Wall clock time and date at job start Mon Mar 30 2020 01:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47044 * 2 1 4 4 C 1.36944 * 119.99615 * 272.65074 * 3 2 1 5 5 H 1.08000 * 119.99607 * 140.89220 * 4 3 2 6 6 C 1.38803 * 120.00015 * 320.88739 * 4 3 2 7 7 N 1.31620 * 120.00491 * 340.91731 * 6 4 3 8 8 Si 1.86805 * 120.00051 * 160.92019 * 6 4 3 9 9 H 1.48504 * 109.46833 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47256 * 119.99937 * 8 6 4 11 11 H 1.48493 * 109.46905 * 240.00236 * 8 6 4 12 12 C 1.46497 * 120.00241 * 92.65049 * 3 2 1 13 13 C 1.50702 * 109.47314 * 270.00115 * 12 3 2 14 14 C 1.32559 * 120.00192 * 128.85392 * 13 12 3 15 15 C 1.47809 * 119.99995 * 9.38445 * 14 13 12 16 16 C 1.39557 * 120.13894 * 40.93417 * 15 14 13 17 17 C 1.37961 * 119.85517 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.92638 * 179.97438 * 17 16 15 19 19 C 1.38365 * 120.14052 * 0.02562 * 17 16 15 20 20 C 1.50703 * 119.85536 * 179.97438 * 19 17 16 21 21 C 1.38325 * 120.28612 * 0.02562 * 19 17 16 22 22 C 1.37993 * 120.14312 * 359.68410 * 21 19 17 23 23 C 1.50698 * 120.07364 * 180.31954 * 22 21 19 24 24 H 1.09002 * 109.47434 * 300.00035 * 1 2 3 25 25 H 1.09000 * 109.47056 * 60.00246 * 1 2 3 26 26 H 1.09002 * 109.46725 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47434 * 239.99965 * 2 1 3 28 28 H 1.09000 * 109.47056 * 119.99754 * 2 1 3 29 29 H 0.96994 * 120.00707 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47294 * 150.00283 * 12 3 2 31 31 H 1.08999 * 109.46823 * 29.99951 * 12 3 2 32 32 H 1.08002 * 119.99845 * 309.13882 * 13 12 3 33 33 H 1.08002 * 120.00029 * 189.38308 * 14 13 12 34 34 H 1.07993 * 120.07404 * 0.02562 * 16 15 14 35 35 H 1.09002 * 109.47051 * 90.00133 * 18 17 16 36 36 H 1.08996 * 109.46831 * 209.99773 * 18 17 16 37 37 H 1.08997 * 109.47412 * 330.00107 * 18 17 16 38 38 H 1.09000 * 109.46546 * 89.99511 * 20 19 17 39 39 H 1.08997 * 109.46818 * 209.99771 * 20 19 17 40 40 H 1.08996 * 109.46696 * 330.00162 * 20 19 17 41 41 H 1.08001 * 119.92634 * 180.02562 * 21 19 17 42 42 H 1.09002 * 109.47035 * 270.27319 * 23 22 21 43 43 H 1.08997 * 109.47002 * 30.27525 * 23 22 21 44 44 H 1.09001 * 109.47297 * 150.27420 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1948 2.0450 -1.1848 5 1 1.9340 3.0902 -1.2621 6 6 2.7088 1.3745 -2.2860 7 7 3.3679 0.2472 -2.1216 8 14 2.4654 2.0722 -4.0017 9 1 1.6962 3.3397 -3.9160 10 1 3.7889 2.3367 -4.6210 11 1 1.7168 1.0947 -4.8319 12 6 2.3178 2.0523 1.2673 13 6 1.0823 2.7555 1.7676 14 6 0.6653 2.5591 3.0105 15 6 1.5162 1.8211 3.9676 16 6 2.8937 2.0433 3.9964 17 6 3.6825 1.3509 4.8918 18 6 5.1702 1.5892 4.9239 19 6 3.1107 0.4375 5.7596 20 6 3.9784 -0.3158 6.7347 21 6 1.7462 0.2119 5.7354 22 6 0.9453 0.9023 4.8487 23 6 -0.5420 0.6606 4.8285 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7275 -0.2212 -2.8911 30 1 3.1134 2.7812 1.1133 31 1 2.6385 1.3141 2.0024 32 1 0.5341 3.4160 1.1121 33 1 -0.2962 2.9383 3.3238 34 1 3.3412 2.7557 3.3193 35 1 5.3945 2.3919 5.6263 36 1 5.6773 0.6776 5.2399 37 1 5.5147 1.8704 3.9288 38 1 4.0530 0.2475 7.6649 39 1 3.5367 -1.2918 6.9353 40 1 4.9732 -0.4476 6.3090 41 1 1.3059 -0.5021 6.4156 42 1 -0.7698 -0.1448 4.1303 43 1 -0.8783 0.3818 5.8271 44 1 -1.0537 1.5701 4.5136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560678692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:22 Heat of formation + Delta-G solvation = 43.033013 kcal Electronic energy + Delta-G solvation = -21316.791616 eV Core-core repulsion = 18427.328472 eV Total energy + Delta-G solvation = -2889.463144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.64200 -36.39262 -34.74877 -33.30735 -31.50142 -30.87214 -29.20943 -29.01072 -26.77484 -25.54805 -24.44840 -23.32579 -21.80146 -20.30771 -20.19704 -17.97163 -16.50335 -15.97625 -15.14192 -14.83563 -14.58258 -14.43412 -14.05243 -13.74939 -13.37800 -13.01068 -12.87651 -12.74870 -12.64822 -12.56000 -12.11987 -11.95769 -11.85435 -11.69000 -11.49198 -11.27453 -11.20035 -10.84917 -10.76809 -10.66007 -10.52237 -10.16953 -10.04732 -9.91280 -9.52626 -8.92800 -8.46718 -8.26284 -7.59359 -6.50330 -5.72629 -3.36449 1.42167 1.67123 2.89838 3.36156 3.44640 3.47330 4.03555 4.51303 4.95212 4.98336 5.14962 5.17729 5.27153 5.36404 5.40233 5.56062 5.60690 5.65277 5.72352 5.74859 5.76560 5.86748 5.91624 5.97871 6.01615 6.11059 6.20547 6.38900 6.42089 6.46740 6.59838 6.63034 6.66016 6.71935 6.87487 6.88963 6.95299 7.02501 7.17442 7.30257 7.33740 7.45114 7.78680 7.87831 8.57667 9.24627 9.85751 10.45534 11.25269 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.004898 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.487198 B = 5715.460035 C = 6228.168395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 N -0.579 5.579 4 C -0.260 4.260 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.288 1.288 12 C 0.158 3.842 13 C -0.112 4.112 14 C -0.172 4.172 15 C -0.033 4.033 16 C -0.099 4.099 17 C -0.093 4.093 18 C -0.115 4.115 19 C -0.096 4.096 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.086 4.086 23 C -0.110 4.110 24 H 0.034 0.966 25 H 0.047 0.953 26 H 0.030 0.970 27 H 0.092 0.908 28 H 0.020 0.980 29 H 0.254 0.746 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.115 0.885 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.952 0.476 15.906 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 N -0.299 5.299 4 C -0.390 4.390 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.215 1.215 12 C 0.032 3.968 13 C -0.133 4.133 14 C -0.191 4.191 15 C -0.033 4.033 16 C -0.117 4.117 17 C -0.093 4.093 18 C -0.172 4.172 19 C -0.096 4.096 20 C -0.170 4.170 21 C -0.139 4.139 22 C -0.086 4.086 23 C -0.166 4.166 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.109 0.891 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.133 0.867 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.831 0.345 15.763 15.873 hybrid contribution -0.391 0.301 -1.043 1.153 sum -2.222 0.645 14.720 14.901 Atomic orbital electron populations 1.22302 1.00952 0.98409 1.00424 1.20896 0.89962 0.86501 1.01069 1.43760 1.74543 1.11223 1.00327 1.19053 1.36525 0.95431 0.87951 0.92414 1.25223 0.96577 0.97832 0.99053 1.69977 1.35671 1.18190 1.29224 0.86335 0.77542 0.78688 0.84854 1.20089 1.21616 1.21470 1.20372 0.92008 0.95177 0.89237 1.24497 1.00087 0.94436 0.94255 1.21340 0.99032 1.04449 0.94261 1.18871 0.92991 0.95999 0.95402 1.21275 0.92743 0.99868 0.97835 1.19614 0.95862 0.97405 0.96455 1.20832 0.91883 1.01839 1.02636 1.19661 0.93967 0.97986 0.97974 1.20810 0.99295 0.99181 0.97667 1.20701 0.92921 1.00567 0.99713 1.19931 0.95840 0.96672 0.96146 1.20734 0.91897 1.02382 1.01611 0.94646 0.93406 0.95083 0.89058 0.96187 0.93637 0.92851 0.92710 0.87628 0.87480 0.85647 0.91622 0.91460 0.91399 0.91684 0.92036 0.91316 0.86698 0.91282 0.92294 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 10.23 37.16 0.38 -3.08 16 2 C 0.14 3.48 6.08 -4.04 -0.02 3.46 16 3 N -0.58 -14.62 2.40 -174.61 -0.42 -15.04 16 4 C -0.26 -7.12 9.45 -15.06 -0.14 -7.26 16 5 H 0.06 1.58 7.90 -52.49 -0.41 1.16 16 6 C 0.01 0.37 5.02 -17.43 -0.09 0.28 16 7 N -0.89 -25.83 11.40 55.49 0.63 -25.20 16 8 Si 0.90 21.62 29.60 -169.99 -5.03 16.59 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 C 0.16 3.41 4.52 -5.19 -0.02 3.39 16 13 C -0.11 -2.09 9.36 -36.22 -0.34 -2.43 16 14 C -0.17 -2.84 8.84 -37.58 -0.33 -3.17 16 15 C -0.03 -0.53 5.00 -105.01 -0.53 -1.06 16 16 C -0.10 -1.60 7.08 -39.19 -0.28 -1.87 16 17 C -0.09 -1.36 5.87 -104.68 -0.61 -1.97 16 18 C -0.12 -1.38 9.60 36.01 0.35 -1.03 16 19 C -0.10 -1.30 5.89 -104.54 -0.62 -1.92 16 20 C -0.11 -1.17 9.60 36.01 0.35 -0.82 16 21 C -0.12 -1.67 9.34 -39.64 -0.37 -2.04 16 22 C -0.09 -1.28 5.91 -104.24 -0.62 -1.89 16 23 C -0.11 -1.37 9.62 36.00 0.35 -1.03 16 24 H 0.03 0.72 7.73 -51.93 -0.40 0.32 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 2.52 5.52 -51.93 -0.29 2.23 16 28 H 0.02 0.48 7.86 -51.93 -0.41 0.07 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.05 1.18 7.88 -51.93 -0.41 0.77 16 31 H 0.05 1.18 4.91 -51.93 -0.25 0.93 16 32 H 0.11 2.00 8.06 -52.49 -0.42 1.57 16 33 H 0.11 1.58 6.97 -52.49 -0.37 1.21 16 34 H 0.13 2.02 6.67 -52.49 -0.35 1.67 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.71 5.93 -51.93 -0.31 0.41 16 37 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.07 0.67 5.93 -51.93 -0.31 0.36 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 44 H 0.07 0.81 6.47 -51.93 -0.34 0.48 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -29.55 349.28 -9.30 -38.85 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.20 Total: 1.99 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -2.55 Total: -22.46 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.21 Total: -40.24 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.55 -9.30 -38.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560678692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.883 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds