Wall clock time and date at job start Mon Mar 30 2020 01:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.46704 * 2 1 4 4 C 1.53001 * 109.46855 * 239.99996 * 2 1 3 5 5 C 1.50703 * 109.47012 * 65.00264 * 4 2 1 6 6 H 1.07998 * 119.99974 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00187 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99776 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46960 * 59.99855 * 9 7 5 11 11 H 1.48496 * 109.46998 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47155 * 299.99692 * 9 7 5 13 13 C 1.52995 * 109.47130 * 120.00342 * 2 1 3 14 14 N 1.46906 * 109.46978 * 294.99913 * 13 2 1 15 15 C 1.46901 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 14 13 17 17 H 1.08998 * 110.26671 * 305.69565 * 16 15 14 18 18 C 1.54350 * 110.29938 * 183.62708 * 16 15 14 19 19 C 1.54605 * 102.27119 * 267.38973 * 18 16 15 20 20 C 1.51371 * 105.18441 * 333.64596 * 19 18 16 21 21 C 1.38500 * 130.38492 * 197.20264 * 20 19 18 22 22 C 1.38109 * 120.21392 * 179.97438 * 21 20 19 23 23 C 1.38256 * 119.93226 * 0.02562 * 22 21 20 24 24 C 1.38108 * 119.93298 * 359.97438 * 23 22 21 25 25 C 1.38213 * 109.76129 * 17.20408 * 20 19 18 26 26 H 1.08994 * 109.46704 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46753 * 299.99894 * 1 2 3 28 28 H 1.08994 * 109.47203 * 59.99889 * 1 2 3 29 29 H 1.09004 * 109.46816 * 184.99631 * 4 2 1 30 30 H 1.08993 * 109.47518 * 305.00266 * 4 2 1 31 31 H 0.96999 * 120.00038 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.46859 * 175.00205 * 13 2 1 33 33 H 1.09002 * 109.47639 * 54.99873 * 13 2 1 34 34 H 1.00899 * 110.99995 * 56.04730 * 14 13 2 35 35 H 1.09002 * 109.47401 * 59.99808 * 15 14 13 36 36 H 1.09001 * 109.46874 * 299.99821 * 15 14 13 37 37 H 1.09002 * 110.82451 * 25.64507 * 18 16 15 38 38 H 1.09001 * 110.81716 * 149.19998 * 18 16 15 39 39 H 1.09001 * 110.28472 * 214.72446 * 19 18 16 40 40 H 1.08997 * 110.30473 * 92.57918 * 19 18 16 41 41 H 1.07994 * 119.89826 * 359.97438 * 21 20 19 42 42 H 1.07999 * 120.03547 * 180.02562 * 22 21 20 43 43 H 1.07995 * 120.03468 * 180.02562 * 23 22 21 44 44 H 1.08005 * 119.88864 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5182 -3.8512 9 14 1.4984 0.5629 -5.2497 10 1 2.0895 1.9237 -5.1870 11 1 1.9945 -0.1364 -6.4621 12 1 0.0184 0.6683 -5.3093 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6267 3.6671 16 6 1.7024 0.1907 4.8892 17 1 2.0444 1.2210 4.7912 18 6 2.2686 -0.4412 6.1785 19 6 1.1152 -1.3697 6.6233 20 6 -0.1392 -0.7466 6.0492 21 6 -1.4706 -0.9483 6.3732 22 6 -2.4612 -0.2563 5.7044 23 6 -2.1236 0.6405 4.7078 24 6 -0.7965 0.8429 4.3834 25 6 0.1982 0.1499 5.0529 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 3.1264 -0.7994 -1.2056 30 1 1.6054 -1.7197 -1.2952 31 1 2.9251 -1.8407 -4.7318 32 1 3.1263 -0.7995 1.2055 33 1 1.6055 -1.7199 1.2951 34 1 0.6529 0.1792 2.4753 35 1 3.2128 -0.7039 3.6400 36 1 1.6921 -1.6247 3.7299 37 1 3.1700 -1.0158 5.9649 38 1 2.4639 0.3228 6.9310 39 1 1.0563 -1.4046 7.7112 40 1 1.2589 -2.3717 6.2191 41 1 -1.7350 -1.6489 7.1513 42 1 -3.4984 -0.4155 5.9597 43 1 -2.8969 1.1828 4.1840 44 1 -0.5337 1.5439 3.6049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602559852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:26 Heat of formation + Delta-G solvation = -3.953700 kcal Electronic energy + Delta-G solvation = -20649.959179 eV Core-core repulsion = 17758.458539 eV Total energy + Delta-G solvation = -2891.500641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.43186 -37.10718 -35.92736 -33.73402 -32.08021 -31.09806 -29.26179 -28.20518 -26.77213 -25.42251 -23.63539 -22.74762 -22.03441 -20.92568 -20.22667 -18.86299 -16.52407 -16.40677 -15.99921 -15.37583 -15.22007 -14.83766 -14.52809 -14.01309 -13.72296 -13.57920 -13.26770 -12.89710 -12.65300 -12.45845 -12.27890 -12.09048 -11.81213 -11.69872 -11.35588 -11.17014 -11.08054 -10.92767 -10.85621 -10.70885 -10.62939 -10.31019 -10.15866 -9.68259 -9.12535 -8.96329 -8.88811 -8.60636 -8.30165 -8.08382 -5.95024 -3.96162 1.26339 1.30189 3.36257 3.40442 3.43048 3.66078 4.19373 4.35082 4.48780 4.58535 4.83017 4.90641 4.94427 5.00544 5.24520 5.31067 5.40581 5.41837 5.45704 5.50014 5.64077 5.70143 5.79434 5.81903 5.84840 5.91252 5.93879 6.07436 6.09380 6.14331 6.30519 6.36984 6.44275 6.50390 6.58697 6.60288 6.91534 6.98692 7.13265 7.20524 7.42088 7.70338 7.73290 7.89412 8.05355 8.49250 9.09972 9.66994 11.16524 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.028170 B = 0.003406 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.730549 B = 8219.073359 C = 8853.208492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.692 5.692 15 C 0.070 3.930 16 C -0.051 4.051 17 H 0.089 0.911 18 C -0.115 4.115 19 C -0.082 4.082 20 C -0.099 4.099 21 C -0.112 4.112 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.104 4.104 25 C -0.087 4.087 26 H 0.040 0.960 27 H 0.030 0.970 28 H 0.063 0.937 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.260 0.740 32 H 0.067 0.933 33 H 0.022 0.978 34 H 0.338 0.662 35 H 0.075 0.925 36 H 0.026 0.974 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 1.439 22.711 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.324 5.324 15 C -0.059 4.059 16 C -0.070 4.070 17 H 0.108 0.892 18 C -0.153 4.153 19 C -0.119 4.119 20 C -0.099 4.099 21 C -0.130 4.130 22 C -0.141 4.141 23 C -0.138 4.138 24 C -0.122 4.122 25 C -0.087 4.087 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.158 0.842 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.066 1.735 22.535 23.162 hybrid contribution -0.985 -0.366 -0.936 1.407 sum -6.050 1.369 21.599 22.472 Atomic orbital electron populations 1.21738 0.96762 1.00417 1.00159 1.21221 0.94807 1.00083 0.94185 0.91642 1.19105 0.96124 0.95350 0.90349 1.21207 1.34642 1.08270 0.91007 0.92619 1.25021 0.95347 0.95096 0.99076 1.69960 1.39037 1.21273 1.23453 0.86688 0.78853 0.80150 0.82490 1.20267 1.21387 1.20313 1.22134 1.00298 0.94431 0.89613 1.60648 1.19926 1.50420 1.01433 1.21909 1.00242 0.94768 0.89017 1.20753 0.90324 1.01216 0.94686 0.89240 1.22370 0.97713 0.98706 0.96495 1.21100 0.91310 0.99097 1.00404 1.20624 0.94211 0.97631 0.97482 1.20593 0.91612 1.00314 1.00466 1.21025 0.98961 0.97253 0.96850 1.21084 0.96075 0.98780 0.97876 1.20785 0.92080 0.99692 0.99636 1.20594 0.95394 0.96676 0.96084 0.94082 0.95115 0.91838 0.96655 0.96790 0.93062 0.91466 0.95994 0.84179 0.90668 0.95566 0.90241 0.90777 0.90907 0.90320 0.86568 0.86110 0.85864 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.78 37.16 0.33 -2.25 16 2 C -0.08 -1.77 2.55 -90.62 -0.23 -2.00 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.54 8.41 -34.44 -0.29 -14.83 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.06 1.15 5.14 -3.82 -0.02 1.14 16 14 N -0.69 -10.67 6.50 -113.78 -0.74 -11.41 16 15 C 0.07 0.91 5.06 -3.82 -0.02 0.89 16 16 C -0.05 -0.57 3.12 -90.74 -0.28 -0.85 16 17 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 18 C -0.11 -1.00 6.62 -25.18 -0.17 -1.17 16 19 C -0.08 -0.73 6.77 -26.71 -0.18 -0.91 16 20 C -0.10 -1.09 6.14 -104.21 -0.64 -1.73 16 21 C -0.11 -1.15 10.04 -39.53 -0.40 -1.54 16 22 C -0.12 -1.23 10.05 -39.62 -0.40 -1.63 16 23 C -0.12 -1.29 10.05 -39.62 -0.40 -1.68 16 24 C -0.10 -1.23 8.83 -39.53 -0.35 -1.58 16 25 C -0.09 -1.03 5.13 -104.21 -0.53 -1.57 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.50 6.68 -51.93 -0.35 0.16 16 28 H 0.06 1.31 6.95 -51.93 -0.36 0.95 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.34 5.12 4.74 -39.29 -0.19 4.93 16 35 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.62 7.88 -51.93 -0.41 0.21 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.13 1.45 7.57 -52.48 -0.40 1.05 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -30.50 348.24 -11.12 -41.62 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.55 Total: 1.80 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -3.80 Total: -27.60 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.00 Total: -37.93 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.50 -11.12 -41.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602559852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.665 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds