Wall clock time and date at job start Mon Mar 30 2020 01:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.46704 * 2 1 4 4 C 1.53001 * 109.46855 * 239.99996 * 2 1 3 5 5 C 1.50703 * 109.47012 * 65.00264 * 4 2 1 6 6 H 1.07998 * 119.99974 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00187 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99776 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46960 * 59.99855 * 9 7 5 11 11 H 1.48496 * 109.46998 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47155 * 299.99692 * 9 7 5 13 13 C 1.52995 * 109.47130 * 120.00342 * 2 1 3 14 14 N 1.46906 * 109.46978 * 294.99913 * 13 2 1 15 15 C 1.46901 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 14 13 17 17 H 1.08998 * 110.26671 * 305.69565 * 16 15 14 18 18 C 1.54350 * 110.29938 * 183.62708 * 16 15 14 19 19 C 1.54605 * 102.27119 * 267.38973 * 18 16 15 20 20 C 1.51371 * 105.18441 * 333.64596 * 19 18 16 21 21 C 1.38500 * 130.38492 * 197.20264 * 20 19 18 22 22 C 1.38109 * 120.21392 * 179.97438 * 21 20 19 23 23 C 1.38256 * 119.93226 * 0.02562 * 22 21 20 24 24 C 1.38108 * 119.93298 * 359.97438 * 23 22 21 25 25 C 1.38213 * 109.76129 * 17.20408 * 20 19 18 26 26 H 1.08994 * 109.46704 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46753 * 299.99894 * 1 2 3 28 28 H 1.08994 * 109.47203 * 59.99889 * 1 2 3 29 29 H 1.09004 * 109.46816 * 184.99631 * 4 2 1 30 30 H 1.08993 * 109.47518 * 305.00266 * 4 2 1 31 31 H 0.96999 * 120.00038 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.46859 * 175.00205 * 13 2 1 33 33 H 1.09002 * 109.47639 * 54.99873 * 13 2 1 34 34 H 1.00899 * 110.99995 * 56.04730 * 14 13 2 35 35 H 1.09002 * 109.47401 * 59.99808 * 15 14 13 36 36 H 1.09001 * 109.46874 * 299.99821 * 15 14 13 37 37 H 1.09002 * 110.82451 * 25.64507 * 18 16 15 38 38 H 1.09001 * 110.81716 * 149.19998 * 18 16 15 39 39 H 1.09001 * 110.28472 * 214.72446 * 19 18 16 40 40 H 1.08997 * 110.30473 * 92.57918 * 19 18 16 41 41 H 1.07994 * 119.89826 * 359.97438 * 21 20 19 42 42 H 1.07999 * 120.03547 * 180.02562 * 22 21 20 43 43 H 1.07995 * 120.03468 * 180.02562 * 23 22 21 44 44 H 1.08005 * 119.88864 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5182 -3.8512 9 14 1.4984 0.5629 -5.2497 10 1 2.0895 1.9237 -5.1870 11 1 1.9945 -0.1364 -6.4621 12 1 0.0184 0.6683 -5.3093 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6267 3.6671 16 6 1.7024 0.1907 4.8892 17 1 2.0444 1.2210 4.7912 18 6 2.2686 -0.4412 6.1785 19 6 1.1152 -1.3697 6.6233 20 6 -0.1392 -0.7466 6.0492 21 6 -1.4706 -0.9483 6.3732 22 6 -2.4612 -0.2563 5.7044 23 6 -2.1236 0.6405 4.7078 24 6 -0.7965 0.8429 4.3834 25 6 0.1982 0.1499 5.0529 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 3.1264 -0.7994 -1.2056 30 1 1.6054 -1.7197 -1.2952 31 1 2.9251 -1.8407 -4.7318 32 1 3.1263 -0.7995 1.2055 33 1 1.6055 -1.7199 1.2951 34 1 0.6529 0.1792 2.4753 35 1 3.2128 -0.7039 3.6400 36 1 1.6921 -1.6247 3.7299 37 1 3.1700 -1.0158 5.9649 38 1 2.4639 0.3228 6.9310 39 1 1.0563 -1.4046 7.7112 40 1 1.2589 -2.3717 6.2191 41 1 -1.7350 -1.6489 7.1513 42 1 -3.4984 -0.4155 5.9597 43 1 -2.8969 1.1828 4.1840 44 1 -0.5337 1.5439 3.6049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602559852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:26 Heat of formation + Delta-G solvation = -19.568023 kcal Electronic energy + Delta-G solvation = -20650.636267 eV Core-core repulsion = 17758.458539 eV Total energy + Delta-G solvation = -2892.177729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23456 -38.46659 -36.98998 -35.33633 -33.84018 -32.09672 -30.12027 -29.34870 -28.52881 -26.86738 -25.06240 -23.67993 -23.47360 -21.71286 -21.18689 -20.49128 -18.52699 -17.40385 -17.04849 -16.64826 -16.29523 -16.03710 -15.79737 -15.27800 -15.16774 -14.81079 -14.24189 -14.08190 -13.88204 -13.82439 -13.49333 -13.35581 -13.11905 -13.06795 -12.76546 -12.59640 -12.47822 -12.24945 -12.05501 -11.93910 -11.81498 -11.70643 -11.54143 -11.43792 -11.08703 -10.91884 -10.52950 -9.72201 -9.44575 -9.32107 -8.17199 -6.26620 0.46625 0.49550 1.40322 1.43347 1.50964 2.42354 2.85573 3.16043 3.20077 3.52161 3.67096 4.03735 4.13606 4.18186 4.21258 4.22098 4.26779 4.39124 4.44215 4.47355 4.59532 4.66800 4.74094 4.75558 4.81781 4.86213 4.95257 4.99442 5.06959 5.09284 5.19008 5.22951 5.29581 5.34143 5.36419 5.44732 5.54150 5.59954 5.64970 5.77097 5.78655 5.88363 6.07318 6.15792 6.30973 6.46282 6.88852 7.41573 8.94803 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.028170 B = 0.003406 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.730549 B = 8219.073359 C = 8853.208492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 H 0.058 0.942 4 C 0.034 3.966 5 C -0.531 4.531 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.076 3.924 14 N -0.691 5.691 15 C 0.072 3.928 16 C -0.047 4.047 17 H 0.083 0.917 18 C -0.110 4.110 19 C -0.081 4.081 20 C -0.110 4.110 21 C -0.120 4.120 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.122 4.122 25 C -0.108 4.108 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.048 0.952 29 H -0.012 1.012 30 H -0.012 1.012 31 H 0.262 0.738 32 H 0.061 0.939 33 H 0.017 0.983 34 H 0.341 0.659 35 H 0.080 0.920 36 H 0.022 0.978 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.137 0.863 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 2.070 23.972 24.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.004 4.004 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.053 4.053 14 N -0.323 5.323 15 C -0.057 4.057 16 C -0.066 4.066 17 H 0.101 0.899 18 C -0.147 4.147 19 C -0.118 4.118 20 C -0.110 4.110 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.140 4.140 25 C -0.108 4.108 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.161 0.839 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.154 0.846 42 H 0.161 0.839 43 H 0.155 0.845 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.072 2.377 23.817 24.694 hybrid contribution -0.686 -0.582 -1.278 1.563 sum -6.758 1.796 22.539 23.599 Atomic orbital electron populations 1.21636 0.95211 1.00462 1.00953 1.21022 0.96034 0.99100 0.93276 0.92320 1.18992 0.94263 0.94503 0.92627 1.21611 1.34575 1.08617 0.92052 0.92049 1.25963 0.95222 0.96098 1.02666 1.70099 1.40206 1.22990 1.24358 0.85549 0.78949 0.78772 0.78086 1.19243 1.20994 1.19167 1.21854 0.99754 0.94027 0.89705 1.60600 1.20198 1.50146 1.01385 1.21972 1.00428 0.94739 0.88603 1.20714 0.90356 1.00661 0.94861 0.89865 1.22388 0.97992 0.98986 0.95368 1.21144 0.90293 0.98884 1.01431 1.20955 0.95272 0.97479 0.97325 1.20929 0.91463 1.00554 1.00882 1.21362 1.00218 0.96596 0.96272 1.21340 0.96037 0.99187 0.98318 1.20912 0.92855 1.00170 1.00050 1.20760 0.95631 0.97503 0.96877 0.94385 0.92021 0.93269 0.99390 0.99335 0.92922 0.92052 0.96466 0.83871 0.90188 0.95949 0.89180 0.89617 0.89147 0.90177 0.84554 0.83881 0.84470 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.78 71.99 0.63 -4.16 16 2 C -0.08 -3.20 2.55 -10.79 -0.03 -3.23 16 3 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.03 1.82 4.45 29.85 0.13 1.95 16 5 C -0.53 -30.50 8.41 25.60 0.22 -30.28 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 9 Si 0.96 44.94 29.54 68.60 2.03 46.96 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.08 2.76 5.14 86.30 0.44 3.21 16 14 N -0.69 -20.89 6.50 -513.88 -3.34 -24.23 16 15 C 0.07 1.79 5.06 86.30 0.44 2.23 16 16 C -0.05 -0.99 3.12 -10.87 -0.03 -1.03 16 17 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 18 C -0.11 -1.69 6.62 31.60 0.21 -1.48 16 19 C -0.08 -1.26 6.77 30.61 0.21 -1.05 16 20 C -0.11 -2.23 6.14 -19.59 -0.12 -2.35 16 21 C -0.12 -2.22 10.04 22.30 0.22 -2.00 16 22 C -0.13 -2.29 10.05 22.24 0.22 -2.07 16 23 C -0.13 -2.63 10.05 22.24 0.22 -2.41 16 24 C -0.12 -2.79 8.83 22.30 0.20 -2.59 16 25 C -0.11 -2.43 5.13 -19.60 -0.10 -2.53 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.96 6.68 -2.39 -0.02 1.94 16 28 H 0.05 2.00 6.95 -2.39 -0.02 1.98 16 29 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.34 10.03 4.74 -89.69 -0.43 9.61 16 35 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 36 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 1.20 7.88 -2.39 -0.02 1.18 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 44 H 0.12 2.75 7.57 -2.91 -0.02 2.72 16 Total: -1.00 -65.78 348.24 2.82 -62.96 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.53 Total: 19.44 kcal Atomic # 6 Polarization: -50.80 SS G_CDS: 3.32 Total: -47.47 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -3.06 Total: -81.89 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.78 2.82 -62.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602559852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.390 kcal (2) G-P(sol) polarization free energy of solvation -65.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds