Wall clock time and date at job start Mon Mar 30 2020 01:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47478 * 2 1 4 4 C 1.46897 * 111.00074 * 61.80695 * 3 2 1 5 5 C 1.50700 * 109.47357 * 73.59477 * 4 3 2 6 6 H 1.07994 * 119.99663 * 5.12157 * 5 4 3 7 7 C 1.37871 * 119.99926 * 185.12473 * 5 4 3 8 8 N 1.31517 * 119.99917 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00475 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47174 * 89.99695 * 9 7 5 11 11 H 1.48497 * 109.47510 * 210.00334 * 9 7 5 12 12 H 1.48503 * 109.47004 * 330.00096 * 9 7 5 13 13 C 1.46904 * 110.99761 * 297.85387 * 3 2 1 14 14 C 1.50701 * 109.47034 * 287.25353 * 13 3 2 15 15 C 1.37971 * 119.73057 * 102.64007 * 14 13 3 16 16 C 1.38228 * 119.77306 * 179.97438 * 15 14 13 17 17 C 1.37981 * 119.77118 * 0.14762 * 16 15 14 18 18 C 1.38871 * 120.53971 * 0.02917 * 17 16 15 19 19 C 1.37707 * 119.68156 * 359.39180 * 18 17 16 20 20 C 1.50627 * 122.55510 * 181.02089 * 19 18 17 21 21 C 1.52737 * 110.57809 * 342.21050 * 20 19 18 22 22 C 1.53322 * 108.39242 * 51.19553 * 21 20 19 23 23 C 1.50633 * 117.75945 * 179.32744 * 18 17 16 24 24 H 1.08996 * 109.47582 * 179.34823 * 1 2 3 25 25 H 1.09005 * 109.47037 * 299.34306 * 1 2 3 26 26 H 1.09006 * 109.46992 * 59.33835 * 1 2 3 27 27 H 1.09004 * 109.47225 * 119.99981 * 2 1 3 28 28 H 1.08997 * 109.46881 * 239.99714 * 2 1 3 29 29 H 1.09007 * 109.47258 * 193.59815 * 4 3 2 30 30 H 1.09004 * 109.47322 * 313.59350 * 4 3 2 31 31 H 0.96999 * 120.00540 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.47194 * 47.25270 * 13 3 2 33 33 H 1.09001 * 109.47151 * 167.25047 * 13 3 2 34 34 H 1.08000 * 120.12059 * 359.96160 * 15 14 13 35 35 H 1.07995 * 120.11303 * 180.11918 * 16 15 14 36 36 H 1.08004 * 119.72974 * 180.02562 * 17 16 15 37 37 H 1.09001 * 109.25901 * 102.49306 * 20 19 18 38 38 H 1.09003 * 109.25642 * 221.92974 * 20 19 18 39 39 H 1.08996 * 109.68241 * 170.91687 * 21 20 19 40 40 H 1.09003 * 109.68436 * 291.47098 * 21 20 19 41 41 H 1.09001 * 109.68041 * 49.91030 * 22 21 20 42 42 H 1.08998 * 109.67669 * 170.45142 * 22 21 20 43 43 H 1.09005 * 109.25092 * 282.66042 * 23 18 17 44 44 H 1.08996 * 109.25065 * 42.08514 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5844 2.0973 1.2087 5 6 2.3791 1.6099 2.3927 6 1 3.1876 0.9086 2.2486 7 6 2.0738 2.0592 3.6599 8 7 2.7670 1.6334 4.6933 9 14 0.6757 3.2726 3.9092 10 1 -0.5898 2.5298 4.1370 11 1 0.9667 4.1280 5.0877 12 1 0.5386 4.1249 2.7009 13 6 1.5911 2.0949 -1.2126 14 6 2.3779 1.5902 -2.3947 15 6 1.7928 0.7084 -3.2799 16 6 2.5135 0.2454 -4.3648 17 6 3.8141 0.6659 -4.5532 18 6 4.4059 1.5507 -3.6613 19 6 3.6839 2.0211 -2.5872 20 6 4.2537 2.9991 -1.5934 21 6 5.7782 3.0279 -1.6821 22 6 6.1736 3.2354 -3.1489 23 6 5.8336 1.9563 -3.9186 24 1 -0.3634 -1.0275 -0.0117 25 1 -0.3633 0.5036 0.8959 26 1 -0.3633 0.5241 -0.8840 27 1 1.8933 -0.5138 0.8900 28 1 1.8932 -0.5139 -0.8899 29 1 1.7463 3.1673 1.0780 30 1 0.5245 1.9085 1.3799 31 1 2.5526 1.9498 5.5848 32 1 0.5287 1.9179 -1.3809 33 1 1.7662 3.1636 -1.0890 34 1 0.7754 0.3807 -3.1258 35 1 2.0604 -0.4435 -5.0622 36 1 4.3765 0.3041 -5.4014 37 1 3.8625 3.9945 -1.8038 38 1 3.9578 2.7026 -0.5871 39 1 6.1656 3.8483 -1.0780 40 1 6.1848 2.0827 -1.3225 41 1 5.6212 4.0794 -3.5621 42 1 7.2442 3.4283 -3.2167 43 1 6.4979 1.1493 -3.6090 44 1 5.9678 2.1427 -4.9840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232637370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:43 Heat of formation + Delta-G solvation = -3.480902 kcal Electronic energy + Delta-G solvation = -21727.218828 eV Core-core repulsion = 18835.738689 eV Total energy + Delta-G solvation = -2891.480139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.14638 -38.84371 -36.79938 -34.79493 -33.77407 -31.39490 -30.94872 -30.47423 -28.85828 -26.21611 -24.69737 -24.40240 -23.48877 -22.09513 -20.54149 -20.16451 -18.86549 -17.32852 -16.76036 -16.60174 -16.35552 -16.01058 -15.91443 -15.21621 -14.77825 -14.63868 -14.54829 -14.38386 -14.05149 -13.69923 -13.43165 -13.29497 -13.22260 -13.03768 -12.79405 -12.56727 -12.47736 -12.33058 -12.18527 -11.96551 -11.81449 -11.68918 -11.53523 -11.46745 -11.11679 -11.04373 -10.75360 -9.42428 -9.30393 -8.86754 -8.25969 -6.27638 0.52847 0.60514 1.33076 1.35012 1.45568 2.34602 2.84275 3.07846 3.45160 3.80794 3.85335 4.05763 4.10954 4.14986 4.25523 4.30082 4.35549 4.38570 4.49378 4.56432 4.59557 4.64922 4.65104 4.74659 4.78713 4.82824 4.95086 5.03649 5.05916 5.08000 5.15954 5.20491 5.24239 5.24663 5.32898 5.41924 5.48274 5.53150 5.58793 5.69892 5.78068 5.96244 6.03395 6.26151 6.44863 6.69602 6.78843 7.35512 8.91170 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.005689 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.230147 B = 4920.903346 C = 5825.708247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.064 3.936 3 N -0.529 5.529 4 C 0.169 3.831 5 C -0.504 4.504 6 H 0.033 0.967 7 C 0.009 3.991 8 N -0.950 5.950 9 Si 0.942 3.058 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.250 1.250 13 C 0.087 3.913 14 C -0.085 4.085 15 C -0.126 4.126 16 C -0.127 4.127 17 C -0.129 4.129 18 C -0.093 4.093 19 C -0.067 4.067 20 C -0.088 4.088 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.076 4.076 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.022 0.978 30 H 0.000 1.000 31 H 0.265 0.735 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 1.127 -20.860 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.064 4.064 3 N -0.252 5.252 4 C 0.043 3.957 5 C -0.543 4.543 6 H 0.051 0.949 7 C -0.188 4.188 8 N -0.591 5.591 9 Si 0.766 3.234 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.174 1.174 13 C -0.040 4.040 14 C -0.085 4.085 15 C -0.144 4.144 16 C -0.145 4.145 17 C -0.147 4.147 18 C -0.093 4.093 19 C -0.068 4.068 20 C -0.125 4.125 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.113 4.113 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.040 0.960 30 H 0.017 0.983 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.144 0.856 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.830 1.142 -20.662 20.711 hybrid contribution -1.360 0.305 1.100 1.776 sum -0.530 1.447 -19.562 19.623 Atomic orbital electron populations 1.22313 0.97573 1.02675 1.01426 1.21895 0.93434 0.90222 1.00891 1.61999 1.59843 1.02323 1.01015 1.20011 0.93685 0.93757 0.88297 1.21200 1.16111 1.25988 0.90988 0.94900 1.25788 0.99188 0.98312 0.95522 1.70054 1.42897 1.46549 0.99606 0.85787 0.79522 0.79562 0.78523 1.19315 1.20850 1.17376 1.21104 0.96537 0.97863 0.88503 1.19877 0.94648 0.98301 0.95711 1.21114 1.00486 0.97579 0.95268 1.21265 0.94811 1.00487 0.97927 1.21395 0.95647 0.97857 0.99790 1.19901 0.96935 0.97901 0.94557 1.19584 0.93412 0.98306 0.95490 1.20513 0.96168 0.97290 0.98529 1.21516 0.94683 1.01492 0.97854 1.21593 1.01848 0.97450 0.94076 1.20556 0.91450 0.97845 1.01460 0.90927 0.93951 0.91453 0.93440 0.90964 0.96001 0.98263 0.92588 0.93223 0.91305 0.85584 0.83908 0.84078 0.91318 0.91297 0.91487 0.93103 0.91571 0.89941 0.90516 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.89 9.31 71.98 0.67 -5.22 16 2 C 0.06 2.45 5.81 86.30 0.50 2.95 16 3 N -0.53 -21.87 3.58 -905.34 -3.25 -25.12 16 4 C 0.17 8.09 3.67 85.56 0.31 8.40 16 5 C -0.50 -29.37 9.11 25.60 0.23 -29.14 16 6 H 0.03 2.17 8.00 -2.91 -0.02 2.14 16 7 C 0.01 0.51 5.47 84.65 0.46 0.97 16 8 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 9 Si 0.94 44.34 27.37 68.60 1.88 46.22 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.25 -10.95 6.69 99.48 0.67 -10.28 16 13 C 0.09 2.96 4.13 85.56 0.35 3.32 16 14 C -0.08 -2.62 4.76 -19.78 -0.09 -2.72 16 15 C -0.13 -3.30 8.96 22.20 0.20 -3.10 16 16 C -0.13 -2.84 10.05 22.21 0.22 -2.62 16 17 C -0.13 -2.87 9.61 22.36 0.21 -2.65 16 18 C -0.09 -2.38 5.73 -19.86 -0.11 -2.50 16 19 C -0.07 -2.07 5.74 -19.86 -0.11 -2.18 16 20 C -0.09 -2.80 4.60 29.74 0.14 -2.67 16 21 C -0.12 -3.20 5.97 30.61 0.18 -3.02 16 22 C -0.11 -2.31 6.00 30.74 0.18 -2.13 16 23 C -0.08 -1.54 5.68 29.86 0.17 -1.37 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.55 6.21 -2.38 -0.01 1.54 16 26 H 0.07 1.90 6.17 -2.38 -0.01 1.89 16 27 H 0.05 2.14 7.47 -2.38 -0.02 2.12 16 28 H 0.07 2.54 6.91 -2.39 -0.02 2.52 16 29 H 0.02 1.05 7.09 -2.38 -0.02 1.03 16 30 H 0.00 -0.01 4.93 -2.38 -0.01 -0.02 16 31 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.05 1.55 5.62 -2.38 -0.01 1.53 16 33 H 0.07 2.38 6.93 -2.39 -0.02 2.36 16 34 H 0.13 2.92 8.01 -2.91 -0.02 2.90 16 35 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.14 2.31 8.05 -2.91 -0.02 2.28 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.07 2.73 6.49 -2.39 -0.02 2.71 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 40 H 0.05 1.51 8.09 -2.39 -0.02 1.49 16 41 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 43 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 Total: -1.00 -66.74 333.70 3.38 -63.36 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.92 Total: 18.92 kcal Atomic # 6 Polarization: -47.19 SS G_CDS: 3.52 Total: -43.67 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.95 Total: -84.83 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -66.74 3.38 -63.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232637370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.879 kcal (2) G-P(sol) polarization free energy of solvation -66.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds