0.079 0.921 4 C -0.047 4.047 5 C -0.548 4.548 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.076 4.076 14 N -0.227 5.227 15 C -0.091 4.091 16 C -0.169 4.169 17 C -0.149 4.149 18 C -0.009 4.009 19 H 0.075 0.925 20 C -0.066 4.066 21 C -0.102 4.102 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.138 4.138 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.174 -3.569 22.112 22.429 hybrid contribution 1.463 -1.092 -0.397 1.868 sum 0.289 -4.660 21.715 22.212 Atomic orbital electron populations 1.21584 0.95298 1.00318 1.00804 1.20990 0.96316 0.99031 0.92561 0.92105 1.19616 0.95617 0.95915 0.93586 1.21127 1.35110 1.09544 0.89064 0.90825 1.25018 0.95680 0.96873 0.95964 1.69914 1.47285 1.39337 0.97975 0.86822 0.80677 0.84485 0.77541 1.20365 1.21505 1.19182 1.22505 0.97259 0.97745 0.90083 1.64708 1.54620 1.02316 1.01067 1.22839 0.98004 0.92622 0.95666 1.22427 1.00815 0.98444 0.95228 1.22492 1.01891 0.93817 0.96719 1.21642 0.95107 0.92864 0.91314 0.92496 1.19632 0.94374 0.94000 0.98629 1.21071 0.92303 0.99660 0.97198 1.21196 0.99670 0.93793 0.99689 1.21112 0.95638 0.97298 1.00337 1.21029 0.93398 0.98854 1.01105 1.21006 0.99404 0.93226 1.00127 0.93907 0.92132 0.94356 0.97079 0.97131 0.92866 0.95367 0.91282 0.93482 0.90028 0.91753 0.91065 0.91379 0.90627 0.85103 0.86301 0.86562 0.86497 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.90 37.16 0.33 -2.06 16 2 C -0.07 -1.41 2.29 -90.62 -0.21 -1.61 16 3 H 0.06 1.25 7.21 -51.93 -0.37 0.88 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.58 8.89 -34.44 -0.31 -14.89 16 6 H 0.07 2.25 7.32 -52.49 -0.38 1.87 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.91 -28.21 13.96 55.43 0.77 -27.44 16 9 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 13 C 0.05 0.88 4.07 -3.83 -0.02 0.86 16 14 N -0.50 -7.18 3.84 -223.99 -0.86 -8.04 16 15 C 0.04 0.48 5.53 -2.75 -0.02 0.46 16 16 C -0.13 -1.35 6.93 -25.37 -0.18 -1.52 16 17 C -0.11 -1.15 6.47 -24.87 -0.16 -1.31 16 18 C 0.10 1.22 2.49 -66.94 -0.17 1.06 16 19 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 20 C -0.07 -0.82 4.73 -104.62 -0.49 -1.32 16 21 C -0.08 -1.06 9.12 -39.58 -0.36 -1.42 16 22 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 24 C -0.13 -1.36 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.38 9.69 -39.58 -0.38 -1.76 16 26 H 0.04 0.75 7.87 -51.93 -0.41 0.34 16 27 H 0.06 1.32 6.82 -51.93 -0.35 0.96 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 30 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.03 0.48 7.94 -51.92 -0.41 0.07 16 33 H 0.07 1.22 7.90 -51.93 -0.41 0.81 16 34 H 0.05 0.66 7.64 -51.93 -0.40 0.26 16 35 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 40 H 0.13 1.70 7.77 -52.48 -0.41 1.30 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 44 H 0.12 1.16 8.04 -52.49 -0.42 0.74 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -30.55 346.47 -10.58 -41.13 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.70 Total: -1.01 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -3.34 Total: -27.36 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.09 Total: -35.47 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.55 -10.58 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602434187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.831 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds