Wall clock time and date at job start Mon Mar 30 2020 01:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00290 * 2 1 4 4 C 1.53006 * 109.46818 * 66.04123 * 3 2 1 5 5 C 1.52994 * 109.46808 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47146 * 180.02562 * 5 4 3 7 7 C 1.38236 * 119.99764 * 269.72614 * 6 5 4 8 8 C 1.38233 * 120.00454 * 179.76652 * 7 6 5 9 9 C 1.38241 * 119.99529 * 0.50327 * 8 7 6 10 10 C 1.38238 * 119.99886 * 359.75194 * 9 8 7 11 11 C 1.38228 * 120.00694 * 89.99950 * 6 5 4 12 12 C 1.46898 * 111.00073 * 236.04112 * 2 1 3 13 13 C 1.52993 * 109.47522 * 287.43861 * 12 2 1 14 14 C 1.50692 * 115.55590 * 305.56029 * 13 12 2 15 15 H 1.07997 * 120.00492 * 144.40055 * 14 13 12 16 16 C 1.37886 * 119.99786 * 324.40754 * 14 13 12 17 17 N 1.31512 * 119.99640 * 346.96486 * 16 14 13 18 18 Si 1.86796 * 120.00168 * 166.96330 * 16 14 13 19 19 H 1.48494 * 109.47042 * 89.99855 * 18 16 14 20 20 H 1.48501 * 109.47093 * 210.00088 * 18 16 14 21 21 H 1.48501 * 109.46929 * 329.99940 * 18 16 14 22 22 C 1.53004 * 117.49814 * 159.88347 * 13 12 2 23 23 C 1.53005 * 117.49383 * 91.23040 * 13 12 2 24 24 H 1.09003 * 109.47068 * 64.92433 * 1 2 3 25 25 H 1.09000 * 109.47214 * 184.91833 * 1 2 3 26 26 H 1.08995 * 109.47326 * 304.92221 * 1 2 3 27 27 H 1.08993 * 109.47076 * 186.04403 * 3 2 1 28 28 H 1.09000 * 109.46961 * 306.04601 * 3 2 1 29 29 H 1.08993 * 109.47247 * 300.00476 * 4 3 2 30 30 H 1.09000 * 109.46964 * 60.00480 * 4 3 2 31 31 H 1.09003 * 109.47420 * 300.00160 * 5 4 3 32 32 H 1.08996 * 109.47348 * 59.99922 * 5 4 3 33 33 H 1.08004 * 119.99726 * 359.97438 * 7 6 5 34 34 H 1.07994 * 120.00354 * 180.23213 * 8 7 6 35 35 H 1.07996 * 120.00101 * 179.72680 * 9 8 7 36 36 H 1.08001 * 119.99936 * 179.97438 * 10 9 8 37 37 H 1.08007 * 119.99752 * 359.97438 * 11 6 5 38 38 H 1.09006 * 109.47147 * 47.44345 * 12 2 1 39 39 H 1.09001 * 109.47340 * 167.43895 * 12 2 1 40 40 H 0.96997 * 119.99905 * 185.05149 * 17 16 14 41 41 H 1.09002 * 117.49958 * 0.02562 * 22 13 12 42 42 H 1.09001 * 117.49627 * 145.02571 * 22 13 12 43 43 H 1.09006 * 117.49513 * 214.97955 * 23 13 12 44 44 H 1.08997 * 117.50125 * 359.97292 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1792 3.4859 1.3180 6 6 1.8212 4.1615 2.6167 7 6 0.6378 4.8678 2.7250 8 6 0.3070 5.4835 3.9176 9 6 1.1645 5.4016 4.9988 10 6 2.3503 4.6997 4.8889 11 6 2.6786 4.0797 3.6978 12 6 1.9954 -0.7661 -1.1375 13 6 1.7747 -2.2600 -0.8923 14 6 2.3250 -2.7941 0.4049 15 1 1.7949 -3.5695 0.9379 16 6 3.5055 -2.2928 0.9113 17 7 4.2803 -1.5455 0.1558 18 14 4.0041 -2.6751 2.6705 19 1 4.8112 -3.9212 2.6965 20 1 4.8104 -1.5516 3.2117 21 1 2.7869 -2.8562 3.5017 22 6 1.8065 -3.1878 -2.1085 23 6 0.4768 -2.8776 -1.4166 24 1 -0.3633 0.4356 -0.9308 25 1 -0.3634 -1.0239 0.0881 26 1 -0.3634 0.5883 0.8426 27 1 3.0797 1.3443 -0.1082 28 1 1.5612 1.9273 -0.8309 29 1 0.5472 2.0844 1.4265 30 1 2.0657 1.5015 2.1492 31 1 3.2635 3.4593 1.2096 32 1 1.7446 4.0416 0.4871 33 1 -0.0299 4.9358 1.8788 34 1 -0.6193 6.0321 4.0034 35 1 0.9082 5.8862 5.9293 36 1 3.0204 4.6360 5.7335 37 1 3.6050 3.5312 3.6120 38 1 1.4768 -0.4668 -2.0483 39 1 3.0621 -0.5694 -1.2456 40 1 5.1442 -1.2537 0.4863 41 1 1.9851 -2.7339 -3.0833 42 1 2.2252 -4.1846 -1.9702 43 1 0.0212 -3.6706 -0.8234 44 1 -0.2200 -2.2196 -1.9358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602763065.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:52 Heat of formation + Delta-G solvation = 34.923817 kcal Electronic energy + Delta-G solvation = -20953.258243 eV Core-core repulsion = 18063.443458 eV Total energy + Delta-G solvation = -2889.814785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20784 -39.29926 -37.16262 -34.75526 -33.99999 -31.74213 -31.08517 -28.31086 -27.49647 -26.98861 -24.16047 -23.42909 -22.89101 -21.91737 -21.46363 -20.71330 -17.97845 -17.63476 -16.72211 -16.51797 -16.27222 -15.87118 -15.75075 -15.61613 -15.05949 -14.62458 -14.29651 -14.13709 -13.94814 -13.84409 -13.34266 -13.08156 -12.88825 -12.79273 -12.64651 -12.44929 -12.36213 -12.28050 -12.15265 -11.88275 -11.80957 -11.70494 -11.39448 -11.02260 -10.94729 -10.42298 -9.84330 -9.79787 -9.55360 -8.72903 -7.90986 -5.94613 0.48107 0.52325 1.42801 1.47604 1.55730 2.52108 2.88678 3.12592 3.40181 3.79155 3.87771 3.94453 4.17018 4.19426 4.30252 4.37190 4.42179 4.48619 4.52960 4.57686 4.65336 4.69451 4.73918 4.77465 4.81109 4.87003 4.93836 4.98391 4.99312 5.15891 5.18864 5.19376 5.21772 5.32652 5.42456 5.46380 5.58493 5.60655 5.64247 5.69431 5.79021 6.07778 6.16250 6.48237 6.63851 6.73616 7.02848 7.65226 9.10626 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.018921 B = 0.004680 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.504970 B = 5981.897930 C = 6886.913275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.527 5.527 3 C 0.067 3.933 4 C -0.093 4.093 5 C -0.073 4.073 6 C -0.088 4.088 7 C -0.129 4.129 8 C -0.124 4.124 9 C -0.134 4.134 10 C -0.128 4.128 11 C -0.138 4.138 12 C 0.115 3.885 13 C 0.042 3.958 14 C -0.492 4.492 15 H 0.037 0.963 16 C 0.059 3.941 17 N -0.891 5.891 18 Si 0.933 3.067 19 H -0.283 1.283 20 H -0.285 1.285 21 H -0.279 1.279 22 C -0.209 4.209 23 C -0.195 4.195 24 H 0.017 0.983 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.029 0.971 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.116 0.884 38 H -0.007 1.007 39 H 0.085 0.915 40 H 0.256 0.744 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 14.842 4.788 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.250 5.250 3 C -0.061 4.061 4 C -0.131 4.131 5 C -0.111 4.111 6 C -0.088 4.088 7 C -0.147 4.147 8 C -0.142 4.142 9 C -0.152 4.152 10 C -0.146 4.146 11 C -0.156 4.156 12 C -0.013 4.013 13 C 0.041 3.959 14 C -0.529 4.529 15 H 0.055 0.945 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.760 3.240 19 H -0.209 1.209 20 H -0.211 1.211 21 H -0.204 1.204 22 C -0.248 4.248 23 C -0.232 4.232 24 H 0.035 0.965 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.151 0.849 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.153 0.847 37 H 0.134 0.866 38 H 0.011 0.989 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.845 14.770 5.249 16.729 hybrid contribution 0.298 -0.342 0.019 0.454 sum -5.547 14.428 5.268 16.331 Atomic orbital electron populations 1.22365 0.88281 1.01594 0.99277 1.61551 1.06858 1.12034 1.44577 1.21993 0.99258 0.88400 0.96441 1.21401 1.00745 0.94103 0.96813 1.20527 1.01343 0.94542 0.94644 1.20036 0.95285 0.97688 0.95805 1.21298 0.96378 0.98018 0.98967 1.21468 1.00327 0.99529 0.92884 1.21463 0.94399 0.99621 0.99718 1.21413 0.97901 0.97695 0.97628 1.21275 1.00119 1.00412 0.93818 1.21452 1.00292 0.92205 0.87312 1.19016 0.94135 0.90665 0.92052 1.20418 1.07220 1.19967 1.05295 0.94459 1.25159 0.96164 0.94023 0.98869 1.69905 1.09408 1.36836 1.36711 0.85976 0.77709 0.77216 0.83055 1.20910 1.21076 1.20377 1.22960 1.02062 1.01735 0.98013 1.22895 0.90926 1.04099 1.05313 0.96469 0.92440 0.91317 0.92843 0.95339 0.91616 0.93775 0.91424 0.89812 0.84899 0.83848 0.83932 0.84697 0.86577 0.98883 0.89662 0.93468 0.90802 0.91440 0.91027 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.21 9.10 127.69 1.16 2.37 16 2 N -0.53 -22.44 4.32 -922.46 -3.98 -26.43 16 3 C 0.07 2.45 4.95 86.30 0.43 2.88 16 4 C -0.09 -2.93 5.13 30.59 0.16 -2.78 16 5 C -0.07 -1.89 5.35 29.85 0.16 -1.73 16 6 C -0.09 -2.23 5.13 -19.87 -0.10 -2.33 16 7 C -0.13 -2.82 9.70 22.27 0.22 -2.61 16 8 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 9 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 10 C -0.13 -2.79 10.05 22.27 0.22 -2.57 16 11 C -0.14 -3.52 9.70 22.27 0.22 -3.30 16 12 C 0.12 5.37 4.12 86.30 0.36 5.72 16 13 C 0.04 2.08 1.58 -52.93 -0.08 1.99 16 14 C -0.49 -27.11 8.72 25.60 0.22 -26.88 16 15 H 0.04 2.11 7.85 -2.91 -0.02 2.09 16 16 C 0.06 3.22 5.14 84.66 0.44 3.66 16 17 N -0.89 -49.07 10.88 21.45 0.23 -48.83 16 18 Si 0.93 44.40 29.56 68.60 2.03 46.43 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 22 C -0.21 -9.55 9.96 30.62 0.30 -9.24 16 23 C -0.20 -8.38 8.48 30.62 0.26 -8.12 16 24 H 0.02 0.57 8.09 -2.39 -0.02 0.55 16 25 H 0.06 2.26 6.43 -2.39 -0.02 2.24 16 26 H 0.07 2.25 6.26 -2.39 -0.01 2.23 16 27 H 0.05 2.16 7.86 -2.39 -0.02 2.15 16 28 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 29 H 0.07 1.96 6.45 -2.39 -0.02 1.95 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.80 8.09 -2.39 -0.02 1.78 16 32 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 33 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 38 H -0.01 -0.30 7.95 -2.38 -0.02 -0.32 16 39 H 0.09 4.45 5.70 -2.39 -0.01 4.43 16 40 H 0.26 13.62 8.32 -92.71 -0.77 12.84 16 41 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 44 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -59.29 353.46 3.62 -55.67 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.94 Total: 20.60 kcal Atomic # 6 Polarization: -51.84 SS G_CDS: 4.40 Total: -47.44 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -3.75 Total: -75.26 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -59.29 3.62 -55.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602763065.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.595 kcal (2) G-P(sol) polarization free energy of solvation -59.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds