Wall clock time and date at job start Mon Mar 30 2020 01:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47478 * 2 1 4 4 C 1.46897 * 111.00074 * 61.80695 * 3 2 1 5 5 C 1.50700 * 109.47357 * 73.59477 * 4 3 2 6 6 H 1.07994 * 119.99663 * 5.12157 * 5 4 3 7 7 C 1.37871 * 119.99926 * 185.12473 * 5 4 3 8 8 N 1.31517 * 119.99917 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00475 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47174 * 89.99695 * 9 7 5 11 11 H 1.48497 * 109.47510 * 210.00334 * 9 7 5 12 12 H 1.48503 * 109.47004 * 330.00096 * 9 7 5 13 13 C 1.46904 * 110.99761 * 297.85387 * 3 2 1 14 14 C 1.50701 * 109.47034 * 287.25353 * 13 3 2 15 15 C 1.37971 * 119.73057 * 102.64007 * 14 13 3 16 16 C 1.38228 * 119.77306 * 179.97438 * 15 14 13 17 17 C 1.37981 * 119.77118 * 0.14762 * 16 15 14 18 18 C 1.38871 * 120.53971 * 0.02917 * 17 16 15 19 19 C 1.37707 * 119.68156 * 359.39180 * 18 17 16 20 20 C 1.50627 * 122.55510 * 181.02089 * 19 18 17 21 21 C 1.52737 * 110.57809 * 342.21050 * 20 19 18 22 22 C 1.53322 * 108.39242 * 51.19553 * 21 20 19 23 23 C 1.50633 * 117.75945 * 179.32744 * 18 17 16 24 24 H 1.08996 * 109.47582 * 179.34823 * 1 2 3 25 25 H 1.09005 * 109.47037 * 299.34306 * 1 2 3 26 26 H 1.09006 * 109.46992 * 59.33835 * 1 2 3 27 27 H 1.09004 * 109.47225 * 119.99981 * 2 1 3 28 28 H 1.08997 * 109.46881 * 239.99714 * 2 1 3 29 29 H 1.09007 * 109.47258 * 193.59815 * 4 3 2 30 30 H 1.09004 * 109.47322 * 313.59350 * 4 3 2 31 31 H 0.96999 * 120.00540 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.47194 * 47.25270 * 13 3 2 33 33 H 1.09001 * 109.47151 * 167.25047 * 13 3 2 34 34 H 1.08000 * 120.12059 * 359.96160 * 15 14 13 35 35 H 1.07995 * 120.11303 * 180.11918 * 16 15 14 36 36 H 1.08004 * 119.72974 * 180.02562 * 17 16 15 37 37 H 1.09001 * 109.25901 * 102.49306 * 20 19 18 38 38 H 1.09003 * 109.25642 * 221.92974 * 20 19 18 39 39 H 1.08996 * 109.68241 * 170.91687 * 21 20 19 40 40 H 1.09003 * 109.68436 * 291.47098 * 21 20 19 41 41 H 1.09001 * 109.68041 * 49.91030 * 22 21 20 42 42 H 1.08998 * 109.67669 * 170.45142 * 22 21 20 43 43 H 1.09005 * 109.25092 * 282.66042 * 23 18 17 44 44 H 1.08996 * 109.25065 * 42.08514 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5844 2.0973 1.2087 5 6 2.3791 1.6099 2.3927 6 1 3.1876 0.9086 2.2486 7 6 2.0738 2.0592 3.6599 8 7 2.7670 1.6334 4.6933 9 14 0.6757 3.2726 3.9092 10 1 -0.5898 2.5298 4.1370 11 1 0.9667 4.1280 5.0877 12 1 0.5386 4.1249 2.7009 13 6 1.5911 2.0949 -1.2126 14 6 2.3779 1.5902 -2.3947 15 6 1.7928 0.7084 -3.2799 16 6 2.5135 0.2454 -4.3648 17 6 3.8141 0.6659 -4.5532 18 6 4.4059 1.5507 -3.6613 19 6 3.6839 2.0211 -2.5872 20 6 4.2537 2.9991 -1.5934 21 6 5.7782 3.0279 -1.6821 22 6 6.1736 3.2354 -3.1489 23 6 5.8336 1.9563 -3.9186 24 1 -0.3634 -1.0275 -0.0117 25 1 -0.3633 0.5036 0.8959 26 1 -0.3633 0.5241 -0.8840 27 1 1.8933 -0.5138 0.8900 28 1 1.8932 -0.5139 -0.8899 29 1 1.7463 3.1673 1.0780 30 1 0.5245 1.9085 1.3799 31 1 2.5526 1.9498 5.5848 32 1 0.5287 1.9179 -1.3809 33 1 1.7662 3.1636 -1.0890 34 1 0.7754 0.3807 -3.1258 35 1 2.0604 -0.4435 -5.0622 36 1 4.3765 0.3041 -5.4014 37 1 3.8625 3.9945 -1.8038 38 1 3.9578 2.7026 -0.5871 39 1 6.1656 3.8483 -1.0780 40 1 6.1848 2.0827 -1.3225 41 1 5.6212 4.0794 -3.5621 42 1 7.2442 3.4283 -3.2167 43 1 6.4979 1.1493 -3.6090 44 1 5.9678 2.1427 -4.9840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232637370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:44 Heat of formation + Delta-G solvation = 11.775527 kcal Electronic energy + Delta-G solvation = -21726.557259 eV Core-core repulsion = 18835.738689 eV Total energy + Delta-G solvation = -2890.818570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.03493 -37.35557 -35.73926 -32.96599 -32.28131 -30.09137 -29.57668 -29.22121 -27.26576 -24.79818 -23.48688 -22.78632 -22.44389 -20.69873 -19.14056 -19.05123 -16.72096 -16.12800 -15.53379 -15.21096 -14.91693 -14.71030 -14.24080 -13.93630 -13.61166 -13.57938 -13.00431 -12.91688 -12.55255 -12.39218 -12.20704 -12.06291 -11.88322 -11.53794 -11.29027 -11.23403 -11.14158 -10.94595 -10.68538 -10.61162 -10.44778 -10.15173 -10.05739 -9.92702 -9.76860 -9.29433 -8.55498 -8.32998 -8.21909 -7.28853 -6.03507 -3.99836 1.60841 1.67034 3.27189 3.35687 3.36945 3.95206 4.42384 4.80844 4.86634 4.93764 5.09067 5.16689 5.24373 5.29087 5.33612 5.41086 5.53750 5.60915 5.69008 5.73733 5.76087 5.81617 5.89248 5.96615 6.00080 6.03723 6.08406 6.14358 6.23085 6.32236 6.40563 6.41031 6.48569 6.55061 6.67537 6.74756 6.77655 6.86236 6.96305 7.04887 7.09203 7.31000 7.64976 7.92648 8.07357 8.68838 9.08039 9.58951 11.09870 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.005689 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.230147 B = 4920.903346 C = 5825.708247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.060 3.940 3 N -0.515 5.515 4 C 0.157 3.843 5 C -0.502 4.502 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.872 3.128 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.080 3.920 14 C -0.064 4.064 15 C -0.120 4.120 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.084 4.084 19 C -0.045 4.045 20 C -0.092 4.092 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.076 4.076 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.023 0.977 30 H -0.006 1.006 31 H 0.263 0.737 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 0.730 -17.822 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.068 4.068 3 N -0.238 5.238 4 C 0.031 3.969 5 C -0.541 4.541 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.699 3.301 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.048 4.048 14 C -0.064 4.064 15 C -0.138 4.138 16 C -0.147 4.147 17 C -0.148 4.148 18 C -0.084 4.084 19 C -0.045 4.045 20 C -0.128 4.128 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.113 4.113 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.011 0.989 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.863 0.751 -17.596 17.710 hybrid contribution -1.786 0.525 0.223 1.875 sum 0.076 1.276 -17.373 17.420 Atomic orbital electron populations 1.22419 0.99687 1.01228 1.01610 1.21989 0.91715 0.91090 1.02031 1.62156 1.58939 1.01775 1.00886 1.20298 0.94370 0.93867 0.88389 1.21011 1.17009 1.27150 0.88893 0.90140 1.24885 0.96230 0.96174 0.96009 1.69892 1.40609 1.44573 0.98945 0.86921 0.83150 0.82021 0.77982 1.20430 1.21232 1.19304 1.21158 0.95669 0.98506 0.89446 1.19917 0.94267 0.96712 0.95547 1.20930 0.99753 0.98020 0.95119 1.20901 0.94807 1.00747 0.98203 1.21011 0.95418 0.98856 0.99481 1.19569 0.95826 0.97999 0.95054 1.19468 0.92992 0.97506 0.94570 1.20640 0.94724 0.96970 1.00494 1.21525 0.96098 1.02216 0.95656 1.21627 1.00562 0.97187 0.96299 1.20486 0.92954 0.97898 1.00002 0.93059 0.91824 0.93507 0.89796 0.92410 0.95888 0.98871 0.92749 0.94420 0.90664 0.86761 0.86771 0.86940 0.91632 0.87306 0.91688 0.91557 0.91918 0.91995 0.90876 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.22 9.31 37.16 0.35 -2.87 16 2 C 0.06 1.14 5.81 -3.83 -0.02 1.12 16 3 N -0.51 -10.39 3.58 -237.51 -0.85 -11.24 16 4 C 0.16 3.67 3.67 -4.98 -0.02 3.65 16 5 C -0.50 -13.94 9.11 -34.44 -0.31 -14.26 16 6 H 0.08 2.47 8.00 -52.49 -0.42 2.05 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 9 Si 0.87 21.29 27.37 -169.99 -4.65 16.64 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.29 6.69 56.52 0.38 -5.91 16 13 C 0.08 1.37 4.13 -4.97 -0.02 1.35 16 14 C -0.06 -1.01 4.76 -104.49 -0.50 -1.51 16 15 C -0.12 -1.71 8.96 -39.68 -0.36 -2.06 16 16 C -0.13 -1.66 10.05 -39.68 -0.40 -2.05 16 17 C -0.13 -1.66 9.61 -39.44 -0.38 -2.04 16 18 C -0.08 -1.17 5.73 -104.61 -0.60 -1.77 16 19 C -0.04 -0.70 5.74 -104.62 -0.60 -1.30 16 20 C -0.09 -1.42 4.60 -28.05 -0.13 -1.55 16 21 C -0.12 -1.58 5.97 -26.70 -0.16 -1.74 16 22 C -0.12 -1.34 6.00 -26.51 -0.16 -1.50 16 23 C -0.08 -0.87 5.68 -27.86 -0.16 -1.03 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.20 6.21 -51.93 -0.32 0.88 16 26 H 0.05 0.72 6.17 -51.93 -0.32 0.40 16 27 H 0.08 1.79 7.47 -51.93 -0.39 1.40 16 28 H 0.06 1.02 6.91 -51.93 -0.36 0.66 16 29 H 0.02 0.55 7.09 -51.93 -0.37 0.18 16 30 H -0.01 -0.15 4.93 -51.93 -0.26 -0.40 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.04 0.62 5.62 -51.93 -0.29 0.33 16 33 H 0.08 1.29 6.93 -51.93 -0.36 0.93 16 34 H 0.11 1.49 8.01 -52.49 -0.42 1.07 16 35 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.11 1.18 8.05 -52.48 -0.42 0.76 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.11 2.02 6.49 -51.93 -0.34 1.69 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 41 H 0.06 0.70 8.10 -51.93 -0.42 0.27 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -29.47 333.70 -10.49 -39.96 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.22 Total: 1.93 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -3.56 Total: -25.71 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.08 Total: -37.84 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.65 Total: 16.64 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.47 -10.49 -39.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232637370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.734 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds